| Back to Long Tests report for BioC 3.14 |
This page was generated on 2022-04-09 21:00:02 -0400 (Sat, 09 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4322 |
| riesling1 | Windows Server 2019 Standard | x64 | 4.1.2 (2021-11-01) -- "Bird Hippie" | 4108 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4135 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the biodbChebi package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 5/19 | Hostname | OS / Arch | CHECK | |||||||
| biodbChebi 1.0.1 (landing page) Pierrick Roger
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | |||||||
| riesling1 | Windows Server 2019 Standard / x64 | OK | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | ||||||||
| Package: biodbChebi |
| Version: 1.0.1 |
| Command: /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.0.1.tar.gz |
| StartedAt: 2022-04-09 08:02:21 -0400 (Sat, 09 Apr 2022) |
| EndedAt: 2022-04-09 08:06:37 -0400 (Sat, 09 Apr 2022) |
| EllapsedTime: 256.3 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: biodbChebi.Rcheck |
| Warnings: 0 |
biodbChebi.Rcheck/tests/testthat.Rout
R version 4.1.3 (2022-03-10) -- "One Push-Up"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbChebi)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbChebi")
biodb.INFO [2022-04-09 08:02:50.460][biodb::testContext]
biodb.INFO [2022-04-09 08:02:50.461][biodb::testContext] ********************************************************************************
biodb.INFO [2022-04-09 08:02:50.462][biodb::testContext] Test context - Generic long tests
biodb.INFO [2022-04-09 08:02:50.463][biodb::testContext] ********************************************************************************
biodb.INFO [2022-04-09 08:02:50.464][biodb::testContext]
biodb.INFO [2022-04-09 08:02:50.480][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.2.2.
biodb.DEBUG[2022-04-09 08:02:50.482][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.14-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2022-04-09 08:02:50.487][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-04-09 08:02:50.488][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2022-04-09 08:02:50.489][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2022-04-09 08:02:50.489][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:02:50.490][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:02:50.491][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:02:50.492][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2022-04-09 08:02:50.506][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2022-04-09 08:02:50.507][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:02:50.508][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:02:50.509][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:02:50.509][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2022-04-09 08:02:50.510][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2022-04-09 08:02:50.511][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:02:50.511][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:02:50.512][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:02:50.513][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2022-04-09 08:02:50.514][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2022-04-09 08:02:50.515][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2022-04-09 08:02:50.515][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:02:50.516][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:02:50.517][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:02:50.518][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2022-04-09 08:02:50.518][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2022-04-09 08:02:50.519][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2022-04-09 08:02:50.520][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:02:50.521][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:02:50.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:02:50.522][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2022-04-09 08:02:50.523][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2022-04-09 08:02:50.524][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:02:50.524][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:02:50.525][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:02:50.526][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2022-04-09 08:02:50.526][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2022-04-09 08:02:50.527][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2022-04-09 08:02:50.528][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:02:50.529][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:02:50.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:02:50.530][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2022-04-09 08:02:50.531][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2022-04-09 08:02:50.532][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:02:50.532][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:02:50.533][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:02:50.534][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2022-04-09 08:02:50.534][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2022-04-09 08:02:50.535][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2022-04-09 08:02:50.536][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:02:50.537][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:02:50.537][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:02:50.538][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2022-04-09 08:02:50.539][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2022-04-09 08:02:50.540][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2022-04-09 08:02:50.540][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2022-04-09 08:02:50.541][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2022-04-09 08:02:50.542][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2022-04-09 08:02:50.543][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:02:50.543][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:02:50.544][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:02:50.545][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2022-04-09 08:02:50.546][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2022-04-09 08:02:50.546][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:02:50.547][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:02:50.548][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:02:50.548][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2022-04-09 08:02:50.549][self$set] Set key entries.sep to "|".
biodb.DEBUG[2022-04-09 08:02:50.550][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:02:50.551][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:02:50.551][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:02:50.552][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2022-04-09 08:02:50.553][self$set] Set key offline to FALSE.
biodb.DEBUG[2022-04-09 08:02:50.554][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:02:50.554][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:02:50.555][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:02:50.556][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2022-04-09 08:02:50.556][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2022-04-09 08:02:50.557][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:02:50.558][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:02:50.559][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:02:50.559][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2022-04-09 08:02:50.560][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2022-04-09 08:02:50.561][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:02:50.561][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:02:50.562][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:02:50.563][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2022-04-09 08:02:50.564][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2022-04-09 08:02:50.569][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2022-04-09 08:02:50.569][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:02:50.570][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:02:50.571][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:02:50.571][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2022-04-09 08:02:50.572][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2022-04-09 08:02:50.573][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2022-04-09 08:02:50.574][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:02:50.574][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:02:50.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:02:50.579][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2022-04-09 08:02:50.608][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-04-09 08:02:50.621][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2022-04-09 08:02:50.621][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-09 08:02:50.622][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-09 08:02:50.623][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-09 08:02:50.624][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-09 08:02:50.625][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-09 08:02:50.625][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-09 08:02:50.626][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-04-09 08:02:50.627][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-09 08:02:50.628][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-04-09 08:02:50.629][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2022-04-09 08:02:50.629][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-09 08:02:50.630][self$setPropertyValue]
biodb.DEBUG[2022-04-09 08:02:50.631][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-09 08:02:50.632][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-04-09 08:02:50.632][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-04-09 08:02:50.632][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-04-09 08:02:50.632][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-04-09 08:02:50.632][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-04-09 08:02:50.632][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-09 08:02:50.633][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-09 08:02:50.634][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-09 08:02:50.635][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-09 08:02:50.635][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-09 08:02:50.636][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-09 08:02:50.637][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-09 08:02:50.638][self$setPropertyValue]
biodb.DEBUG[2022-04-09 08:02:50.638][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-09 08:02:50.639][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-09 08:02:50.640][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-09 08:02:50.641][self$setPropertyValue]
biodb.DEBUG[2022-04-09 08:02:50.642][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2022-04-09 08:02:50.643][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-04-09 08:02:50.644][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2022-04-09 08:02:50.645][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-09 08:02:50.645][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-09 08:02:50.646][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-09 08:02:50.647][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-09 08:02:50.655][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-09 08:02:50.656][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-09 08:02:50.657][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-04-09 08:02:50.658][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-09 08:02:50.658][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-04-09 08:02:50.659][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2022-04-09 08:02:50.660][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-09 08:02:50.660][self$setPropertyValue]
biodb.DEBUG[2022-04-09 08:02:50.661][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-09 08:02:50.662][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-04-09 08:02:50.662][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-04-09 08:02:50.662][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-04-09 08:02:50.662][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-04-09 08:02:50.662][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-04-09 08:02:50.663][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-09 08:02:50.663][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-09 08:02:50.664][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-09 08:02:50.665][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-09 08:02:50.665][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-09 08:02:50.666][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-09 08:02:50.667][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-09 08:02:50.667][self$setPropertyValue]
biodb.DEBUG[2022-04-09 08:02:50.668][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-09 08:02:50.669][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-09 08:02:50.669][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-09 08:02:50.670][self$setPropertyValue]
biodb.DEBUG[2022-04-09 08:02:50.671][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2022-04-09 08:02:50.672][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-04-09 08:02:50.673][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2022-04-09 08:02:50.674][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-09 08:02:50.674][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-09 08:02:50.675][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-09 08:02:50.676][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-09 08:02:50.676][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-09 08:02:50.677][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-09 08:02:50.678][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-04-09 08:02:50.679][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-09 08:02:50.679][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-04-09 08:02:50.680][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2022-04-09 08:02:50.681][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-09 08:02:50.682][self$setPropertyValue]
biodb.DEBUG[2022-04-09 08:02:50.682][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-09 08:02:50.683][self$setPropertyValue]
biodb.DEBUG[2022-04-09 08:02:50.684][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-09 08:02:50.685][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-09 08:02:50.685][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-09 08:02:50.686][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-09 08:02:50.687][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-09 08:02:50.687][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-09 08:02:50.688][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-09 08:02:50.689][self$setPropertyValue]
biodb.DEBUG[2022-04-09 08:02:50.690][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-09 08:02:50.690][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-09 08:02:50.691][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-09 08:02:50.692][self$setPropertyValue]
biodb.DEBUG[2022-04-09 08:02:50.693][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2022-04-09 08:02:50.694][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-04-09 08:02:50.695][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2022-04-09 08:02:50.695][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-09 08:02:50.696][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-09 08:02:50.697][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-09 08:02:50.698][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-09 08:02:50.698][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-09 08:02:50.699][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-09 08:02:50.700][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-04-09 08:02:50.700][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-09 08:02:50.701][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-04-09 08:02:50.702][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2022-04-09 08:02:50.703][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-09 08:02:50.703][self$setPropertyValue]
biodb.DEBUG[2022-04-09 08:02:50.704][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-09 08:02:50.705][self$setPropertyValue]
biodb.DEBUG[2022-04-09 08:02:50.706][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-09 08:02:50.707][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-09 08:02:50.708][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-09 08:02:50.709][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-09 08:02:50.709][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-09 08:02:50.710][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-09 08:02:50.711][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-09 08:02:50.712][self$setPropertyValue]
biodb.DEBUG[2022-04-09 08:02:50.713][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-09 08:02:50.713][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-09 08:02:50.714][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-09 08:02:50.715][self$setPropertyValue]
biodb.DEBUG[2022-04-09 08:02:50.718][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-04-09 08:02:50.719][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:02:50.719][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:02:50.720][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:02:50.721][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:02:50.721][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:02:50.722][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:02:50.723][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:02:50.723][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:02:50.724][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:02:50.725][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:02:50.725][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:02:50.726][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:02:50.727][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:02:50.727][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:02:50.728][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:02:50.729][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:02:50.729][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:02:50.730][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:02:50.731][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:02:50.731][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:02:50.732][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:02:50.733][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:02:50.733][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:02:50.734][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:02:50.735][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:02:50.735][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:02:50.736][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:02:50.737][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:02:50.737][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:02:50.738][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:02:50.739][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:02:50.739][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:02:50.740][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:02:50.741][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:02:50.741][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:02:50.742][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:02:50.743][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:02:50.743][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:02:50.744][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:02:50.745][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:02:50.745][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:02:50.746][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:02:50.747][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:02:50.747][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:02:50.748][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:02:50.749][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:02:50.749][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:02:50.750][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:02:50.751][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:02:50.751][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:02:50.752][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:02:50.753][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:02:50.753][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:02:50.754][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:02:50.755][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:02:50.755][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:02:50.756][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:02:50.757][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:02:50.757][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:02:50.758][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:02:50.759][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:02:50.759][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:02:50.760][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:02:50.761][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:02:50.761][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:02:50.762][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:02:50.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:02:50.763][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:02:50.764][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:02:50.765][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:02:50.765][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:02:50.766][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:02:50.767][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:02:50.767][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:02:50.768][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:02:50.769][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:02:50.769][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:02:50.770][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:02:50.771][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:02:50.771][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:02:50.772][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:02:50.773][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:02:50.773][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:02:50.774][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:02:50.775][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:02:50.775][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:02:50.776][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:02:50.777][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2022-04-09 08:02:50.780][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2022-04-09 08:02:50.782][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2022-04-09 08:02:50.783][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2022-04-09 08:02:50.784][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-04-09 08:02:50.785][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-04-09 08:02:50.786][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2022-04-09 08:02:50.787][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2022-04-09 08:02:50.788][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2022-04-09 08:02:50.789][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-04-09 08:02:50.790][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-04-09 08:02:50.791][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2022-04-09 08:02:50.792][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2022-04-09 08:02:50.793][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2022-04-09 08:02:50.794][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2022-04-09 08:02:50.795][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-04-09 08:02:50.797][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2022-04-09 08:02:50.798][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2022-04-09 08:02:50.800][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-04-09 08:02:50.801][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2022-04-09 08:02:50.803][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2022-04-09 08:02:50.804][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2022-04-09 08:02:50.805][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2022-04-09 08:02:50.807][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2022-04-09 08:02:50.808][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2022-04-09 08:02:50.809][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2022-04-09 08:02:50.810][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2022-04-09 08:02:50.811][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2022-04-09 08:02:50.813][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2022-04-09 08:02:50.814][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2022-04-09 08:02:50.815][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2022-04-09 08:02:50.816][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2022-04-09 08:02:50.817][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2022-04-09 08:02:50.818][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2022-04-09 08:02:50.819][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2022-04-09 08:02:50.820][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2022-04-09 08:02:50.821][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2022-04-09 08:02:50.822][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2022-04-09 08:02:50.824][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2022-04-09 08:02:50.825][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2022-04-09 08:02:50.826][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2022-04-09 08:02:50.827][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2022-04-09 08:02:50.828][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2022-04-09 08:02:50.829][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2022-04-09 08:02:50.830][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2022-04-09 08:02:50.831][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2022-04-09 08:02:50.833][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2022-04-09 08:02:50.834][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2022-04-09 08:02:50.835][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2022-04-09 08:02:50.836][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2022-04-09 08:02:50.837][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2022-04-09 08:02:50.838][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2022-04-09 08:02:50.839][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2022-04-09 08:02:50.840][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2022-04-09 08:02:50.841][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2022-04-09 08:02:50.842][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2022-04-09 08:02:50.843][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2022-04-09 08:02:50.845][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2022-04-09 08:02:50.846][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2022-04-09 08:02:50.847][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2022-04-09 08:02:50.848][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2022-04-09 08:02:50.854][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2022-04-09 08:02:50.855][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2022-04-09 08:02:50.856][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2022-04-09 08:02:50.857][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2022-04-09 08:02:50.858][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2022-04-09 08:02:50.859][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-04-09 08:02:50.860][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-04-09 08:02:50.861][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2022-04-09 08:02:50.862][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2022-04-09 08:02:50.863][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2022-04-09 08:02:50.864][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2022-04-09 08:02:50.865][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2022-04-09 08:02:50.866][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2022-04-09 08:02:50.867][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2022-04-09 08:02:50.868][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2022-04-09 08:02:50.869][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2022-04-09 08:02:50.870][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2022-04-09 08:02:50.871][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2022-04-09 08:02:50.872][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2022-04-09 08:02:50.873][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2022-04-09 08:02:50.874][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2022-04-09 08:02:50.875][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2022-04-09 08:02:50.880][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2022-04-09 08:02:50.881][initialize] This is biodb version 1.2.2.
biodb.DEBUG[2022-04-09 08:02:50.884][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-04-09 08:02:50.884][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:02:50.885][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:02:50.886][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:02:50.886][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:02:50.890][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:02:50.891][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:02:50.891][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:02:50.892][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:02:50.893][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:02:50.893][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:02:50.894][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:02:50.895][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:02:50.895][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:02:50.896][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:02:50.897][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:02:50.897][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:02:50.898][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:02:50.899][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:02:50.899][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:02:50.900][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:02:50.901][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:02:50.901][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:02:50.902][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:02:50.902][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:02:50.903][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:02:50.904][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:02:50.905][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:02:50.905][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:02:50.906][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:02:50.907][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:02:50.907][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:02:50.908][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:02:50.909][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:02:50.909][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:02:50.910][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:02:50.910][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:02:50.911][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:02:50.912][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:02:50.912][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:02:50.913][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:02:50.914][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:02:50.914][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:02:50.915][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:02:50.916][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:02:50.916][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:02:50.917][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:02:50.918][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:02:50.918][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:02:50.919][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:02:50.920][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:02:50.920][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:02:50.921][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:02:50.922][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:02:50.922][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:02:50.923][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:02:50.924][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:02:50.924][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:02:50.925][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:02:50.925][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:02:50.926][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:02:50.927][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:02:50.927][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:02:50.928][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:02:50.929][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:02:50.929][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:02:50.930][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:02:50.931][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:02:50.931][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:02:50.932][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:02:50.933][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:02:50.933][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:02:50.934][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:02:50.934][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:02:50.935][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:02:50.936][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:02:50.936][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:02:50.937][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:02:50.938][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:02:50.938][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:02:50.939][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:02:50.940][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:02:50.940][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:02:50.941][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:02:50.942][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:02:50.942][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:02:50.943][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:02:50.944][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:02:50.944][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:02:50.945][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:02:50.945][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:02:50.946][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:02:50.947][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:02:50.947][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:02:50.948][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:02:50.949][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:02:50.949][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:02:50.950][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:02:50.951][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:02:50.951][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:02:50.952][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:02:50.953][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:02:50.953][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:02:50.954][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:02:50.955][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:02:50.955][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:02:50.956][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:02:50.956][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:02:50.957][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:02:50.958][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:02:50.958][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:02:50.959][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:02:50.960][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:02:50.960][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:02:50.961][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:02:50.962][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:02:50.962][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:02:50.963][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:02:50.964][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:02:50.964][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:02:50.965][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:02:50.966][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:02:50.966][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:02:50.967][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:02:50.968][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.14-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/definitions.yml".
biodb.DEBUG[2022-04-09 08:02:50.975][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2022-04-09 08:02:50.976][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-04-09 08:02:50.977][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2022-04-09 08:02:50.978][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-09 08:02:50.979][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-09 08:02:50.979][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-09 08:02:50.980][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-09 08:02:50.981][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2022-04-09 08:02:50.982][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2022-04-09 08:02:50.982][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2022-04-09 08:02:50.983][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-09 08:02:50.984][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-04-09 08:02:50.984][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2022-04-09 08:02:50.985][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-09 08:02:50.986][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2022-04-09 08:02:50.986][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2022-04-09 08:02:50.986][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2022-04-09 08:02:50.986][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2022-04-09 08:02:50.986][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2022-04-09 08:02:50.986][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2022-04-09 08:02:50.986][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2022-04-09 08:02:50.986][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2022-04-09 08:02:50.986][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2022-04-09 08:02:50.986][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2022-04-09 08:02:50.986][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2022-04-09 08:02:50.987][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2022-04-09 08:02:50.987][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-04-09 08:02:50.987][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-04-09 08:02:50.987][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-04-09 08:02:50.988][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2022-04-09 08:02:50.989][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-09 08:02:50.990][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-09 08:02:50.990][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-09 08:02:50.991][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-09 08:02:50.992][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-09 08:02:50.992][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-09 08:02:50.993][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:02:50.993][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2022-04-09 08:02:50.994][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-09 08:02:50.994][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-09 08:02:50.995][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2022-04-09 08:02:50.996][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2022-04-09 08:02:50.996][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2022-04-09 08:02:51.000][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-04-09 08:02:51.001][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-04-09 08:02:51.002][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2022-04-09 08:02:51.003][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-04-09 08:02:51.004][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-04-09 08:02:51.006][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-04-09 08:02:51.031][super$initialize] Initialize connector chebi.
biodb.DEBUG[2022-04-09 08:02:51.032][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2022-04-09 08:02:51.036][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2022-04-09 08:02:51.040][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2022-04-09 08:02:51.044][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-04-09 08:02:51.044][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-04-09 08:02:51.045][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2022-04-09 08:02:51.046][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2022-04-09 08:02:51.089][biodb::testThat]
biodb.INFO [2022-04-09 08:02:51.089][biodb::testThat] Running test function test.entry.fields (" Entry fields have a correct value ").
biodb.INFO [2022-04-09 08:02:51.090][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:02:51.091][biodb::testThat]
biodb.TRACE[2022-04-09 08:02:51.094][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.14-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-15440-content.xml".
biodb.DEBUG[2022-04-09 08:02:51.102][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:02:51.105][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:02:51.112][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:02:51.113][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:02:51.113][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:02:51.115][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:02:51.115][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:02:51.116][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:02:51.117][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:02:51.124][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:51.125][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:51.126][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.127][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:51.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:51.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.147][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:02:51.148][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:02:51.149][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.150][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.170][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:02:51.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:02:51.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.180][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:02:51.181][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:02:51.181][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.182][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.183][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:02:51.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:02:51.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.193][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:02:51.194][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:02:51.194][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.195][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.196][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:02:51.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:02:51.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.206][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:02:51.206][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:02:51.207][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.208][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.209][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:02:51.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:02:51.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.218][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:02:51.219][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:02:51.220][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.221][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.222][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:02:51.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:02:51.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.231][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:02:51.232][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:02:51.233][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.233][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.234][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:02:51.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:02:51.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.244][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:02:51.244][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:02:51.252][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.253][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.253][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:02:51.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:02:51.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.262][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:02:51.263][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:02:51.263][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.264][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.265][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:02:51.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:02:51.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.274][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:02:51.274][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:02:51.275][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.276][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.277][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:02:51.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:02:51.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.286][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:02:51.287][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:02:51.287][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.288][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.289][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:02:51.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:02:51.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.298][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:02:51.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:02:51.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.301][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:02:51.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:02:51.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.304][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:51.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:51.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.307][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:02:51.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:02:51.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.309][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:51.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:51.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.312][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:51.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:51.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.315][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:51.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:51.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:51.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:51.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:51.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:51.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.353][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:51.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:51.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:02:51.356][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 15440.
biodb.TRACE[2022-04-09 08:02:51.364][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:02:51.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:02:51.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.367][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:02:51.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:02:51.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.386][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:02:51.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:02:51.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.389][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:02:51.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:02:51.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.392][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:02:51.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:02:51.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.399][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:02:51.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:02:51.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.402][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-09 08:02:51.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-09 08:02:51.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.405][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-09 08:02:51.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-09 08:02:51.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.408][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-04-09 08:02:51.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-04-09 08:02:51.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.411][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-09 08:02:51.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-09 08:02:51.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.425][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:51.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:51.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.443][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:02:51.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:02:51.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.449][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:51.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:51.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.452][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:51.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:51.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.455][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:51.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:51.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:51.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:51.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.462][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:51.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:51.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.464][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:51.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:51.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.467][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:02:51.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:02:51.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.470][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:02:51.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:02:51.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.473][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:02:51.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:02:51.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:51.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:51.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.484][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:51.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:51.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.487][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:51.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:51.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.490][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:51.491][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:51.491][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.492][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.493][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:51.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:51.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.501][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:02:51.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:02:51.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.504][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:02:51.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:02:51.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.507][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:02:51.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:02:51.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.510][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:02:51.511][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:02:51.511][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.512][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.513][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:02:51.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:02:51.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.520][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:02:51.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:02:51.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.523][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:02:51.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:02:51.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.526][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:02:51.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:02:51.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.529][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:02:51.530][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:02:51.531][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.532][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.532][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:02:51.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:02:51.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.540][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:02:51.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:02:51.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.543][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:02:51.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:02:51.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.546][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:02:51.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:02:51.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.549][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:02:51.550][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:02:51.551][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.551][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.552][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:02:51.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:02:51.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.560][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:02:51.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:02:51.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.588][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:02:51.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:02:51.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.591][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:02:51.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:02:51.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.594][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:02:51.595][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:02:51.596][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.596][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.597][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:02:51.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:02:51.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.604][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:02:51.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:02:51.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.607][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:02:51.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:02:51.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.610][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:02:51.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:02:51.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.613][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:02:51.614][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:02:51.614][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.615][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.616][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:02:51.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:02:51.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.623][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:02:51.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:02:51.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.626][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:02:51.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:02:51.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.629][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:02:51.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:02:51.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.632][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:02:51.633][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:02:51.634][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.634][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.635][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:02:51.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:02:51.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.642][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:02:51.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:02:51.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.646][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:02:51.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:02:51.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.649][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:02:51.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:02:51.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.652][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:02:51.652][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:02:51.653][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.654][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.654][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:02:51.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:02:51.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.662][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:02:51.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:02:51.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.665][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:02:51.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:02:51.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.668][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:02:51.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:02:51.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.671][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:02:51.672][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:02:51.673][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.673][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.674][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:02:51.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:02:51.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.682][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:02:51.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:02:51.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.685][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:02:51.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:02:51.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.688][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:02:51.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:02:51.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.691][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:02:51.691][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:02:51.692][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.693][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.694][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:02:51.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:02:51.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.701][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:02:51.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:02:51.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.704][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:02:51.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:02:51.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.707][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:02:51.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:02:51.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.710][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:02:51.711][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:02:51.712][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.712][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.713][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:02:51.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:02:51.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.721][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:02:51.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:02:51.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.724][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:02:51.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:02:51.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.727][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:02:51.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:02:51.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.730][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:02:51.731][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:02:51.731][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.732][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.733][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:02:51.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:02:51.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.741][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:51.741][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:51.742][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.743][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.750][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:02:51.751][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:02:51.752][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.753][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.756][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:02:51.757][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:02:51.757][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.758][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.761][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:02:51.762][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:02:51.763][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.763][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.767][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:02:51.768][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:02:51.768][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.769][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.773][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:02:51.774][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:02:51.774][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.775][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.778][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:02:51.779][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:02:51.780][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.781][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.784][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:02:51.785][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:02:51.786][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.786][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.790][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:02:51.791][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:02:51.791][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.792][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.796][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:02:51.797][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:02:51.797][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.798][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.802][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:02:51.802][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:02:51.803][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.804][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.817][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.14-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-2528-content.xml".
biodb.DEBUG[2022-04-09 08:02:51.849][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:02:51.850][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:02:51.851][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:02:51.852][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:02:51.853][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:02:51.854][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:02:51.855][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:02:51.855][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:02:51.856][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:02:51.858][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:51.859][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:51.860][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.860][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:51.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:51.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.888][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:02:51.889][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:02:51.890][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.891][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.892][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:02:51.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:02:51.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.906][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:02:51.907][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:02:51.908][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.908][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.910][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:02:51.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:02:51.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.920][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:02:51.921][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:02:51.922][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.923][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.924][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:02:51.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:02:51.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.934][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:02:51.935][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:02:51.935][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.937][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.938][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:02:51.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:02:51.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.947][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:02:51.948][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:02:51.949][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.950][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.951][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:02:51.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:02:51.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.961][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:02:51.962][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:02:51.962][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.963][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.964][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:02:51.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:02:51.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.974][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:02:51.975][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:02:51.976][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.977][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.978][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:02:51.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:02:51.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.987][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:02:51.988][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:02:51.989][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.990][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:51.991][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:02:51.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:02:51.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:51.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.001][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:02:52.002][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:02:52.002][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.003][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.004][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:02:52.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:02:52.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.014][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:02:52.015][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:02:52.016][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.016][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.017][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:02:52.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:02:52.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.027][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:02:52.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:02:52.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.035][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:02:52.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:02:52.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.041][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:52.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:52.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.045][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:02:52.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:02:52.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:52.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:52.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:52.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:52.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.054][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:52.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:52.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:52.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:52.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.067][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:52.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:52.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.070][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:52.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:52.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:02:52.072][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2528.
biodb.TRACE[2022-04-09 08:02:52.098][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:02:52.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:02:52.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.101][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:02:52.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:02:52.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.104][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:02:52.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:02:52.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.107][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:02:52.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:02:52.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.110][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:02:52.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:02:52.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.113][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:02:52.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:02:52.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.115][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-09 08:02:52.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-09 08:02:52.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.118][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-09 08:02:52.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-09 08:02:52.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.121][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-04-09 08:02:52.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-04-09 08:02:52.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.124][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-09 08:02:52.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-09 08:02:52.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.127][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:52.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:52.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.133][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:02:52.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:02:52.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:52.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:52.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.141][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:52.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:52.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.144][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:52.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:52.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.147][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:52.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:52.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.150][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:52.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:52.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:52.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:52.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.156][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:02:52.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:02:52.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.158][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:02:52.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:02:52.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.161][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:02:52.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:02:52.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.174][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:52.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:52.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:52.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:52.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.180][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:52.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:52.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.183][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:52.183][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:52.184][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.185][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:52.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:52.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.192][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:02:52.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:02:52.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.195][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:02:52.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:02:52.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.198][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:02:52.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:02:52.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.201][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:02:52.201][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:02:52.202][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.203][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.203][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:02:52.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:02:52.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.210][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:02:52.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:02:52.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.213][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:02:52.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:02:52.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.216][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:02:52.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:02:52.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.218][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:02:52.219][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:02:52.220][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.220][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.224][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:02:52.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:02:52.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.231][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:02:52.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:02:52.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.234][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:02:52.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:02:52.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.237][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:02:52.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:02:52.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.239][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:02:52.240][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:02:52.241][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.241][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.242][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:02:52.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:02:52.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.249][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:02:52.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:02:52.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.252][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:02:52.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:02:52.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.254][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:02:52.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:02:52.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.257][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:02:52.258][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:02:52.258][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.263][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.264][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:02:52.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:02:52.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.271][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:02:52.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:02:52.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.273][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:02:52.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:02:52.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.276][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:02:52.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:02:52.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.279][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:02:52.280][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:02:52.280][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.281][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.281][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:02:52.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:02:52.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.288][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:02:52.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:02:52.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.291][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:02:52.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:02:52.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.294][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:02:52.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:02:52.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.297][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:02:52.297][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:02:52.298][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.299][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.299][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:02:52.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:02:52.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.306][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:02:52.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:02:52.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.309][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:02:52.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:02:52.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.312][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:02:52.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:02:52.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.314][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:02:52.315][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:02:52.316][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.316][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.317][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:02:52.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:02:52.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.324][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:02:52.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:02:52.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.327][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:02:52.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:02:52.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.330][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:02:52.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:02:52.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.332][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:02:52.333][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:02:52.334][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.334][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.335][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:02:52.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:02:52.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.342][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:02:52.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:02:52.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.345][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:02:52.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:02:52.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.348][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:02:52.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:02:52.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.350][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:02:52.351][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:02:52.352][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.352][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.353][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:02:52.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:02:52.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.360][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:02:52.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:02:52.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.363][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:02:52.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:02:52.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.366][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:02:52.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:02:52.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.368][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:02:52.369][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:02:52.370][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.370][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.371][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:02:52.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:02:52.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.381][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:02:52.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:02:52.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.384][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:02:52.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:02:52.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.386][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:02:52.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:02:52.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.389][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:02:52.390][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:02:52.390][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.391][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.392][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:02:52.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:02:52.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.399][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:02:52.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:02:52.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.401][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:02:52.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:02:52.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.404][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:02:52.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:02:52.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.407][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:02:52.408][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:02:52.408][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.409][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.410][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:02:52.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:02:52.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.417][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:52.417][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:52.418][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.419][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.422][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:02:52.423][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:02:52.423][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.424][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.427][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:02:52.428][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:02:52.429][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.429][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.432][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:02:52.433][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:02:52.434][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.435][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.438][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:02:52.438][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:02:52.439][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.440][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.443][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:02:52.444][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:02:52.444][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.445][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.448][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:02:52.449][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:02:52.450][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.450][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.454][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:02:52.454][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:02:52.455][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.456][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.459][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:02:52.460][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:02:52.460][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.461][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.464][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:02:52.465][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:02:52.466][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.466][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.469][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:02:52.470][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:02:52.471][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.471][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.475][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.14-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-7799-content.xml".
biodb.DEBUG[2022-04-09 08:02:52.482][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:02:52.483][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:02:52.484][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:02:52.485][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:02:52.486][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:02:52.487][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:02:52.487][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:02:52.488][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:02:52.489][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:02:52.490][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:52.491][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:52.492][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.492][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.493][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:52.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:52.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.502][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:02:52.502][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:02:52.503][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.504][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.505][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:02:52.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:02:52.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.513][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:02:52.514][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:02:52.515][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.515][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.519][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:02:52.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:02:52.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.527][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:02:52.528][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:02:52.529][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.529][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.530][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:02:52.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:02:52.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.538][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:02:52.539][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:02:52.540][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.540][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.541][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:02:52.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:02:52.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.550][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:02:52.550][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:02:52.551][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.552][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.553][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:02:52.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:02:52.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.561][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:02:52.562][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:02:52.563][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.563][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.564][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:02:52.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:02:52.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.572][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:02:52.573][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:02:52.574][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.574][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.575][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:02:52.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:02:52.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.584][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:02:52.584][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:02:52.585][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.586][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.587][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:02:52.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:02:52.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.595][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:02:52.596][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:02:52.596][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.597][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.598][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:02:52.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:02:52.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.606][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:02:52.607][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:02:52.608][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.608][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.609][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:02:52.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:02:52.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.617][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:02:52.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:02:52.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.620][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:02:52.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:02:52.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:52.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:52.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.626][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:02:52.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:02:52.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.628][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:52.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:52.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.631][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:52.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:52.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.634][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:52.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:52.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:52.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:52.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.645][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:52.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:52.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.648][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:52.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:52.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:02:52.650][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 7799.
biodb.TRACE[2022-04-09 08:02:52.658][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:02:52.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:02:52.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.660][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:02:52.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:02:52.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.666][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:02:52.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:02:52.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.669][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:02:52.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:02:52.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.672][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:02:52.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:02:52.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.674][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:02:52.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:02:52.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.677][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-09 08:02:52.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-09 08:02:52.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.680][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-09 08:02:52.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-09 08:02:52.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.682][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-04-09 08:02:52.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-04-09 08:02:52.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.685][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-09 08:02:52.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-09 08:02:52.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.688][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:52.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:52.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.694][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:02:52.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:02:52.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:52.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:52.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:52.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:52.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:52.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:52.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.708][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:52.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:52.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.711][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:52.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:52.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.714][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:52.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:52.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.716][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:02:52.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:02:52.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.719][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:02:52.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:02:52.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.722][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:02:52.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:02:52.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.728][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:52.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:52.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.731][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:52.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:52.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.734][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:52.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:52.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.736][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:52.737][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:52.738][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.738][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.739][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:52.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:52.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.746][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:02:52.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:02:52.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.749][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:02:52.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:02:52.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.751][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:02:52.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:02:52.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.754][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:02:52.755][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:02:52.755][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.756][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.757][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:02:52.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:02:52.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.764][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:02:52.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:02:52.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.766][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:02:52.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:02:52.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.769][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:02:52.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:02:52.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.772][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:02:52.773][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:02:52.773][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.774][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.775][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:02:52.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:02:52.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.782][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:02:52.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:02:52.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.784][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:02:52.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:02:52.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.787][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:02:52.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:02:52.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.790][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:02:52.791][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:02:52.791][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.792][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.793][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:02:52.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:02:52.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.800][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:02:52.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:02:52.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.803][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:02:52.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:02:52.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.805][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:02:52.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:02:52.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.808][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:02:52.809][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:02:52.813][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.813][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.814][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:02:52.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:02:52.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.821][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:02:52.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:02:52.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.824][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:02:52.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:02:52.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.826][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:02:52.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:02:52.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.829][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:02:52.830][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:02:52.830][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.831][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.832][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:02:52.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:02:52.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.839][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:02:52.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:02:52.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.842][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:02:52.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:02:52.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.845][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:02:52.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:02:52.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.847][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:02:52.848][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:02:52.849][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.849][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.850][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:02:52.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:02:52.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.857][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:02:52.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:02:52.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.860][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:02:52.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:02:52.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.862][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:02:52.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:02:52.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.865][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:02:52.866][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:02:52.867][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.867][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.868][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:02:52.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:02:52.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.875][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:02:52.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:02:52.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.878][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:02:52.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:02:52.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.880][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:02:52.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:02:52.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.883][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:02:52.884][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:02:52.884][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.885][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.886][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:02:52.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:02:52.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.893][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:02:52.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:02:52.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.895][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:02:52.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:02:52.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.898][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:02:52.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:02:52.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.901][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:02:52.902][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:02:52.902][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.903][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.904][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:02:52.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:02:52.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.911][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:02:52.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:02:52.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.913][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:02:52.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:02:52.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.916][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:02:52.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:02:52.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.919][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:02:52.920][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:02:52.920][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.921][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.922][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:02:52.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:02:52.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.929][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:52.929][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:52.930][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.931][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.934][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:02:52.935][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:02:52.935][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.936][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.939][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:02:52.940][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:02:52.941][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.941][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.945][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:02:52.945][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:02:52.946][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.947][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.950][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:02:52.951][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:02:52.951][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.952][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.958][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:02:52.959][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:02:52.960][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.960][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.964][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:02:52.964][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:02:52.965][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.966][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.969][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:02:52.970][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:02:52.970][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.971][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.974][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:02:52.975][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:02:52.975][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.976][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.979][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:02:52.980][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:02:52.981][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.981][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:52.985][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:02:52.985][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:02:52.986][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:52.987][ef$get] fields variable is a list.
biodb.INFO [2022-04-09 08:02:52.991][biodb::testThat]
biodb.INFO [2022-04-09 08:02:52.992][biodb::testThat] Running test function test.rt.unit (" RT unit is defined when there is an RT value. ").
biodb.INFO [2022-04-09 08:02:52.992][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:02:52.993][biodb::testThat]
biodb.DEBUG[2022-04-09 08:02:52.994][private$loadEntries] Creating entries from ids [3]: "15440, 2528, 7799".
biodb.DEBUG[2022-04-09 08:02:53.000][conn$getEntryContent] Get ChEBI entry content(s) for 3 id(s)...
biodb.TRACE[2022-04-09 08:02:53.003][cch$loadFileContent] Trying to load 3 files from cache: [3]: "15440, 2528, 7799".
biodb.INFO [2022-04-09 08:02:53.003][self$getFolderPath] Create cache folder "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649" for "chebi-0c5076ac2a43d16dbce503a44b09f649".
biodb.TRACE[2022-04-09 08:02:53.004][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2022-04-09 08:02:53.005][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:02:53.006][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:02:53.006][conn$getEntryContent] 3 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:02:53.007][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:02:53.008][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:02:53.012][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:02:53.013][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:02:53.014][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:02:53.015][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:02:53.015][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:02:53.016][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:02:53.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:02:53.017][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
biodb.DEBUG[2022-04-09 08:02:53.029][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:02:53.030][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:02:53.031][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
biodb.TRACE[2022-04-09 08:02:55.283][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440).
biodb.DEBUG[2022-04-09 08:02:55.854][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:02:55.867][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5c6fb88c946e8568cc03c0d73dc5603e.content"
biodb.TRACE[2022-04-09 08:02:55.900][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5c6fb88c946e8568cc03c0d73dc5603e.request"
biodb.DEBUG[2022-04-09 08:02:55.906][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:02:55.907][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:02:55.908][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:02:55.909][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:02:55.910][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:02:55.910][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:02:55.911][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:02:55.924][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528".
biodb.DEBUG[2022-04-09 08:02:55.934][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:02:55.935][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:02:55.945][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528".
biodb.TRACE[2022-04-09 08:02:56.394][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528).
biodb.DEBUG[2022-04-09 08:02:57.152][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:02:57.167][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65267cab26ad2d71ed08b12751f9bef2.content"
biodb.TRACE[2022-04-09 08:02:57.190][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65267cab26ad2d71ed08b12751f9bef2.request"
biodb.DEBUG[2022-04-09 08:02:57.197][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:02:57.198][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:02:57.199][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:02:57.200][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:02:57.201][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:02:57.202][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:02:57.202][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:02:57.203][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799".
biodb.DEBUG[2022-04-09 08:02:57.206][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:02:57.206][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:02:57.207][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799".
biodb.TRACE[2022-04-09 08:02:57.651][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799).
biodb.DEBUG[2022-04-09 08:02:58.120][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:02:58.135][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/07eb1d5438367a7b1616709944d88b07.content"
biodb.TRACE[2022-04-09 08:02:58.157][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/07eb1d5438367a7b1616709944d88b07.request"
biodb.TRACE[2022-04-09 08:02:58.186][private$doSaveContentToFile] Saving to cache [3]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15440.xml, /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2528.xml, /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7799.xml"
biodb.DEBUG[2022-04-09 08:02:58.193][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:02:58.225][self$createEntryFromContent] Creating ChEBI entries from 3 content(s).
biodb.DEBUG[2022-04-09 08:02:58.226][self$createEntryFromContent] Parsing 3 ChEBI entries.
biodb.DEBUG[2022-04-09 08:02:58.227][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:02:58.228][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:02:58.229][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:02:58.230][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:02:58.231][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:02:58.231][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:02:58.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:02:58.234][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:58.234][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:58.235][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.236][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.237][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:58.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:58.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.246][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:02:58.247][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:02:58.247][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.248][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.249][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:02:58.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:02:58.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.257][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:02:58.258][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:02:58.259][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.259][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.260][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:02:58.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:02:58.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.269][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:02:58.269][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:02:58.270][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.271][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.272][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:02:58.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:02:58.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.280][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:02:58.281][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:02:58.281][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.282][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.283][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:02:58.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:02:58.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.291][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:02:58.292][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:02:58.293][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.293][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.294][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:02:58.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:02:58.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.303][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:02:58.303][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:02:58.304][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.305][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.306][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:02:58.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:02:58.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.314][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:02:58.315][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:02:58.316][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.322][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.323][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:02:58.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:02:58.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.331][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:02:58.332][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:02:58.332][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.333][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.334][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:02:58.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:02:58.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.342][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:02:58.343][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:02:58.344][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.344][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.345][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:02:58.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:02:58.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.354][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:02:58.354][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:02:58.355][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.356][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.357][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:02:58.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:02:58.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.365][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:02:58.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:02:58.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.368][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:02:58.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:02:58.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.370][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:58.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:58.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.373][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:02:58.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:02:58.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.376][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:58.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:58.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.378][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:58.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:58.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.381][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:58.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:58.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:02:58.389][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:02:58.390][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:02:58.390][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:02:58.392][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:02:58.392][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:02:58.393][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:02:58.393][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:02:58.395][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:58.396][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:58.396][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.397][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.398][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:58.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:58.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.406][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:02:58.407][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:02:58.407][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.408][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.409][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:02:58.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:02:58.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.417][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:02:58.418][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:02:58.418][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.419][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.420][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:02:58.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:02:58.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.428][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:02:58.429][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:02:58.429][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.430][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.431][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:02:58.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:02:58.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.442][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:02:58.443][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:02:58.444][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.444][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.445][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:02:58.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:02:58.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.453][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:02:58.454][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:02:58.454][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.455][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.460][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:02:58.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:02:58.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.471][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:02:58.472][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:02:58.473][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.474][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.475][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:02:58.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:02:58.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.484][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:02:58.485][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:02:58.485][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.486][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.487][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:02:58.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:02:58.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.496][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:02:58.497][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:02:58.497][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.498][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.499][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:02:58.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:02:58.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.508][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:02:58.509][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:02:58.509][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.510][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.511][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:02:58.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:02:58.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.520][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:02:58.521][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:02:58.521][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.522][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.523][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:02:58.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:02:58.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.532][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:02:58.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:02:58.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.535][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:02:58.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:02:58.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.538][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:58.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:58.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.541][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:02:58.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:02:58.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.544][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:58.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:58.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.546][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:58.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:58.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.549][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:58.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:58.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:02:58.559][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:02:58.559][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:02:58.560][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:02:58.562][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:02:58.562][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:02:58.563][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:02:58.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:02:58.566][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:58.566][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:58.567][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.568][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:58.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:58.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.586][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:02:58.587][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:02:58.587][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.588][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.589][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:02:58.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:02:58.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.598][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:02:58.598][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:02:58.599][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.600][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.601][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:02:58.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:02:58.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.609][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:02:58.610][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:02:58.610][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.611][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.612][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:02:58.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:02:58.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.620][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:02:58.621][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:02:58.621][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.622][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.623][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:02:58.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:02:58.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.631][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:02:58.632][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:02:58.632][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.633][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.634][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:02:58.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:02:58.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.642][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:02:58.643][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:02:58.643][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.644][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.645][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:02:58.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:02:58.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.653][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:02:58.654][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:02:58.655][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.655][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.656][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:02:58.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:02:58.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.664][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:02:58.665][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:02:58.666][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.666][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.667][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:02:58.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:02:58.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.676][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:02:58.676][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:02:58.677][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.678][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.678][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:02:58.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:02:58.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.687][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:02:58.687][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:02:58.688][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.689][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.690][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:02:58.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:02:58.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.698][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:02:58.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:02:58.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.704][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:02:58.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:02:58.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:58.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:58.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.709][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:02:58.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:02:58.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.712][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:58.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:58.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.715][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:58.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:58.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.717][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:58.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:58.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.725][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:58.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:58.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.728][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:58.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:58.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.731][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:58.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:58.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.734][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:58.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:58.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.736][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:58.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:58.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.739][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:58.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:58.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.742][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:58.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:58.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.744][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:58.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:58.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.747][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:02:58.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:02:58.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:02:58.750][self$createEntryFromContent] Accession numbers: 15440, 2528, 7799.
biodb.TRACE[2022-04-09 08:02:58.750][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2022-04-09 08:02:58.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2022-04-09 08:02:58.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.753][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2022-04-09 08:02:58.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2022-04-09 08:02:58.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.756][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2022-04-09 08:02:58.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2022-04-09 08:02:58.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.761][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2022-04-09 08:02:58.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2022-04-09 08:02:58.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.764][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2022-04-09 08:02:58.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2022-04-09 08:02:58.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.767][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2022-04-09 08:02:58.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2022-04-09 08:02:58.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.772][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2022-04-09 08:02:58.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2022-04-09 08:02:58.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.775][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2022-04-09 08:02:58.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2022-04-09 08:02:58.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.778][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2022-04-09 08:02:58.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2022-04-09 08:02:58.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-04-09 08:02:58.784][biodb::testThat]
biodb.INFO [2022-04-09 08:02:58.784][biodb::testThat] Running test function test.searchForEntries (" We can search for an entry by searchable field ").
biodb.INFO [2022-04-09 08:02:58.785][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:02:58.786][biodb::testThat]
biodb.TRACE[2022-04-09 08:02:58.788][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:02:58.788][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:02:58.789][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.790][ef$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:02:58.790][function(conn, opt)] Testing searchForEntries() with entry "15440" and field "name".
biodb.TRACE[2022-04-09 08:02:58.808][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:02:58.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:02:58.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.811][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:02:58.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:02:58.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:02:58.813][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:02:58.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:02:58.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:02:58.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:02:58.817][function(conn, opt)] With value "squalene".
biodb.DEBUG[2022-04-09 08:02:58.828][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2022-04-09 08:02:58.830][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:02:58.831][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:02:58.832][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.TRACE[2022-04-09 08:02:59.273][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl).
biodb.DEBUG[2022-04-09 08:03:00.201][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:03:00.219][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content"
biodb.TRACE[2022-04-09 08:03:00.239][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.request"
biodb.DEBUG[2022-04-09 08:03:00.247][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:03:00.249][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:03:00.250][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:03:00.251][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL%20NAMES&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-04-09 08:03:00.954][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL%20NAMES&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-04-09 08:03:01.563][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:03:01.575][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content"
biodb.TRACE[2022-04-09 08:03:01.594][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.request"
biodb.DEBUG[2022-04-09 08:03:01.601][function(conn, opt)] With found IDs [1]: "15440".
biodb.TRACE[2022-04-09 08:03:01.610][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:01.610][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:01.611][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:01.612][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:01.612][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:01.613][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:01.614][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:01.614][ef$get] fields variable is a list.
biodb.INFO [2022-04-09 08:03:01.616][biodb::testThat]
biodb.INFO [2022-04-09 08:03:01.617][biodb::testThat] Running test function test.searchByName (" We can search for an entry by name. ").
biodb.INFO [2022-04-09 08:03:01.617][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:03:01.618][biodb::testThat]
biodb.TRACE[2022-04-09 08:03:01.629][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:01.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:01.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:01.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:01.632][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:01.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:01.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:01.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:01.634][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:01.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:01.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:01.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:01.678][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:03:01.680][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:03:01.690][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2022-04-09 08:03:01.691][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:03:01.692][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.INFO [2022-04-09 08:03:01.702][biodb::testThat]
biodb.INFO [2022-04-09 08:03:01.702][biodb::testThat] Running test function testEntryLoading (" We can load an entry from the database. ").
biodb.INFO [2022-04-09 08:03:01.703][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:03:01.703][biodb::testThat]
biodb.TRACE[2022-04-09 08:03:01.721][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:01.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:01.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:01.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:01.724][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:01.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:01.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:01.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:01.726][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:01.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:01.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:01.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:01.729][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:01.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:01.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:01.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:01.732][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:01.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:01.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:01.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:01.734][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:01.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:01.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:01.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:01.737][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-09 08:03:01.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-09 08:03:01.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:01.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:01.740][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-09 08:03:01.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-09 08:03:01.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:01.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:01.743][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-04-09 08:03:01.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-04-09 08:03:01.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:01.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:01.745][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-09 08:03:01.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-09 08:03:01.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:01.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:01.759][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:01.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:01.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:01.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:01.762][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:01.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:01.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:01.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:01.765][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:01.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:01.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:01.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:01.767][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:01.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:01.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:01.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:01.774][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:01.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:01.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:01.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:01.776][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:01.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:01.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:01.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:01.779][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-09 08:03:01.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-09 08:03:01.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:01.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:01.781][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-09 08:03:01.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-09 08:03:01.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:01.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:01.784][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-04-09 08:03:01.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-04-09 08:03:01.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:01.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:01.787][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-09 08:03:01.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-09 08:03:01.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:01.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-04-09 08:03:01.791][biodb::testThat]
biodb.INFO [2022-04-09 08:03:01.792][biodb::testThat] Running test function test.entry.page.url (" We can get a URL pointing to the entry page. ").
biodb.INFO [2022-04-09 08:03:01.792][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:03:01.793][biodb::testThat]
biodb.INFO [2022-04-09 08:03:01.796][biodb::testThat]
biodb.INFO [2022-04-09 08:03:01.797][biodb::testThat] Running test function test.entry.image.url (" We can get a URL pointing to the entry image. ").
biodb.INFO [2022-04-09 08:03:01.798][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:03:01.798][biodb::testThat]
biodb.INFO [2022-04-09 08:03:01.802][biodb::testThat]
biodb.INFO [2022-04-09 08:03:01.802][biodb::testThat] Running test function test.entry.page.url.download (" The entry page URL can be downloaded. ").
biodb.INFO [2022-04-09 08:03:01.803][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:03:01.804][biodb::testThat]
biodb.DEBUG[2022-04-09 08:03:01.806][function(conn, opt)] Trying to download "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440".
biodb.DEBUG[2022-04-09 08:03:02.473][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440.
biodb.INFO [2022-04-09 08:03:03.771][biodb::testThat]
biodb.INFO [2022-04-09 08:03:03.772][biodb::testThat] Running test function test.entry.image.url.download (" The entry image URL can be downloaded. ").
biodb.INFO [2022-04-09 08:03:03.773][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:03:03.773][biodb::testThat]
biodb.DEBUG[2022-04-09 08:03:04.230][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/displayImage.do?defaultImage=true&imageIndex=0&chebiId=15440&dimensions=400.
biodb.INFO [2022-04-09 08:03:04.676][biodb::testThat]
biodb.INFO [2022-04-09 08:03:04.679][biodb::testThat] Running test function test.searchCompound (" We can search for a compound ").
biodb.INFO [2022-04-09 08:03:04.681][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:03:04.683][biodb::testThat]
biodb.TRACE[2022-04-09 08:03:04.692][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:04.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:04.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:04.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:04.705][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:04.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:04.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:04.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:04.708][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:04.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:04.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:04.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:04.740][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:03:04.742][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:03:04.743][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2022-04-09 08:03:04.744][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:03:04.745][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2022-04-09 08:03:04.756][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:03:04.758][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:03:04.759][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2022-04-09 08:03:04.760][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:03:04.761][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.TRACE[2022-04-09 08:03:04.771][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:03:04.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:03:04.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:04.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:04.777][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:04.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:04.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:04.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:04.780][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:04.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:04.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:04.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:04.783][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:04.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:04.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:04.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:04.786][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:04.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:04.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:04.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:04.789][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:04.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:04.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:04.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:04.817][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:03:04.819][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:03:04.819][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:03:04.820][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-04-09 08:03:05.239][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-04-09 08:03:05.672][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:03:05.679][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1e3885f0c8b7bc081513880959401862.content"
biodb.TRACE[2022-04-09 08:03:05.689][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1e3885f0c8b7bc081513880959401862.request"
biodb.DEBUG[2022-04-09 08:03:05.695][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:03:05.697][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:03:05.697][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:03:05.699][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-04-09 08:03:06.119][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-04-09 08:03:06.549][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:03:06.556][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f4b7e19492b2d1086a5dba1710a3b39b.content"
biodb.TRACE[2022-04-09 08:03:06.566][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f4b7e19492b2d1086a5dba1710a3b39b.request"
biodb.DEBUG[2022-04-09 08:03:06.581][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:06.582][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:06.582][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:06.584][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:06.585][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:06.594][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:06.595][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:06.596][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:06.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:06.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:06.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:06.599][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:06.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:06.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:06.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:06.602][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:06.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:06.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:06.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:06.605][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:03:06.607][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:03:06.608][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:03:06.609][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-04-09 08:03:07.020][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-04-09 08:03:07.452][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:03:07.459][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d57f841033be8ab371045edb0388ed60.content"
biodb.TRACE[2022-04-09 08:03:07.470][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d57f841033be8ab371045edb0388ed60.request"
biodb.DEBUG[2022-04-09 08:03:07.495][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:03:07.497][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:03:07.498][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2022-04-09 08:03:07.499][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:03:07.500][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2022-04-09 08:03:07.517][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:07.518][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:07.519][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:07.520][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:07.521][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:07.521][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:07.522][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:07.523][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:07.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:07.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:07.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:07.526][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:07.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:07.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:07.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:07.529][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:07.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:07.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:07.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:07.541][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:07.541][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:07.542][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:07.543][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:07.544][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:07.544][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:07.545][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:07.546][private$loadEntries] Creating entries from ids [1]: "26747".
biodb.DEBUG[2022-04-09 08:03:07.580][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:03:07.582][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26747".
biodb.TRACE[2022-04-09 08:03:07.583][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:03:07.584][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:03:07.584][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:03:07.585][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:03:07.586][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:03:07.587][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:03:07.597][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:07.598][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:07.599][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:07.600][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:07.601][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:07.602][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:07.602][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:07.603][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=26747".
biodb.DEBUG[2022-04-09 08:03:07.606][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:03:07.606][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:03:07.608][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=26747".
biodb.TRACE[2022-04-09 08:03:08.021][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=26747).
biodb.DEBUG[2022-04-09 08:03:08.451][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:03:08.458][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/462a35453014388bd90df1c9e4ade520.content"
biodb.TRACE[2022-04-09 08:03:08.477][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/462a35453014388bd90df1c9e4ade520.request"
biodb.TRACE[2022-04-09 08:03:08.486][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26747.xml"
biodb.DEBUG[2022-04-09 08:03:08.490][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:03:08.504][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:03:08.505][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:03:08.506][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:08.507][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:08.508][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:08.509][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:08.510][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:08.511][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:08.511][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:08.513][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:08.514][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:08.515][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:08.516][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:08.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:08.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:08.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:08.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:08.524][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:08.525][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:08.526][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:08.527][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:08.528][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:08.529][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:08.530][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:08.531][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:08.532][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:08.533][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:08.534][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:08.535][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:08.536][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:08.537][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:08.537][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:08.538][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:08.539][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:08.540][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:08.541][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:08.542][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:08.542][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:08.543][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:08.544][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:08.545][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:08.546][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:08.547][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:08.547][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:08.548][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:08.549][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:08.550][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:08.551][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:08.552][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:08.553][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:08.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:08.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:08.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:08.559][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:08.560][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:08.561][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:08.562][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:08.563][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:08.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:08.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:08.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:08.569][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:08.570][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:08.571][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:08.572][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:08.573][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:08.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:08.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:08.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:08.576][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:08.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:08.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:08.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:08.579][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:08.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:08.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:08.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:08.582][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:08.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:08.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:08.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:08.586][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:08.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:08.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:08.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:08.589][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:08.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:08.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:08.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:08.592][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:08.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:08.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:08.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:08.598][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:08.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:08.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:08.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:08.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:08.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:08.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:08.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:08.609][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:08.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:08.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:08.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:08.613][self$createEntryFromContent] Accession numbers: 26747.
biodb.TRACE[2022-04-09 08:03:08.637][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:08.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:08.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:08.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:08.641][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:08.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:08.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:08.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:08.644][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:08.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:08.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:08.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:08.647][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:08.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:08.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:08.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:08.650][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:08.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:08.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:08.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:08.654][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:08.655][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:08.655][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:08.657][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:08.658][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:08.659][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:08.659][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:08.660][private$loadEntries] Creating entries from ids [1]: "59285".
biodb.DEBUG[2022-04-09 08:03:08.661][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:03:08.663][cch$loadFileContent] Trying to load 1 files from cache: [1]: "59285".
biodb.TRACE[2022-04-09 08:03:08.664][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:03:08.665][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:03:08.666][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:03:08.667][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:03:08.668][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:03:08.668][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:03:08.671][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:08.671][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:08.672][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:08.674][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:08.674][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:08.675][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:08.676][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:08.677][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=59285".
biodb.DEBUG[2022-04-09 08:03:08.679][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:03:08.680][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:03:08.681][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=59285".
biodb.TRACE[2022-04-09 08:03:09.098][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=59285).
biodb.DEBUG[2022-04-09 08:03:09.539][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:03:09.547][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a390fa120be311b7c431851d8d66d5ac.content"
biodb.TRACE[2022-04-09 08:03:09.558][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a390fa120be311b7c431851d8d66d5ac.request"
biodb.TRACE[2022-04-09 08:03:09.569][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/59285.xml"
biodb.DEBUG[2022-04-09 08:03:09.573][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:03:09.597][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:03:09.598][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:03:09.600][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:09.601][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:09.602][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:09.604][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:09.605][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:09.605][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:09.606][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:09.608][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:09.609][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:09.610][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:09.611][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:09.612][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:09.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:09.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:09.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:09.619][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:09.620][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:09.621][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:09.621][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:09.622][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:09.623][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:09.624][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:09.625][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:09.626][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:09.627][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:09.628][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:09.628][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:09.629][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:09.630][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:09.631][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:09.632][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:09.633][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:09.634][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:09.635][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:09.636][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:09.637][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:09.638][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:09.639][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:09.640][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:09.641][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:09.642][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:09.643][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:09.644][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:09.645][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:09.646][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:09.647][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:09.647][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:09.649][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:09.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:09.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:09.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:09.656][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:09.657][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:09.658][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:09.659][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:09.660][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:09.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:09.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:09.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:09.667][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:09.668][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:09.668][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:09.669][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:09.670][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:09.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:09.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:09.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:09.674][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:09.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:09.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:09.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:09.677][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:09.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:09.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:09.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:09.680][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:09.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:09.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:09.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:09.683][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:09.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:09.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:09.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:09.687][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:09.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:09.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:09.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:09.690][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:09.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:09.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:09.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:09.697][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:09.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:09.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:09.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:09.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:09.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:09.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:09.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:09.704][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:09.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:09.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:09.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:09.708][self$createEntryFromContent] Accession numbers: 59285.
biodb.TRACE[2022-04-09 08:03:09.709][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:09.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:09.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:09.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:09.712][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:09.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:09.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:09.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:09.716][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:09.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:09.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:09.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:09.719][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:09.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:09.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:09.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:09.722][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:09.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:09.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:09.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:09.726][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:09.726][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:09.727][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:09.729][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:09.730][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:09.730][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:09.731][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:09.732][private$loadEntries] Creating entries from ids [1]: "75174".
biodb.DEBUG[2022-04-09 08:03:09.733][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:03:09.734][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75174".
biodb.TRACE[2022-04-09 08:03:09.735][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:03:09.736][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:03:09.737][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:03:09.738][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:03:09.739][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:03:09.740][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:03:09.742][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:09.743][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:09.743][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:09.745][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:09.746][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:09.746][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:09.747][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:09.748][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75174".
biodb.DEBUG[2022-04-09 08:03:09.750][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:03:09.751][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:03:09.758][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75174".
biodb.TRACE[2022-04-09 08:03:10.180][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75174).
biodb.DEBUG[2022-04-09 08:03:10.620][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:03:10.627][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/379ec57940c7734782bc4c07c7e15a9b.content"
biodb.TRACE[2022-04-09 08:03:10.637][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/379ec57940c7734782bc4c07c7e15a9b.request"
biodb.TRACE[2022-04-09 08:03:10.646][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75174.xml"
biodb.DEBUG[2022-04-09 08:03:10.649][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:03:10.663][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:03:10.664][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:03:10.665][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:10.666][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:10.667][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:10.668][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:10.669][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:10.670][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:10.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:10.672][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:10.673][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:10.674][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:10.674][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:10.675][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:10.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:10.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:10.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:10.681][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:10.682][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:10.683][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:10.683][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:10.684][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:10.685][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:10.686][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:10.686][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:10.688][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:10.688][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:10.689][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:10.690][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:10.691][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:10.691][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:10.692][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:10.693][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:10.694][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:10.695][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:10.695][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:10.696][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:10.697][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:10.698][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:10.699][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:10.699][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:10.700][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:10.701][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:10.702][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:10.702][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:10.703][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:10.704][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:10.705][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:10.706][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:10.707][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:10.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:10.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:10.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:10.720][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:10.721][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:10.722][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:10.722][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:10.723][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:10.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:10.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:10.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:10.729][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:10.729][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:10.730][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:10.731][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:10.732][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:10.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:10.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:10.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:10.735][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:10.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:10.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:10.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:10.737][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:10.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:10.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:10.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:10.740][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:10.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:10.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:10.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:10.744][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:10.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:10.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:10.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:10.747][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:10.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:10.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:10.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:10.750][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:10.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:10.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:10.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:10.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:10.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:10.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:10.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:10.758][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:10.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:10.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:10.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:10.761][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:10.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:10.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:10.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:10.764][self$createEntryFromContent] Accession numbers: 75174.
biodb.TRACE[2022-04-09 08:03:10.765][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:10.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:10.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:10.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:10.768][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:10.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:10.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:10.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:10.771][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:10.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:10.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:10.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:10.775][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:10.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:10.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:10.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:10.778][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:10.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:10.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:10.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:10.781][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:10.782][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:10.783][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:10.784][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:10.785][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:10.785][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:10.786][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:10.787][private$loadEntries] Creating entries from ids [1]: "15441".
biodb.DEBUG[2022-04-09 08:03:10.788][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:03:10.789][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15441".
biodb.TRACE[2022-04-09 08:03:10.790][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:03:10.791][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:03:10.792][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:03:10.792][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:03:10.793][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:03:10.794][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:03:10.796][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:10.797][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:10.797][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:10.799][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:10.799][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:10.800][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:10.801][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:10.802][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15441".
biodb.DEBUG[2022-04-09 08:03:10.804][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:03:10.805][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:03:10.806][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15441".
biodb.TRACE[2022-04-09 08:03:11.226][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15441).
biodb.DEBUG[2022-04-09 08:03:11.926][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:03:11.933][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6d4f93841bd82da498852b3a0a5692d.content"
biodb.TRACE[2022-04-09 08:03:11.943][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6d4f93841bd82da498852b3a0a5692d.request"
biodb.TRACE[2022-04-09 08:03:11.953][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15441.xml"
biodb.DEBUG[2022-04-09 08:03:11.957][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:03:11.971][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:03:11.973][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:03:11.974][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:11.975][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:11.975][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:11.977][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:11.978][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:11.978][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:11.979][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:11.981][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:11.982][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:11.983][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:11.983][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:11.985][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:11.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:11.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:11.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:11.990][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:11.991][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:11.992][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:11.993][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:11.994][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:11.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:11.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:11.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:12.000][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:12.001][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:12.002][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:12.002][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:12.004][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:12.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:12.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:12.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:12.010][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:12.010][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:12.011][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:12.012][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:12.013][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:12.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:12.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:12.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:12.019][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:12.020][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:12.020][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:12.021][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:12.022][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:12.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:12.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:12.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:12.028][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:12.029][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:12.030][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:12.031][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:12.032][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:12.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:12.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:12.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:12.037][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:12.038][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:12.039][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:12.040][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:12.041][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:12.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:12.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:12.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:12.046][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:12.047][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:12.048][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:12.049][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:12.050][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:12.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:12.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:12.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:12.055][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:12.056][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:12.057][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:12.058][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:12.059][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:12.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:12.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:12.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:12.070][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:12.071][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:12.072][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:12.072][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:12.073][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:12.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:12.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:12.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:12.079][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:12.079][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:12.080][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:12.081][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:12.082][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:12.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:12.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:12.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:12.087][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:12.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:12.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:12.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:12.090][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:12.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:12.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:12.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:12.093][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:12.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:12.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:12.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:12.096][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:12.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:12.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:12.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:12.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:12.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:12.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:12.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:12.103][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:12.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:12.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:12.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:12.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:12.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:12.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:12.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:12.112][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:12.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:12.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:12.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:12.115][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:12.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:12.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:12.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:12.118][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:12.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:12.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:12.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:12.121][self$createEntryFromContent] Accession numbers: 15441.
biodb.TRACE[2022-04-09 08:03:12.122][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:12.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:12.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:12.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:12.125][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:12.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:12.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:12.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:12.128][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:12.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:12.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:12.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:12.131][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:12.132][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:12.132][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:12.134][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:12.134][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:12.135][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:12.136][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:12.137][private$loadEntries] Creating entries from ids [1]: "15442".
biodb.DEBUG[2022-04-09 08:03:12.138][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:03:12.139][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15442".
biodb.TRACE[2022-04-09 08:03:12.140][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:03:12.141][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:03:12.141][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:03:12.142][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:03:12.143][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:03:12.144][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:03:12.146][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:12.147][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:12.147][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:12.149][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:12.149][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:12.150][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:12.151][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:12.152][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15442".
biodb.DEBUG[2022-04-09 08:03:12.154][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:03:12.155][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:03:12.156][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15442".
biodb.TRACE[2022-04-09 08:03:12.594][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15442).
biodb.DEBUG[2022-04-09 08:03:13.169][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:03:13.185][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4c2c678eeeeb53d29ca6f3663ebee297.content"
biodb.TRACE[2022-04-09 08:03:13.194][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4c2c678eeeeb53d29ca6f3663ebee297.request"
biodb.TRACE[2022-04-09 08:03:13.203][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15442.xml"
biodb.DEBUG[2022-04-09 08:03:13.207][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:03:13.221][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:03:13.222][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:03:13.223][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:13.224][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:13.224][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:13.226][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:13.227][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:13.227][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:13.228][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:13.230][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:13.231][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:13.231][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:13.232][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:13.233][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:13.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:13.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:13.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:13.239][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:13.240][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:13.241][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:13.242][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:13.243][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:13.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:13.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:13.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:13.248][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:13.249][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:13.250][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:13.251][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:13.252][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:13.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:13.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:13.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:13.258][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:13.258][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:13.259][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:13.260][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:13.261][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:13.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:13.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:13.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:13.266][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:13.267][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:13.268][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:13.269][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:13.270][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:13.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:13.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:13.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:13.276][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:13.276][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:13.277][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:13.278][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:13.279][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:13.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:13.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:13.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:13.285][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:13.285][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:13.286][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:13.287][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:13.288][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:13.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:13.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:13.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:13.293][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:13.294][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:13.295][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:13.295][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:13.296][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:13.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:13.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:13.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:13.302][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:13.303][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:13.303][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:13.304][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:13.305][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:13.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:13.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:13.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:13.311][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:13.311][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:13.312][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:13.313][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:13.314][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:13.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:13.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:13.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:13.324][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:13.325][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:13.326][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:13.327][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:13.327][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:13.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:13.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:13.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:13.333][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:13.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:13.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:13.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:13.336][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:13.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:13.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:13.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:13.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:13.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:13.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:13.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:13.341][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:13.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:13.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:13.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:13.345][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:13.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:13.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:13.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:13.348][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:13.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:13.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:13.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:13.351][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:13.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:13.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:13.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:13.356][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:13.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:13.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:13.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:13.359][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:13.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:13.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:13.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:13.362][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:13.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:13.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:13.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:13.366][self$createEntryFromContent] Accession numbers: 15442.
biodb.TRACE[2022-04-09 08:03:13.366][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:13.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:13.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:13.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:13.369][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:13.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:13.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:13.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:13.372][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:13.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:13.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:13.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:13.376][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:13.376][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:13.377][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:13.379][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:13.379][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:13.380][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:13.381][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:13.382][private$loadEntries] Creating entries from ids [1]: "57310".
biodb.DEBUG[2022-04-09 08:03:13.382][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:03:13.384][cch$loadFileContent] Trying to load 1 files from cache: [1]: "57310".
biodb.TRACE[2022-04-09 08:03:13.384][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:03:13.385][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:03:13.386][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:03:13.387][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:03:13.388][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:03:13.388][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:03:13.391][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:13.391][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:13.392][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:13.393][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:13.394][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:13.395][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:13.395][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:13.396][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=57310".
biodb.DEBUG[2022-04-09 08:03:13.398][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:03:13.399][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:03:13.400][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=57310".
biodb.TRACE[2022-04-09 08:03:13.857][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=57310).
biodb.DEBUG[2022-04-09 08:03:14.537][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:03:14.544][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e616043f98d9256021d0f5715e02d37b.content"
biodb.TRACE[2022-04-09 08:03:14.562][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e616043f98d9256021d0f5715e02d37b.request"
biodb.TRACE[2022-04-09 08:03:14.571][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/57310.xml"
biodb.DEBUG[2022-04-09 08:03:14.575][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:03:14.589][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:03:14.590][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:03:14.591][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:14.592][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:14.593][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:14.594][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:14.595][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:14.596][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:14.596][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:14.598][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:14.599][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:14.600][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:14.600][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:14.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:14.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:14.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:14.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:14.607][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:14.608][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:14.609][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:14.610][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:14.611][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:14.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:14.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:14.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:14.616][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:14.617][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:14.618][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:14.619][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:14.620][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:14.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:14.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:14.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:14.625][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:14.626][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:14.627][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:14.627][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:14.628][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:14.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:14.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:14.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:14.634][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:14.635][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:14.636][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:14.636][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:14.637][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:14.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:14.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:14.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:14.643][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:14.644][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:14.645][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:14.645][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:14.646][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:14.647][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:14.648][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:14.649][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:14.650][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:14.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:14.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:14.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:14.656][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:14.656][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:14.657][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:14.658][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:14.659][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:14.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:14.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:14.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:14.664][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:14.665][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:14.666][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:14.667][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:14.668][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:14.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:14.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:14.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:14.673][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:14.674][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:14.675][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:14.676][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:14.677][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:14.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:14.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:14.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:14.682][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:14.683][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:14.684][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:14.684][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:14.685][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:14.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:14.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:14.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:14.696][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:14.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:14.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:14.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:14.699][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:14.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:14.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:14.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:14.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:14.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:14.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:14.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:14.705][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:14.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:14.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:14.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:14.708][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:14.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:14.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:14.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:14.711][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:14.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:14.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:14.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:14.714][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:14.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:14.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:14.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:14.720][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:14.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:14.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:14.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:14.723][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:14.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:14.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:14.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:14.726][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:14.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:14.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:14.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:14.730][self$createEntryFromContent] Accession numbers: 57310.
biodb.TRACE[2022-04-09 08:03:14.730][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:14.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:14.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:14.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:14.733][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:14.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:14.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:14.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:14.737][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:14.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:14.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:14.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:14.740][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:14.740][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:14.741][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:14.742][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:14.743][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:14.744][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:14.745][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:14.745][private$loadEntries] Creating entries from ids [1]: "66216".
biodb.DEBUG[2022-04-09 08:03:14.746][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:03:14.747][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66216".
biodb.TRACE[2022-04-09 08:03:14.748][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:03:14.749][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:03:14.750][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:03:14.751][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:03:14.752][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:03:14.752][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:03:14.755][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:14.755][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:14.756][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:14.757][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:14.758][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:14.759][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:14.759][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:14.760][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66216".
biodb.DEBUG[2022-04-09 08:03:14.762][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:03:14.763][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:03:14.764][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66216".
biodb.TRACE[2022-04-09 08:03:15.220][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66216).
biodb.DEBUG[2022-04-09 08:03:15.660][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:03:15.667][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a59039263bdeb010b063b31b1dcdd109.content"
biodb.TRACE[2022-04-09 08:03:15.682][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a59039263bdeb010b063b31b1dcdd109.request"
biodb.TRACE[2022-04-09 08:03:15.694][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66216.xml"
biodb.DEBUG[2022-04-09 08:03:15.697][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:03:15.711][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:03:15.712][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:03:15.713][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:15.714][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:15.714][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:15.716][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:15.716][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:15.717][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:15.718][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:15.720][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:15.720][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:15.721][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:15.722][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:15.723][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:15.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:15.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:15.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:15.728][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:15.729][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:15.730][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:15.730][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:15.731][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:15.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:15.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:15.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:15.737][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:15.738][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:15.738][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:15.739][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:15.740][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:15.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:15.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:15.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:15.746][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:15.746][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:15.747][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:15.748][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:15.749][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:15.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:15.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:15.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:15.754][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:15.755][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:15.756][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:15.756][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:15.757][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:15.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:15.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:15.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:15.763][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:15.764][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:15.764][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:15.765][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:15.766][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:15.767][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:15.768][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:15.768][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:15.769][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:15.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:15.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:15.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:15.775][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:15.776][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:15.777][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:15.778][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:15.779][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:15.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:15.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:15.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:15.784][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:15.785][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:15.786][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:15.787][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:15.788][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:15.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:15.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:15.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:15.793][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:15.794][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:15.795][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:15.795][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:15.796][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:15.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:15.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:15.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:15.802][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:15.803][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:15.803][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:15.804][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:15.805][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:15.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:15.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:15.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:15.811][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:15.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:15.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:15.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:15.814][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:15.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:15.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:15.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:15.822][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:15.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:15.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:15.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:15.825][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:15.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:15.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:15.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:15.828][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:15.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:15.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:15.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:15.830][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:15.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:15.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:15.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:15.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:15.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:15.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:15.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:15.839][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:15.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:15.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:15.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:15.842][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:15.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:15.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:15.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:15.845][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:15.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:15.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:15.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:15.848][self$createEntryFromContent] Accession numbers: 66216.
biodb.TRACE[2022-04-09 08:03:15.849][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:15.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:15.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:15.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:15.852][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:15.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:15.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:15.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:15.855][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:15.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:15.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:15.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:15.858][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:15.858][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:15.859][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:15.860][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:15.861][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:15.862][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:15.862][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:15.863][private$loadEntries] Creating entries from ids [1]: "70860".
biodb.DEBUG[2022-04-09 08:03:15.864][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:03:15.865][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70860".
biodb.TRACE[2022-04-09 08:03:15.866][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:03:15.867][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:03:15.868][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:03:15.869][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:03:15.869][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:03:15.870][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:03:15.872][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:15.873][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:15.874][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:15.875][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:15.876][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:15.876][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:15.877][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:15.878][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70860".
biodb.DEBUG[2022-04-09 08:03:15.880][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:03:15.880][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:03:15.882][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70860".
biodb.TRACE[2022-04-09 08:03:16.334][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70860).
biodb.DEBUG[2022-04-09 08:03:16.930][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:03:16.937][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/02f38adb5262f39c1de7b27972a97d3a.content"
biodb.TRACE[2022-04-09 08:03:16.947][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/02f38adb5262f39c1de7b27972a97d3a.request"
biodb.TRACE[2022-04-09 08:03:16.964][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70860.xml"
biodb.DEBUG[2022-04-09 08:03:16.967][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:03:16.981][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:03:16.982][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:03:16.984][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:16.984][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:16.985][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:16.986][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:16.987][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:16.987][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:16.988][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:16.990][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:16.991][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:16.991][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:16.992][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:16.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:16.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:16.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:16.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:16.999][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:17.000][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:17.000][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:17.001][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:17.002][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:17.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:17.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:17.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:17.007][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:17.007][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:17.008][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:17.009][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:17.010][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:17.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:17.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:17.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:17.014][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:17.015][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:17.016][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:17.016][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:17.017][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:17.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:17.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:17.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:17.022][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:17.023][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:17.023][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:17.024][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:17.025][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:17.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:17.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:17.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:17.030][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:17.030][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:17.031][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:17.032][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:17.033][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:17.033][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:17.034][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:17.035][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:17.035][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:17.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:17.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:17.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:17.041][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:17.041][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:17.042][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:17.043][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:17.043][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:17.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:17.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:17.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:17.048][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:17.049][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:17.050][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:17.050][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:17.051][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:17.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:17.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:17.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:17.056][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:17.057][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:17.058][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:17.058][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:17.059][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:17.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:17.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:17.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:17.064][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:17.065][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:17.065][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:17.066][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:17.067][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:17.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:17.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:17.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:17.072][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:17.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:17.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:17.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:17.074][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:17.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:17.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:17.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:17.077][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:17.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:17.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:17.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:17.080][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:17.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:17.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:17.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:17.091][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:17.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:17.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:17.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:17.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:17.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:17.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:17.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:17.097][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:17.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:17.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:17.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:17.102][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:17.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:17.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:17.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:17.104][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:17.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:17.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:17.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:17.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:17.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:17.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:17.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:17.110][self$createEntryFromContent] Accession numbers: 70860.
biodb.TRACE[2022-04-09 08:03:17.110][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:17.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:17.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:17.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:17.113][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:17.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:17.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:17.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:17.116][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:17.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:17.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:17.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:17.118][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:17.119][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:17.120][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:17.121][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:17.121][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:17.122][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:17.122][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:17.123][private$loadEntries] Creating entries from ids [1]: "70861".
biodb.DEBUG[2022-04-09 08:03:17.124][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:03:17.125][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70861".
biodb.TRACE[2022-04-09 08:03:17.126][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:03:17.127][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:03:17.127][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:03:17.128][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:03:17.129][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:03:17.129][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:03:17.131][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:17.132][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:17.132][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:17.133][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:17.134][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:17.135][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:17.135][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:17.136][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70861".
biodb.DEBUG[2022-04-09 08:03:17.138][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:03:17.139][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:03:17.140][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70861".
biodb.TRACE[2022-04-09 08:03:17.596][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70861).
biodb.DEBUG[2022-04-09 08:03:18.429][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:03:18.436][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2469ce985de4364ded27031736786fb4.content"
biodb.TRACE[2022-04-09 08:03:18.447][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2469ce985de4364ded27031736786fb4.request"
biodb.TRACE[2022-04-09 08:03:18.457][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70861.xml"
biodb.DEBUG[2022-04-09 08:03:18.460][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:03:18.483][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:03:18.484][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:03:18.485][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:18.486][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:18.487][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:18.488][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:18.489][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:18.489][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:18.490][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:18.492][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:18.492][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:18.493][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.494][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.495][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:18.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:18.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.500][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:18.501][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:18.502][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.502][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.503][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:18.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:18.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.509][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:18.510][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:18.511][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.511][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.512][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:18.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:18.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.518][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:18.519][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:18.519][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.520][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.521][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:18.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:18.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.526][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:18.527][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:18.528][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.529][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.529][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:18.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:18.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.535][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:18.536][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:18.536][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.537][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.538][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:18.539][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:18.540][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.540][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.541][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:18.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:18.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.547][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:18.547][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:18.548][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.549][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.550][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:18.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:18.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.555][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:18.556][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:18.557][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.557][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.558][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:18.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:18.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.564][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:18.565][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:18.565][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.566][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.567][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:18.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:18.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.573][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:18.573][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:18.574][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.575][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.576][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:18.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:18.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.581][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:18.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:18.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.584][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:18.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:18.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:18.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:18.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.590][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:18.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:18.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.593][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:18.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:18.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.596][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:18.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:18.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.599][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:18.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:18.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.605][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:18.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:18.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.614][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:18.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:18.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.617][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:18.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:18.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:18.620][self$createEntryFromContent] Accession numbers: 70861.
biodb.TRACE[2022-04-09 08:03:18.620][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:18.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:18.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.623][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:18.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:18.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.626][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:18.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:18.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:18.629][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:18.630][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:18.630][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:18.632][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:18.633][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:18.633][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:18.634][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:18.635][private$loadEntries] Creating entries from ids [1]: "78662".
biodb.DEBUG[2022-04-09 08:03:18.635][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:03:18.637][cch$loadFileContent] Trying to load 1 files from cache: [1]: "78662".
biodb.TRACE[2022-04-09 08:03:18.638][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:03:18.638][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:03:18.639][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:03:18.640][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:03:18.641][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:03:18.642][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:03:18.644][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:18.644][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:18.645][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:18.646][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:18.647][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:18.648][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:18.648][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:18.649][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78662".
biodb.DEBUG[2022-04-09 08:03:18.651][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:03:18.652][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:03:18.653][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78662".
biodb.TRACE[2022-04-09 08:03:19.084][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78662).
biodb.DEBUG[2022-04-09 08:03:19.614][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:03:19.621][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2a2164b6127ca54c00efe5984f5864a.content"
biodb.TRACE[2022-04-09 08:03:19.632][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2a2164b6127ca54c00efe5984f5864a.request"
biodb.TRACE[2022-04-09 08:03:19.641][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78662.xml"
biodb.DEBUG[2022-04-09 08:03:19.645][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:03:19.659][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:03:19.660][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:03:19.661][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:19.670][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:19.671][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:19.673][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:19.673][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:19.674][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:19.675][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:19.677][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:19.678][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:19.679][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.679][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.680][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:19.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:19.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.686][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:19.687][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:19.688][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.688][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.689][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:19.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:19.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.695][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:19.696][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:19.697][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.697][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.698][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:19.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:19.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.704][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:19.705][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:19.706][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.706][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.707][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:19.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:19.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.713][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:19.714][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:19.714][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.715][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.716][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:19.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:19.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.722][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:19.723][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:19.723][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.724][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.725][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:19.726][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:19.727][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.727][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.728][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:19.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:19.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.734][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:19.735][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:19.735][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.736][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.737][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:19.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:19.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.743][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:19.743][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:19.744][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.745][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.746][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:19.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:19.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.751][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:19.752][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:19.753][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.754][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.755][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:19.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:19.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.760][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:19.761][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:19.762][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.763][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.763][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:19.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:19.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.769][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:19.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:19.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.772][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:19.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:19.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.775][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:19.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:19.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.778][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:19.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:19.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.782][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:19.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:19.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.785][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:19.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:19.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.788][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:19.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:19.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:19.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:19.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.797][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:19.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:19.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.800][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:19.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:19.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:19.803][self$createEntryFromContent] Accession numbers: 78662.
biodb.TRACE[2022-04-09 08:03:19.804][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:19.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:19.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.813][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:19.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:19.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.817][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:19.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:19.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:19.820][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:19.821][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:19.822][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:19.823][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:19.824][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:19.825][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:19.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:19.826][private$loadEntries] Creating entries from ids [1]: "85084".
biodb.DEBUG[2022-04-09 08:03:19.827][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:03:19.829][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85084".
biodb.TRACE[2022-04-09 08:03:19.830][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:03:19.830][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:03:19.831][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:03:19.832][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:03:19.833][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:03:19.834][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:03:19.836][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:19.837][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:19.837][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:19.839][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:19.839][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:19.840][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:19.841][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:19.842][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85084".
biodb.DEBUG[2022-04-09 08:03:19.844][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:03:19.845][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:03:19.846][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85084".
biodb.TRACE[2022-04-09 08:03:20.260][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85084).
biodb.DEBUG[2022-04-09 08:03:20.777][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:03:20.784][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62216dc29cd0685dbac0a61545bda088.content"
biodb.TRACE[2022-04-09 08:03:20.794][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62216dc29cd0685dbac0a61545bda088.request"
biodb.TRACE[2022-04-09 08:03:20.803][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85084.xml"
biodb.DEBUG[2022-04-09 08:03:20.807][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:03:20.820][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:03:20.821][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:03:20.823][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:20.823][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:20.824][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:20.826][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:20.826][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:20.827][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:20.828][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:20.829][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:20.830][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:20.831][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.832][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:20.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:20.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.848][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:20.849][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:20.850][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.850][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.851][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:20.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:20.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.857][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:20.858][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:20.858][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.859][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.860][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:20.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:20.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.865][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:20.866][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:20.867][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.868][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.868][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:20.869][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:20.870][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.871][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.872][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:20.872][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:20.873][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.874][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.875][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:20.876][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:20.876][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.877][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.878][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:20.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:20.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.884][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:20.884][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:20.885][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.886][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.887][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:20.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:20.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.892][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:20.893][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:20.894][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.894][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.895][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:20.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:20.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.901][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:20.901][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:20.902][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.903][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.904][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:20.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:20.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.909][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:20.910][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:20.911][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.912][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.913][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:20.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:20.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.920][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:20.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:20.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.924][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:20.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:20.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.927][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:20.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:20.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.931][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:20.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:20.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.934][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:20.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:20.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.938][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:20.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:20.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.946][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:20.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:20.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.950][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:20.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:20.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.953][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:20.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:20.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:20.957][self$createEntryFromContent] Accession numbers: 85084.
biodb.TRACE[2022-04-09 08:03:20.958][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:20.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:20.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.961][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:20.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:20.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.965][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:20.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:20.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:20.968][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:20.969][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:20.969][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:20.971][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:20.972][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:20.973][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:20.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:20.975][private$loadEntries] Creating entries from ids [1]: "85086".
biodb.DEBUG[2022-04-09 08:03:20.976][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:03:20.977][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85086".
biodb.TRACE[2022-04-09 08:03:20.978][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:03:20.979][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:03:20.980][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:03:20.981][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:03:20.982][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:03:20.983][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:03:20.986][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:20.986][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:20.987][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:20.989][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:20.989][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:20.990][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:20.991][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:20.992][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85086".
biodb.DEBUG[2022-04-09 08:03:21.007][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:03:21.009][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:03:21.011][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85086".
biodb.TRACE[2022-04-09 08:03:21.435][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85086).
biodb.DEBUG[2022-04-09 08:03:21.951][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:03:21.959][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cf3472363c4a7effe355d93315025f8b.content"
biodb.TRACE[2022-04-09 08:03:21.970][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cf3472363c4a7effe355d93315025f8b.request"
biodb.TRACE[2022-04-09 08:03:21.980][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85086.xml"
biodb.DEBUG[2022-04-09 08:03:21.984][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:03:21.998][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:03:21.999][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:03:22.001][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:22.002][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:22.002][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:22.004][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:22.005][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:22.005][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:22.006][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:22.008][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:22.009][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:22.010][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.010][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.011][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:22.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:22.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.018][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:22.018][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:22.019][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.020][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.021][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:22.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:22.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.027][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:22.028][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:22.028][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.029][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.030][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:22.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:22.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.036][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:22.037][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:22.038][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.039][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.040][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:22.040][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:22.041][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.042][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.043][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:22.044][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:22.053][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.054][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.055][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:22.056][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:22.057][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.058][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.059][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:22.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:22.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.065][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:22.065][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:22.066][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.067][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.068][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:22.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:22.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.073][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:22.074][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:22.075][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.076][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.077][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:22.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:22.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.082][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:22.083][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:22.084][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.085][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.086][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:22.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:22.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.091][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:22.092][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:22.093][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.094][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.095][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:22.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:22.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.098][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:22.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:22.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.101][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:22.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:22.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.104][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:22.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:22.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:22.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:22.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:22.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:22.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.113][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:22.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:22.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.119][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:22.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:22.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.122][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:22.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:22.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:22.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:22.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:22.129][self$createEntryFromContent] Accession numbers: 85086.
biodb.TRACE[2022-04-09 08:03:22.130][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:22.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:22.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.133][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:22.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:22.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.136][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:22.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:22.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:22.139][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:22.140][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:22.140][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:22.142][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:22.143][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:22.143][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:22.144][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:22.145][private$loadEntries] Creating entries from ids [1]: "88123".
biodb.DEBUG[2022-04-09 08:03:22.146][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:03:22.147][cch$loadFileContent] Trying to load 1 files from cache: [1]: "88123".
biodb.TRACE[2022-04-09 08:03:22.148][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:03:22.149][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:03:22.150][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:03:22.151][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:03:22.152][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:03:22.152][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:03:22.155][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:22.155][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:22.156][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:22.158][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:22.158][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:22.159][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:22.160][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:22.161][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88123".
biodb.DEBUG[2022-04-09 08:03:22.163][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:03:22.164][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:03:22.165][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88123".
biodb.TRACE[2022-04-09 08:03:22.583][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88123).
biodb.DEBUG[2022-04-09 08:03:23.040][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:03:23.047][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8e37f256f660b350650d4ca45d7cd291.content"
biodb.TRACE[2022-04-09 08:03:23.058][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8e37f256f660b350650d4ca45d7cd291.request"
biodb.TRACE[2022-04-09 08:03:23.069][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88123.xml"
biodb.DEBUG[2022-04-09 08:03:23.073][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:03:23.087][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:03:23.088][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:03:23.090][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:23.090][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:23.091][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:23.093][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:23.094][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:23.094][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:23.095][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:23.097][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:23.098][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:23.098][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:23.099][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:23.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:23.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:23.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:23.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:23.106][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:23.107][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:23.108][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:23.109][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:23.110][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:23.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:23.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:23.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:23.115][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:23.116][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:23.117][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:23.118][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:23.119][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:23.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:23.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:23.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:23.125][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:23.126][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:23.127][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:23.127][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:23.128][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:23.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:23.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:23.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:23.134][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:23.135][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:23.136][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:23.136][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:23.137][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:23.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:23.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:23.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:23.143][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:23.143][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:23.144][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:23.145][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:23.146][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:23.147][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:23.147][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:23.148][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:23.149][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:23.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:23.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:23.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:23.155][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:23.155][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:23.156][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:23.157][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:23.158][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:23.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:23.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:23.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:23.171][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:23.172][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:23.173][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:23.174][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:23.175][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:23.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:23.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:23.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:23.180][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:23.181][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:23.181][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:23.182][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:23.183][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:23.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:23.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:23.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:23.188][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:23.189][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:23.190][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:23.190][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:23.191][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:23.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:23.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:23.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:23.197][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:23.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:23.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:23.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:23.200][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:23.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:23.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:23.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:23.203][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:23.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:23.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:23.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:23.206][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:23.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:23.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:23.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:23.209][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:23.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:23.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:23.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:23.212][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:23.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:23.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:23.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:23.215][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:23.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:23.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:23.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:23.220][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:23.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:23.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:23.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:23.223][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:23.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:23.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:23.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:23.226][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:23.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:23.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:23.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:23.229][self$createEntryFromContent] Accession numbers: 88123.
biodb.TRACE[2022-04-09 08:03:23.230][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:23.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:23.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:23.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:23.233][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:23.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:23.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:23.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:23.236][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:23.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:23.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:23.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:23.239][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:23.240][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:23.240][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:23.242][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:23.243][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:23.243][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:23.244][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:23.245][private$loadEntries] Creating entries from ids [1]: "134117".
biodb.DEBUG[2022-04-09 08:03:23.246][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:03:23.247][cch$loadFileContent] Trying to load 1 files from cache: [1]: "134117".
biodb.TRACE[2022-04-09 08:03:23.248][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:03:23.249][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:03:23.249][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:03:23.250][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:03:23.251][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:03:23.252][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:03:23.254][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:23.255][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:23.255][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:23.257][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:23.257][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:23.258][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:23.259][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:23.260][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=134117".
biodb.DEBUG[2022-04-09 08:03:23.262][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:03:23.263][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:03:23.264][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=134117".
biodb.TRACE[2022-04-09 08:03:23.675][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=134117).
biodb.DEBUG[2022-04-09 08:03:24.116][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:03:24.123][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8f998f0023bf19b8745b926f0b2992d7.content"
biodb.TRACE[2022-04-09 08:03:24.133][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8f998f0023bf19b8745b926f0b2992d7.request"
biodb.TRACE[2022-04-09 08:03:24.144][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/134117.xml"
biodb.DEBUG[2022-04-09 08:03:24.148][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:03:24.162][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:03:24.164][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:03:24.165][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:24.166][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:24.167][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:24.168][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:24.169][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:24.170][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:24.170][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:24.172][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:24.173][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:24.174][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:24.175][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:24.176][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:24.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:24.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:24.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:24.182][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:24.183][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:24.184][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:24.185][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:24.186][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:24.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:24.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:24.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:24.192][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:24.193][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:24.194][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:24.194][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:24.195][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:24.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:24.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:24.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:24.202][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:24.202][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:24.203][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:24.204][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:24.205][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:24.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:24.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:24.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:24.211][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:24.212][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:24.213][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:24.214][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:24.215][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:24.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:24.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:24.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:24.220][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:24.221][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:24.222][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:24.223][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:24.224][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:24.225][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:24.225][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:24.226][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:24.227][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:24.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:24.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:24.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:24.233][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:24.234][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:24.235][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:24.235][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:24.236][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:24.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:24.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:24.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:24.242][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:24.243][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:24.244][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:24.245][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:24.246][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:24.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:24.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:24.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:24.258][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:24.259][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:24.260][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:24.260][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:24.261][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:24.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:24.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:24.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:24.267][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:24.268][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:24.268][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:24.269][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:24.270][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:24.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:24.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:24.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:24.276][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:24.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:24.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:24.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:24.279][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:24.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:24.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:24.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:24.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:24.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:24.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:24.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:24.285][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:24.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:24.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:24.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:24.288][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:24.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:24.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:24.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:24.291][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:24.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:24.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:24.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:24.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:24.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:24.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:24.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:24.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:24.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:24.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:24.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:24.304][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:24.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:24.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:24.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:24.307][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:24.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:24.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:24.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:24.310][self$createEntryFromContent] Accession numbers: 134117.
biodb.TRACE[2022-04-09 08:03:24.311][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:24.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:24.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:24.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:24.314][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:24.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:24.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:24.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:24.317][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:24.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:24.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:24.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:24.320][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:24.321][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:24.321][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:24.323][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:24.324][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:24.324][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:24.325][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:24.326][private$loadEntries] Creating entries from ids [1]: "138307".
biodb.DEBUG[2022-04-09 08:03:24.327][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:03:24.328][cch$loadFileContent] Trying to load 1 files from cache: [1]: "138307".
biodb.TRACE[2022-04-09 08:03:24.329][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:03:24.330][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:03:24.331][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:03:24.331][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:03:24.332][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:03:24.333][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:03:24.335][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:24.336][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:24.337][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:24.338][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:24.339][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:24.339][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:24.340][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:24.341][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=138307".
biodb.DEBUG[2022-04-09 08:03:24.343][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:03:24.344][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:03:24.345][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=138307".
biodb.TRACE[2022-04-09 08:03:24.762][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=138307).
biodb.DEBUG[2022-04-09 08:03:25.190][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:03:25.206][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a2610bdf009c6327ccf7d519fff16ded.content"
biodb.TRACE[2022-04-09 08:03:25.216][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a2610bdf009c6327ccf7d519fff16ded.request"
biodb.TRACE[2022-04-09 08:03:25.226][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/138307.xml"
biodb.DEBUG[2022-04-09 08:03:25.230][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:03:25.244][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:03:25.245][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:03:25.247][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:25.247][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:25.248][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:25.250][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:25.250][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:25.251][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:25.252][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:25.254][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:25.255][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:25.255][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:25.256][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:25.257][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:25.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:25.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:25.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:25.263][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:25.264][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:25.265][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:25.266][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:25.267][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:25.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:25.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:25.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:25.272][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:25.273][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:25.274][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:25.275][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:25.276][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:25.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:25.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:25.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:25.281][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:25.282][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:25.283][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:25.284][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:25.284][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:25.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:25.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:25.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:25.290][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:25.291][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:25.292][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:25.293][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:25.293][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:25.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:25.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:25.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:25.299][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:25.300][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:25.301][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:25.302][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:25.303][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:25.303][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:25.304][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:25.305][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:25.306][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:25.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:25.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:25.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:25.313][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:25.314][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:25.315][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:25.316][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:25.317][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:25.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:25.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:25.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:25.323][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:25.324][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:25.325][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:25.326][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:25.327][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:25.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:25.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:25.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:25.333][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:25.334][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:25.335][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:25.335][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:25.336][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:25.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:25.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:25.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:25.349][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:25.350][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:25.350][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:25.351][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:25.352][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:25.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:25.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:25.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:25.358][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:25.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:25.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:25.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:25.361][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:25.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:25.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:25.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:25.364][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:25.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:25.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:25.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:25.367][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:25.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:25.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:25.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:25.370][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:25.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:25.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:25.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:25.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:25.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:25.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:25.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:25.376][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:25.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:25.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:25.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:25.382][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:25.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:25.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:25.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:25.385][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:25.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:25.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:25.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:25.388][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:25.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:25.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:25.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:25.391][self$createEntryFromContent] Accession numbers: 138307.
biodb.TRACE[2022-04-09 08:03:25.392][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:25.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:25.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:25.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:25.395][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:25.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:25.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:25.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:25.398][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:25.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:25.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:25.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:25.401][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:25.402][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:25.402][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:25.404][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:25.404][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:25.405][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:25.406][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:25.407][private$loadEntries] Creating entries from ids [1]: "176803".
biodb.DEBUG[2022-04-09 08:03:25.407][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:03:25.409][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176803".
biodb.TRACE[2022-04-09 08:03:25.410][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:03:25.410][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:03:25.411][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:03:25.412][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:03:25.413][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:03:25.414][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:03:25.416][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:25.416][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:25.417][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:25.418][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:25.419][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:25.420][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:25.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:25.421][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176803".
biodb.DEBUG[2022-04-09 08:03:25.423][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:03:25.424][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:03:25.425][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176803".
biodb.TRACE[2022-04-09 08:03:25.840][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176803).
biodb.DEBUG[2022-04-09 08:03:26.267][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:03:26.274][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/648921bf283f148f1437569ccee0fc41.content"
biodb.TRACE[2022-04-09 08:03:26.293][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/648921bf283f148f1437569ccee0fc41.request"
biodb.TRACE[2022-04-09 08:03:26.302][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176803.xml"
biodb.DEBUG[2022-04-09 08:03:26.305][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:03:26.318][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:03:26.319][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:03:26.321][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:26.321][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:26.322][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:26.323][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:26.324][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:26.325][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:26.326][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:26.327][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:26.328][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:26.329][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:26.330][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:26.331][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:26.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:26.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:26.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:26.336][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:26.337][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:26.338][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:26.339][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:26.340][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:26.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:26.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:26.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:26.345][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:26.346][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:26.347][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:26.347][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:26.348][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:26.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:26.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:26.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:26.354][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:26.355][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:26.355][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:26.356][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:26.357][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:26.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:26.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:26.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:26.362][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:26.363][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:26.364][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:26.365][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:26.366][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:26.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:26.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:26.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:26.371][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:26.372][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:26.373][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:26.373][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:26.374][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:26.375][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:26.376][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:26.377][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:26.378][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:26.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:26.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:26.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:26.383][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:26.384][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:26.385][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:26.385][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:26.386][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:26.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:26.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:26.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:26.392][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:26.393][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:26.393][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:26.394][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:26.395][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:26.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:26.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:26.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:26.401][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:26.402][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:26.403][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:26.403][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:26.404][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:26.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:26.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:26.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:26.411][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:26.412][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:26.412][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:26.413][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:26.414][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:26.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:26.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:26.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:26.428][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:26.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:26.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:26.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:26.431][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:26.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:26.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:26.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:26.434][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:26.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:26.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:26.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:26.438][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:26.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:26.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:26.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:26.441][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:26.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:26.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:26.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:26.444][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:26.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:26.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:26.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:26.447][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:26.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:26.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:26.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:26.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:26.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:26.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:26.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:26.457][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:26.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:26.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:26.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:26.460][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:26.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:26.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:26.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:26.463][self$createEntryFromContent] Accession numbers: 176803.
biodb.TRACE[2022-04-09 08:03:26.464][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:26.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:26.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:26.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:26.467][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:26.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:26.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:26.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:26.471][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:26.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:26.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:26.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:26.474][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:26.475][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:26.475][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:26.477][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:26.478][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:26.478][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:26.479][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:26.480][private$loadEntries] Creating entries from ids [1]: "176962".
biodb.DEBUG[2022-04-09 08:03:26.481][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:03:26.482][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176962".
biodb.TRACE[2022-04-09 08:03:26.483][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:03:26.484][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:03:26.485][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:03:26.486][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:03:26.487][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:03:26.488][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:03:26.490][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:26.491][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:26.491][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:26.493][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:26.493][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:26.494][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:26.495][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:26.496][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176962".
biodb.DEBUG[2022-04-09 08:03:26.498][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:03:26.499][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:03:26.500][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176962".
biodb.TRACE[2022-04-09 08:03:26.916][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176962).
biodb.DEBUG[2022-04-09 08:03:27.344][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:03:27.351][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/881a0b9df4a64ff0258c2dc68959eb26.content"
biodb.TRACE[2022-04-09 08:03:27.361][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/881a0b9df4a64ff0258c2dc68959eb26.request"
biodb.TRACE[2022-04-09 08:03:27.379][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176962.xml"
biodb.DEBUG[2022-04-09 08:03:27.382][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:03:27.395][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:03:27.396][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:03:27.397][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:27.398][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:27.399][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:27.400][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:27.401][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:27.401][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:27.402][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:27.404][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:27.405][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:27.405][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.406][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:27.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:27.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:27.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:27.413][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:27.413][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:27.414][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.415][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:27.416][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:27.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:27.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:27.421][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:27.422][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:27.423][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.424][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:27.424][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:27.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:27.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:27.430][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:27.431][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:27.431][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.432][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:27.433][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:27.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:27.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:27.438][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:27.439][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:27.440][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.441][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:27.442][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:27.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:27.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:27.447][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:27.448][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:27.449][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.449][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:27.450][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:27.451][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.452][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.453][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:27.453][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:27.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:27.459][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:27.460][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:27.461][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.461][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:27.462][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:27.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:27.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:27.468][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:27.468][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:27.469][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.470][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:27.471][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:27.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:27.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:27.476][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:27.477][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:27.478][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.478][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:27.479][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:27.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:27.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:27.485][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:27.485][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:27.486][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.487][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:27.488][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:27.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:27.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:27.493][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:27.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:27.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:27.496][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:27.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:27.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:27.504][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:27.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:27.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:27.507][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:27.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:27.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:27.510][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:27.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:27.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:27.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:27.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:27.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:27.515][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:27.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:27.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:27.521][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:27.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:27.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:27.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:27.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:27.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:27.526][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:27.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:27.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:27.529][self$createEntryFromContent] Accession numbers: 176962.
biodb.TRACE[2022-04-09 08:03:27.530][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:27.533][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:27.536][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:27.557][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:03:27.559][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:03:27.560][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2022-04-09 08:03:27.561][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:03:27.562][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2022-04-09 08:03:27.578][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:27.578][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:27.579][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:27.580][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:27.581][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:27.582][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:27.582][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:27.583][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:27.586][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:27.589][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:27.592][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:27.593][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:27.594][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:27.595][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:27.596][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:27.596][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:27.597][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:27.598][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:27.601][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:27.604][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:27.607][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:27.610][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:27.613][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:27.613][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:27.614][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:27.615][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:27.616][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:27.617][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:27.617][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:27.618][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:27.621][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:27.624][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:27.631][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:27.635][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:27.638][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:27.638][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:27.639][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:27.640][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:27.641][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:27.641][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:27.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:27.643][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:27.646][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:27.648][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:27.651][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:27.654][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:27.657][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:27.658][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:27.658][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:27.660][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:27.660][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:27.661][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:27.662][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:27.662][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:27.665][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:27.668][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:27.671][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:27.672][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:27.673][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:27.674][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:27.674][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:27.675][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:27.676][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:27.676][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:27.679][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:27.682][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:27.685][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:27.686][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:27.686][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:27.687][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:27.688][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:27.689][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:27.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:27.690][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:27.693][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:27.696][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:27.699][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:27.699][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:27.700][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:27.701][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:27.702][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:27.702][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:27.703][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:27.704][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:27.707][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:27.710][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:27.714][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:27.714][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:27.715][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:27.716][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:27.717][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:27.717][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:27.718][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:27.719][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:27.722][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:27.725][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:27.728][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:27.729][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:27.729][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:27.731][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:27.731][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:27.732][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:27.733][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:27.733][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:27.736][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:27.739][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:27.742][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:27.743][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:27.743][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:27.745][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:27.746][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:27.746][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:27.747][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:27.748][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:27.751][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:27.754][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:27.761][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:27.762][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:27.762][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:27.764][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:27.765][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:27.765][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:27.766][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:27.767][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:27.770][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:27.772][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:27.775][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:27.776][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:27.776][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:27.778][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:27.778][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:27.779][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:27.779][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:27.780][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:27.783][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:27.786][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:27.789][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:27.790][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:27.790][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:27.792][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:27.792][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:27.793][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:27.794][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:27.796][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:27.799][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:27.803][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:27.806][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:27.807][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:27.808][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:27.809][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:27.810][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:27.810][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:27.811][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:27.812][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:27.815][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:27.818][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:27.821][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:27.822][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:27.823][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:27.824][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:27.825][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:27.825][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:27.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:27.827][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:27.830][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:27.833][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:27.836][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:27.837][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:27.837][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:27.838][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:27.839][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:27.840][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:27.841][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:27.841][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:27.845][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:27.847][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:27.851][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:27.851][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:27.852][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:27.853][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:27.854][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:27.855][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:27.855][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:27.856][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:27.859][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:27.862][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:27.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:27.877][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:27.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:27.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:27.880][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:27.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:27.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:27.883][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:27.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:27.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:27.885][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:27.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:27.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:27.888][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:27.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:27.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:27.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:27.933][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:03:27.935][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:03:27.936][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:03:27.937][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124*&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-04-09 08:03:28.347][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124*&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-04-09 08:03:28.772][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:03:28.779][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1eb5a44d25716d90ff717fcfe93533e3.content"
biodb.TRACE[2022-04-09 08:03:28.789][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1eb5a44d25716d90ff717fcfe93533e3.request"
biodb.DEBUG[2022-04-09 08:03:28.794][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:03:28.796][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:03:28.797][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:03:28.798][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125*&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-04-09 08:03:29.434][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125*&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-04-09 08:03:29.893][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:03:29.899][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ef91a3654a792571304ae6f83c5871b.content"
biodb.TRACE[2022-04-09 08:03:29.909][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ef91a3654a792571304ae6f83c5871b.request"
biodb.DEBUG[2022-04-09 08:03:29.913][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:29.914][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:29.915][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:29.916][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:29.917][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:29.917][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:29.918][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:29.919][private$loadEntries] Creating entries from ids [1]: "4648".
biodb.DEBUG[2022-04-09 08:03:29.920][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:03:29.921][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4648".
biodb.TRACE[2022-04-09 08:03:29.922][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:03:29.922][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:03:29.923][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:03:29.924][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:03:29.925][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:03:29.925][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:03:29.927][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:29.928][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:29.929][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:29.930][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:29.931][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:29.931][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:29.932][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:29.933][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4648".
biodb.DEBUG[2022-04-09 08:03:29.935][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:03:29.936][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:03:29.937][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4648".
biodb.TRACE[2022-04-09 08:03:30.386][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4648).
biodb.DEBUG[2022-04-09 08:03:30.813][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:03:30.820][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/844829d8afb6d338ebac906e62f6cb8e.content"
biodb.TRACE[2022-04-09 08:03:30.839][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/844829d8afb6d338ebac906e62f6cb8e.request"
biodb.TRACE[2022-04-09 08:03:30.848][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4648.xml"
biodb.DEBUG[2022-04-09 08:03:30.851][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:03:30.864][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:03:30.864][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:03:30.866][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:30.866][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:30.867][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:30.868][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:30.869][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:30.870][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:30.870][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:30.872][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:30.873][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:30.873][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:30.874][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:30.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:30.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:30.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:30.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:30.880][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:30.881][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:30.882][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:30.882][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:30.883][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:30.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:30.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:30.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:30.888][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:30.889][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:30.890][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:30.890][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:30.891][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:30.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:30.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:30.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:30.897][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:30.897][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:30.898][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:30.899][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:30.899][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:30.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:30.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:30.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:30.904][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:30.905][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:30.906][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:30.907][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:30.907][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:30.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:30.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:30.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:30.913][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:30.913][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:30.914][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:30.915][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:30.916][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:30.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:30.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:30.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:30.921][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:30.922][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:30.923][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:30.923][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:30.924][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:30.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:30.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:30.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:30.929][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:30.930][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:30.931][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:30.932][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:30.932][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:30.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:30.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:30.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:30.938][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:30.939][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:30.939][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:30.940][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:30.941][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:30.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:30.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:30.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:30.946][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:30.947][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:30.948][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:30.948][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:30.949][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:30.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:30.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:30.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:30.955][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:30.955][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:30.956][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:30.957][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:30.958][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:30.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:30.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:30.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:30.963][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:30.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:30.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:30.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:30.970][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:30.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:30.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:30.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:30.973][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:30.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:30.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:30.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:30.976][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:30.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:30.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:30.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:30.979][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:30.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:30.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:30.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:30.982][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:30.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:30.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:30.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:30.984][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:30.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:30.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:30.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:30.990][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:30.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:30.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:30.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:30.992][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:30.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:30.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:30.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:30.995][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:30.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:30.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:30.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:30.998][self$createEntryFromContent] Accession numbers: 4648.
biodb.TRACE[2022-04-09 08:03:30.999][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:31.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:31.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:31.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:31.002][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:31.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:31.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:31.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:31.005][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:31.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:31.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:31.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:31.007][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:31.008][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:31.009][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:31.010][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:31.011][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:31.011][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:31.012][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:31.013][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:31.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:31.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:31.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:31.016][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:31.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:31.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:31.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:31.018][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:31.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:31.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:31.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:31.021][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:31.022][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:31.022][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:31.024][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:31.024][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:31.025][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:31.026][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:31.026][private$loadEntries] Creating entries from ids [1]: "62447".
biodb.DEBUG[2022-04-09 08:03:31.027][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:03:31.028][cch$loadFileContent] Trying to load 1 files from cache: [1]: "62447".
biodb.TRACE[2022-04-09 08:03:31.029][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:03:31.030][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:03:31.031][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:03:31.031][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:03:31.032][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:03:31.033][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:03:31.035][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:31.035][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:31.036][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:31.037][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:31.038][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:31.039][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:31.039][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:31.040][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=62447".
biodb.DEBUG[2022-04-09 08:03:31.042][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:03:31.043][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:03:31.044][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=62447".
biodb.TRACE[2022-04-09 08:03:31.456][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=62447).
biodb.DEBUG[2022-04-09 08:03:31.941][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:03:31.948][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ceadc6ac0ce91f601616e22be7c76851.content"
biodb.TRACE[2022-04-09 08:03:31.965][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ceadc6ac0ce91f601616e22be7c76851.request"
biodb.TRACE[2022-04-09 08:03:31.974][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62447.xml"
biodb.DEBUG[2022-04-09 08:03:31.978][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:03:31.991][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:03:31.991][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:03:31.993][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:31.993][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:31.994][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:31.995][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:31.996][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:31.997][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:31.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:31.999][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:32.000][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:32.000][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.001][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.002][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:32.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:32.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.007][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:32.008][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:32.009][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.009][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.010][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:32.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:32.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.015][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:32.016][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:32.017][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.017][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.018][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:32.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:32.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.023][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:32.024][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:32.025][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.025][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.026][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:32.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:32.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.031][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:32.032][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:32.033][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.033][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.034][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:32.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:32.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.040][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:32.040][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:32.041][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.042][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.043][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:32.044][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:32.044][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.045][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.046][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:32.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:32.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.051][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.052][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.053][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.053][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.054][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.060][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:32.061][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:32.061][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.062][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.063][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:32.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:32.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.068][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:32.069][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:32.070][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.071][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.071][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:32.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:32.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.077][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:32.078][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:32.078][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.079][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.080][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:32.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:32.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.085][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:32.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:32.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.093][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:32.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:32.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.095][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:32.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:32.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.098][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:32.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:32.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.101][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:32.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:32.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.104][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:32.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:32.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:32.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:32.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.112][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:32.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:32.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.115][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:32.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:32.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.118][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:32.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:32.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:32.121][self$createEntryFromContent] Accession numbers: 62447.
biodb.TRACE[2022-04-09 08:03:32.122][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.125][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.127][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:32.148][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:03:32.150][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:03:32.151][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2022-04-09 08:03:32.152][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:03:32.153][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2022-04-09 08:03:32.168][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:32.169][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:32.170][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:32.171][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:32.172][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:32.172][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:32.173][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:32.174][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.177][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.180][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:32.183][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:32.183][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:32.184][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:32.185][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:32.186][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:32.187][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:32.187][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:32.188][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.191][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.194][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.197][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.200][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:32.203][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:32.204][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:32.204][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:32.206][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:32.206][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:32.207][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:32.208][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:32.208][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.211][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.214][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.217][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.225][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:32.228][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:32.228][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:32.229][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:32.230][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:32.231][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:32.231][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:32.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:32.233][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.235][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.238][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.241][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.244][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:32.247][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:32.247][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:32.248][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:32.249][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:32.250][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:32.250][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:32.251][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:32.252][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.255][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.257][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:32.260][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:32.261][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:32.261][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:32.262][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:32.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:32.264][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:32.264][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:32.265][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.268][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.271][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:32.273][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:32.274][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:32.274][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:32.276][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:32.276][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:32.277][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:32.277][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:32.278][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.281][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.284][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:32.287][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:32.288][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:32.288][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:32.290][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:32.290][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:32.291][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:32.292][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:32.293][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.296][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.299][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:32.302][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:32.302][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:32.303][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:32.304][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:32.305][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:32.306][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:32.306][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:32.307][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.310][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.313][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:32.316][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:32.317][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:32.317][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:32.318][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:32.319][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:32.320][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:32.321][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:32.321][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.324][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.328][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:32.331][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:32.331][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:32.332][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:32.333][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:32.334][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:32.334][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:32.335][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:32.336][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.339][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.342][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:32.345][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:32.346][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:32.346][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:32.347][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:32.348][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:32.349][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:32.354][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:32.355][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.358][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.360][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:32.363][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:32.364][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:32.365][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:32.366][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:32.366][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:32.367][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:32.368][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:32.368][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.371][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.375][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:32.379][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:32.380][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:32.380][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:32.382][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:32.383][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:32.383][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:32.384][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:32.385][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.388][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.391][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:32.394][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:32.395][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:32.395][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:32.397][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:32.397][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:32.398][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:32.399][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:32.399][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.402][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.405][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:32.408][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:32.409][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:32.410][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:32.411][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:32.412][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:32.412][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:32.413][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:32.414][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.417][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.420][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:32.423][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:32.423][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:32.424][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:32.425][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:32.426][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:32.427][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:32.427][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:32.428][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.431][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.434][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:32.437][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:32.438][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:32.439][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:32.440][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:32.441][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:32.441][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:32.442][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:32.443][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.446][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.449][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:32.471][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:03:32.474][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:03:32.475][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2022-04-09 08:03:32.475][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:03:32.476][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2022-04-09 08:03:32.497][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:32.498][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:32.498][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:32.500][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:32.500][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:32.501][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:32.501][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:32.502][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.505][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.508][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:32.511][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:32.511][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:32.512][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:32.513][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:32.514][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:32.514][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:32.515][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:32.516][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.518][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.521][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.524][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.527][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:32.530][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:32.530][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:32.531][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:32.532][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:32.533][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:32.533][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:32.534][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:32.535][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.537][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.540][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.543][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.546][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:32.549][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:32.549][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:32.550][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:32.551][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:32.552][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:32.552][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:32.553][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:32.554][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.556][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.559][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.562][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.565][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:32.568][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:32.569][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:32.569][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:32.570][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:32.571][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:32.572][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:32.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:32.573][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.576][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.579][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:32.582][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:32.583][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:32.583][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:32.584][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:32.585][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:32.586][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:32.586][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:32.587][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.590][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.593][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:32.596][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:32.597][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:32.597][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:32.599][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:32.599][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:32.600][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:32.601][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:32.601][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.604][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.607][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:32.610][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:32.611][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:32.611][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:32.613][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:32.613][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:32.614][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:32.615][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:32.615][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.623][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.625][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:32.628][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:32.629][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:32.630][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:32.631][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:32.632][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:32.632][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:32.633][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:32.634][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.637][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.640][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:32.642][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:32.643][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:32.644][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:32.645][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:32.646][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:32.646][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:32.647][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:32.648][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.650][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.653][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:32.656][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:32.656][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:32.657][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:32.658][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:32.659][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:32.659][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:32.660][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:32.661][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.663][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.666][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:32.669][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:32.670][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:32.670][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:32.671][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:32.672][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:32.672][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:32.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:32.674][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.677][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.679][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:32.682][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:32.683][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:32.683][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:32.685][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:32.685][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:32.686][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:32.686][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:32.687][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.690][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.693][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:32.696][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:32.696][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:32.697][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:32.698][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:32.699][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:32.699][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:32.700][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:32.701][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.704][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.707][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:32.709][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:32.710][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:32.711][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:32.712][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:32.713][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:32.713][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:32.714][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:32.715][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.718][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.721][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:32.724][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:32.725][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:32.725][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:32.726][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:32.727][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:32.728][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:32.728][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:32.729][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.732][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.735][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:32.738][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:32.739][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:32.740][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:32.741][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:32.741][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:32.742][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:32.743][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:32.744][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.747][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.754][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:32.756][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:32.757][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:32.758][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:32.759][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:32.759][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:32.760][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:32.761][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:32.761][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.764][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.767][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.781][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:03:32.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:03:32.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-04-09 08:03:32.787][biodb::testThat]
biodb.INFO [2022-04-09 08:03:32.788][biodb::testThat] Running test function test_annotateMzValues_input_vector (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2022-04-09 08:03:32.789][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:03:32.789][biodb::testThat]
biodb.TRACE[2022-04-09 08:03:32.792][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:03:32.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:03:32.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.794][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:03:32.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:03:32.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.797][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:03:32.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:03:32.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.800][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:32.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:32.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.803][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:32.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:32.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.806][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:32.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:32.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.808][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:32.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:32.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.811][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:32.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:32.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.814][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:32.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:32.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.817][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:32.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:32.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.820][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:32.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:32.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.822][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:32.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:32.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.825][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:32.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:32.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.828][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:32.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:32.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.831][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:32.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:32.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:32.836][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:32.837][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:32.837][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:32.838][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:32.839][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:32.840][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:32.840][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:32.924][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:03:32.926][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:03:32.927][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1e3885f0c8b7bc081513880959401862".
biodb.TRACE[2022-04-09 08:03:32.928][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:03:32.929][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1e3885f0c8b7bc081513880959401862.content".
biodb.DEBUG[2022-04-09 08:03:32.931][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:03:32.933][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:03:32.934][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4b7e19492b2d1086a5dba1710a3b39b".
biodb.TRACE[2022-04-09 08:03:32.935][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:03:32.936][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f4b7e19492b2d1086a5dba1710a3b39b.content".
biodb.DEBUG[2022-04-09 08:03:32.937][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:32.938][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:32.939][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:32.940][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:32.941][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:32.941][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:32.942][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:32.943][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:32.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:32.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.945][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:32.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:32.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.948][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:32.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:32.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:32.952][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:03:32.953][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:03:32.954][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d57f841033be8ab371045edb0388ed60".
biodb.TRACE[2022-04-09 08:03:32.955][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:03:32.956][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d57f841033be8ab371045edb0388ed60.content".
biodb.DEBUG[2022-04-09 08:03:32.958][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:03:32.959][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:32.960][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:32.960][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:32.961][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:32.962][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:32.963][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:32.963][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:32.964][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:32.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:32.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.967][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:32.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:32.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.970][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:03:32.971][private$selectFields]
biodb.TRACE[2022-04-09 08:03:32.971][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:03:32.972][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:03:32.973][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:03:32.974][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:32.974][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:32.975][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.976][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.977][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:32.977][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:32.978][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.979][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.979][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:03:32.980][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:03:32.981][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:32.982][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:32.982][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.983][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.984][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:03:32.985][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:32.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:32.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.988][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:32.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:32.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.990][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:32.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:32.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:33.005][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-04-09 08:03:33.005][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:03:33.006][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:03:33.008][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:33.008][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:33.009][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:33.010][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:33.011][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:33.012][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:33.012][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:33.089][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:03:33.092][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:03:33.092][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:03:33.093][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-04-09 08:03:33.534][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-04-09 08:03:34.015][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:03:34.029][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3f1d442725dcc6ae0abe5c87cfaad307.content"
biodb.TRACE[2022-04-09 08:03:34.051][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3f1d442725dcc6ae0abe5c87cfaad307.request"
biodb.DEBUG[2022-04-09 08:03:34.059][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:34.067][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:34.068][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:34.069][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:34.070][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:34.071][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:34.071][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:34.072][private$loadEntries] Creating entries from ids [1]: "113227".
biodb.DEBUG[2022-04-09 08:03:34.073][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:03:34.074][cch$loadFileContent] Trying to load 1 files from cache: [1]: "113227".
biodb.TRACE[2022-04-09 08:03:34.075][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:03:34.076][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:03:34.077][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:03:34.077][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:03:34.078][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:03:34.079][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:03:34.081][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:34.081][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:34.082][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:34.083][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:34.084][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:34.084][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:34.085][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:34.086][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=113227".
biodb.DEBUG[2022-04-09 08:03:34.088][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:03:34.088][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:03:34.089][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=113227".
biodb.TRACE[2022-04-09 08:03:34.528][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=113227).
biodb.DEBUG[2022-04-09 08:03:35.016][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:03:35.044][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ed496dac459a2ba62e671edbcae22326.content"
biodb.TRACE[2022-04-09 08:03:35.065][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ed496dac459a2ba62e671edbcae22326.request"
biodb.TRACE[2022-04-09 08:03:35.089][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/113227.xml"
biodb.DEBUG[2022-04-09 08:03:35.096][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:03:35.114][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:03:35.115][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:03:35.117][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:35.117][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:35.118][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:35.120][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:35.120][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:35.121][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:35.122][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:35.124][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:35.125][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:35.125][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:35.126][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:35.127][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:35.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:35.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:35.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:35.138][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:35.138][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:35.139][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:35.140][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:35.141][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:35.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:35.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:35.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:35.151][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:35.151][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:35.152][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:35.153][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:35.154][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:35.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:35.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:35.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:35.169][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:35.170][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:35.170][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:35.171][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:35.172][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:35.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:35.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:35.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:35.181][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:35.182][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:35.183][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:35.183][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:35.184][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:35.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:35.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:35.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:35.193][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:35.194][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:35.195][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:35.195][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:35.196][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:35.197][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:35.198][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:35.199][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:35.199][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:35.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:35.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:35.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:35.208][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:35.209][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:35.210][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:35.211][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:35.211][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:35.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:35.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:35.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:35.220][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:35.221][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:35.222][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:35.222][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:35.224][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:35.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:35.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:35.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:35.232][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:35.233][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:35.234][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:35.235][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:35.236][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:35.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:35.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:35.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:35.245][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:35.245][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:35.246][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:35.247][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:35.248][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:35.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:35.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:35.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:35.257][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:35.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:35.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:35.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:35.260][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:35.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:35.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:35.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:35.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:35.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:35.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:35.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:35.266][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:35.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:35.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:35.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:35.269][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:35.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:35.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:35.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:35.272][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:35.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:35.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:35.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:35.275][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:35.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:35.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:35.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:35.285][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:35.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:35.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:35.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:35.292][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:35.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:35.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:35.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:35.295][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:35.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:35.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:35.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:35.298][self$createEntryFromContent] Accession numbers: 113227.
biodb.TRACE[2022-04-09 08:03:35.299][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:35.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:35.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:35.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:35.302][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:35.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:35.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:35.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:35.305][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:35.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:35.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:35.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:35.308][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:35.308][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:35.309][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:35.310][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:35.311][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:35.312][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:35.312][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:35.313][private$loadEntries] Creating entries from ids [1]: "169712".
biodb.DEBUG[2022-04-09 08:03:35.314][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:03:35.315][cch$loadFileContent] Trying to load 1 files from cache: [1]: "169712".
biodb.TRACE[2022-04-09 08:03:35.316][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:03:35.317][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:03:35.318][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:03:35.318][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:03:35.319][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:03:35.320][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:03:35.322][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:35.323][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:35.323][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:35.325][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:35.325][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:35.326][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:35.327][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:35.327][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169712".
biodb.DEBUG[2022-04-09 08:03:35.329][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:03:35.330][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:03:35.331][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169712".
biodb.TRACE[2022-04-09 08:03:35.778][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169712).
biodb.DEBUG[2022-04-09 08:03:36.272][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:03:36.287][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6e52d7b9d801aec68d97cc03bd4acc90.content"
biodb.TRACE[2022-04-09 08:03:36.310][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6e52d7b9d801aec68d97cc03bd4acc90.request"
biodb.TRACE[2022-04-09 08:03:36.331][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169712.xml"
biodb.DEBUG[2022-04-09 08:03:36.338][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:03:36.357][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:03:36.358][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:03:36.360][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:36.360][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:36.361][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:36.363][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:36.363][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:36.364][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:36.365][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:36.367][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:36.368][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:36.368][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:36.369][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:36.370][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:36.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:36.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:36.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:36.380][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:36.381][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:36.387][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:36.387][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:36.389][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:36.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:36.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:36.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:36.398][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:36.399][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:36.399][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:36.400][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:36.401][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:36.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:36.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:36.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:36.410][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:36.411][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:36.412][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:36.412][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:36.413][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:36.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:36.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:36.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:36.423][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:36.423][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:36.424][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:36.425][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:36.426][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:36.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:36.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:36.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:36.435][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:36.436][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:36.437][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:36.437][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:36.438][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:36.439][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:36.440][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:36.441][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:36.442][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:36.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:36.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:36.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:36.451][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:36.452][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:36.453][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:36.454][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:36.455][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:36.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:36.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:36.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:36.464][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:36.465][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:36.466][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:36.467][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:36.468][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:36.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:36.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:36.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:36.478][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:36.479][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:36.480][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:36.480][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:36.481][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:36.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:36.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:36.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:36.492][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:36.493][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:36.493][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:36.494][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:36.495][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:36.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:36.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:36.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:36.505][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:36.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:36.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:36.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:36.509][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:36.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:36.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:36.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:36.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:36.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:36.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:36.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:36.515][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:36.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:36.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:36.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:36.518][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:36.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:36.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:36.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:36.526][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:36.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:36.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:36.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:36.530][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:36.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:36.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:36.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:36.545][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:36.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:36.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:36.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:36.548][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:36.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:36.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:36.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:36.551][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:36.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:36.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:36.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:36.554][self$createEntryFromContent] Accession numbers: 169712.
biodb.TRACE[2022-04-09 08:03:36.555][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:36.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:36.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:36.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:36.558][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:36.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:36.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:36.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:36.561][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:36.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:36.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:36.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:36.565][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:03:36.567][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:03:36.568][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:03:36.569][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-04-09 08:03:37.037][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-04-09 08:03:37.508][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:03:37.522][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef9eda9e8faa68b5f4644b265e186796.content"
biodb.TRACE[2022-04-09 08:03:37.544][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef9eda9e8faa68b5f4644b265e186796.request"
biodb.DEBUG[2022-04-09 08:03:37.552][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:37.553][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:37.554][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:37.555][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:37.556][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:37.557][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:37.557][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:37.558][private$loadEntries] Creating entries from ids [1]: "4781".
biodb.DEBUG[2022-04-09 08:03:37.559][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:03:37.560][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4781".
biodb.TRACE[2022-04-09 08:03:37.561][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:03:37.562][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:03:37.563][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:03:37.564][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:03:37.565][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:03:37.565][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:03:37.567][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:37.568][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:37.569][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:37.570][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:37.571][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:37.571][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:37.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:37.573][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4781".
biodb.DEBUG[2022-04-09 08:03:37.575][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:03:37.576][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:03:37.577][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4781".
biodb.TRACE[2022-04-09 08:03:38.030][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4781).
biodb.DEBUG[2022-04-09 08:03:38.589][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:03:38.604][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e4869054c906476bc1e4ece10c7e53cc.content"
biodb.TRACE[2022-04-09 08:03:38.626][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e4869054c906476bc1e4ece10c7e53cc.request"
biodb.TRACE[2022-04-09 08:03:38.647][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4781.xml"
biodb.DEBUG[2022-04-09 08:03:38.662][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:03:38.679][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:03:38.680][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:03:38.682][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:38.682][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:38.683][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:38.684][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:38.685][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:38.686][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:38.686][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:38.688][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:38.689][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:38.690][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:38.691][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:38.692][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:38.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:38.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:38.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:38.701][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:38.702][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:38.703][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:38.704][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:38.705][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:38.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:38.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:38.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:38.714][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:38.715][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:38.716][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:38.716][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:38.718][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:38.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:38.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:38.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:38.727][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:38.728][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:38.729][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:38.729][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:38.730][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:38.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:38.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:38.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:38.740][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:38.741][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:38.742][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:38.743][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:38.744][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:38.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:38.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:38.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:38.754][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:38.754][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:38.755][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:38.756][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:38.757][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:38.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:38.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:38.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:38.767][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:38.768][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:38.769][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:38.769][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:38.770][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:38.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:38.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:38.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:38.780][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:38.781][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:38.782][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:38.783][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:38.784][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:38.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:38.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:38.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:38.803][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:38.804][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:38.805][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:38.806][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:38.807][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:38.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:38.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:38.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:38.817][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:38.817][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:38.818][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:38.819][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:38.820][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:38.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:38.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:38.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:38.829][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:38.830][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:38.831][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:38.832][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:38.833][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:38.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:38.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:38.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:38.842][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:38.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:38.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:38.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:38.845][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:38.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:38.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:38.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:38.848][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:38.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:38.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:38.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:38.851][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:38.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:38.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:38.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:38.854][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:38.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:38.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:38.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:38.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:38.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:38.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:38.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:38.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:38.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:38.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:38.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:38.871][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:38.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:38.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:38.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:38.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:38.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:38.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:38.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:38.877][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:38.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:38.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:38.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:38.880][self$createEntryFromContent] Accession numbers: 4781.
biodb.TRACE[2022-04-09 08:03:38.881][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:38.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:38.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:38.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:38.884][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:38.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:38.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:38.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:38.887][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:38.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:38.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:38.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:38.890][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:38.891][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:38.892][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:38.893][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:38.894][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:38.895][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:38.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:38.896][private$loadEntries] Creating entries from ids [1]: "16587".
biodb.DEBUG[2022-04-09 08:03:38.897][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:03:38.898][cch$loadFileContent] Trying to load 1 files from cache: [1]: "16587".
biodb.TRACE[2022-04-09 08:03:38.899][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:03:38.901][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:03:38.901][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:03:38.902][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:03:38.903][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:03:38.904][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:03:38.906][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:38.907][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:38.907][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:38.909][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:38.910][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:38.910][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:38.911][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:38.912][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=16587".
biodb.DEBUG[2022-04-09 08:03:38.914][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:03:38.915][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:03:38.916][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=16587".
biodb.TRACE[2022-04-09 08:03:39.358][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=16587).
biodb.DEBUG[2022-04-09 08:03:39.837][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:03:39.851][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6012905c0932919c069ecb5afc0b487b.content"
biodb.TRACE[2022-04-09 08:03:39.881][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6012905c0932919c069ecb5afc0b487b.request"
biodb.TRACE[2022-04-09 08:03:39.902][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/16587.xml"
biodb.DEBUG[2022-04-09 08:03:39.909][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:03:39.926][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:03:39.927][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:03:39.929][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:39.929][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:39.930][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:39.931][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:39.932][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:39.933][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:39.933][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:39.935][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:39.936][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:39.937][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:39.938][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:39.939][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:39.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:39.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:39.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:39.948][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:39.949][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:39.950][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:39.950][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:39.951][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:39.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:39.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:39.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:39.961][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:39.961][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:39.962][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:39.963][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:39.964][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:39.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:39.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:39.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:39.973][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:39.974][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:39.975][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:39.975][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:39.976][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:39.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:39.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:39.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:39.986][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:39.987][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:39.987][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:39.988][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:39.989][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:39.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:39.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:39.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:39.999][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:39.999][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:40.000][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:40.001][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:40.002][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:40.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:40.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:40.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:40.017][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:40.017][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:40.018][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:40.019][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:40.020][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:40.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:40.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:40.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:40.029][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:40.030][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:40.030][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:40.031][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:40.032][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:40.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:40.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:40.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:40.041][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:40.042][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:40.042][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:40.043][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:40.044][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:40.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:40.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:40.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:40.053][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:40.054][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:40.055][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:40.055][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:40.056][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:40.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:40.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:40.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:40.065][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:40.066][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:40.066][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:40.067][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:40.068][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:40.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:40.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:40.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:40.077][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:40.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:40.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:40.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:40.080][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:40.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:40.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:40.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:40.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:40.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:40.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:40.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:40.086][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:40.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:40.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:40.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:40.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:40.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:40.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:40.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:40.092][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:40.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:40.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:40.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:40.095][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:40.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:40.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:40.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:40.105][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:40.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:40.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:40.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:40.108][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:40.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:40.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:40.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:40.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:40.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:40.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:40.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:40.115][self$createEntryFromContent] Accession numbers: 16587.
biodb.TRACE[2022-04-09 08:03:40.115][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:40.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:40.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:40.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:40.118][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:40.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:40.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:40.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:40.122][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:40.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:40.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:40.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:40.125][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:40.125][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:40.126][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:40.128][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:40.128][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:40.129][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:40.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:40.131][private$loadEntries] Creating entries from ids [1]: "19804".
biodb.DEBUG[2022-04-09 08:03:40.131][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:03:40.133][cch$loadFileContent] Trying to load 1 files from cache: [1]: "19804".
biodb.TRACE[2022-04-09 08:03:40.134][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:03:40.135][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:03:40.136][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:03:40.136][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:03:40.137][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:03:40.138][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:03:40.140][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:40.141][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:40.146][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:40.148][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:40.149][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:40.150][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:40.151][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:40.152][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=19804".
biodb.DEBUG[2022-04-09 08:03:40.154][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:03:40.154][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:03:40.156][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=19804".
biodb.TRACE[2022-04-09 08:03:40.716][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=19804).
biodb.DEBUG[2022-04-09 08:03:41.296][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:03:41.319][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef7e014212775cbaa9299e60f32b2bcd.content"
biodb.TRACE[2022-04-09 08:03:41.341][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef7e014212775cbaa9299e60f32b2bcd.request"
biodb.TRACE[2022-04-09 08:03:41.361][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/19804.xml"
biodb.DEBUG[2022-04-09 08:03:41.369][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:03:41.386][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:03:41.387][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:03:41.389][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:41.389][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:41.390][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:41.392][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:41.392][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:41.393][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:41.394][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:41.395][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:41.396][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:41.397][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:41.398][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:41.399][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:41.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:41.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:41.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:41.409][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:41.410][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:41.411][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:41.412][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:41.413][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:41.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:41.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:41.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:41.423][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:41.423][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:41.424][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:41.425][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:41.426][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:41.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:41.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:41.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:41.436][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:41.437][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:41.437][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:41.438][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:41.439][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:41.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:41.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:41.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:41.455][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:41.456][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:41.457][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:41.457][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:41.458][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:41.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:41.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:41.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:41.468][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:41.469][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:41.469][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:41.470][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:41.471][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:41.472][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:41.472][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:41.473][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:41.474][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:41.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:41.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:41.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:41.483][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:41.484][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:41.485][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:41.485][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:41.486][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:41.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:41.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:41.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:41.495][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:41.496][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:41.497][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:41.498][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:41.499][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:41.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:41.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:41.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:41.508][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:41.509][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:41.509][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:41.510][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:41.511][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:41.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:41.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:41.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:41.520][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:41.521][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:41.522][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:41.522][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:41.523][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:41.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:41.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:41.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:41.532][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:41.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:41.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:41.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:41.536][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:41.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:41.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:41.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:41.539][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:41.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:41.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:41.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:41.542][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:41.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:41.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:41.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:41.545][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:41.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:41.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:41.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:41.548][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:41.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:41.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:41.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:41.551][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:41.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:41.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:41.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:41.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:41.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:41.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:41.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:41.565][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:41.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:41.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:41.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:41.568][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:41.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:41.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:41.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:41.571][self$createEntryFromContent] Accession numbers: 19804.
biodb.TRACE[2022-04-09 08:03:41.572][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:41.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:41.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:41.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:41.575][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:41.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:41.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:41.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:41.578][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:41.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:41.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:41.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:41.609][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:03:41.626][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:41.627][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:41.628][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:41.629][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:41.630][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:41.630][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:41.631][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:41.632][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:41.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:41.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:41.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:41.635][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:41.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:41.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:41.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:41.638][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:03:41.639][private$selectFields]
biodb.TRACE[2022-04-09 08:03:41.640][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:03:41.640][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:03:41.641][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:03:41.642][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:41.643][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:41.643][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:41.644][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:41.645][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:41.646][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:41.646][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:41.647][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:41.648][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:03:41.649][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:03:41.649][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:41.650][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:41.651][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:41.652][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:41.652][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:03:41.653][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:41.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:41.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:41.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:41.656][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:41.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:41.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:41.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:41.659][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:41.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:41.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:41.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:41.663][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2022-04-09 08:03:41.664][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:41.665][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:41.665][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:41.667][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:41.668][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:41.669][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:41.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:41.670][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:41.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:41.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:41.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:41.673][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:41.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:41.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:41.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:41.677][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:03:41.677][private$selectFields]
biodb.TRACE[2022-04-09 08:03:41.678][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:03:41.679][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:03:41.680][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:03:41.680][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:41.681][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:41.682][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:41.683][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:41.684][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:41.684][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:41.685][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:41.686][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:41.687][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:03:41.688][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:03:41.689][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:41.689][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:41.690][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:41.691][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:41.692][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:03:41.693][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:41.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:41.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:41.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:41.696][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:41.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:41.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:41.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:41.699][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:41.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:41.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:41.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:41.703][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2022-04-09 08:03:41.703][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:41.704][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:41.705][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:41.706][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:41.707][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:41.708][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:41.709][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:41.710][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:41.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:41.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:41.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:41.713][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:41.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:41.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:41.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:41.722][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:03:41.723][private$selectFields]
biodb.TRACE[2022-04-09 08:03:41.723][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:03:41.724][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:03:41.725][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:03:41.726][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:41.726][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:41.727][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:41.728][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:41.729][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:41.729][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:41.730][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:41.731][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:41.732][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:03:41.732][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:03:41.733][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:41.734][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:41.735][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:41.735][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:41.736][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:03:41.737][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:41.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:41.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:41.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:41.740][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:41.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:41.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:41.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:41.743][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:41.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:41.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:41.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:41.746][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2022-04-09 08:03:41.747][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:03:41.747][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:03:41.749][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:41.750][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:41.750][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:41.752][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:41.752][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:41.753][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:41.754][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:41.839][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:03:41.841][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:03:41.842][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:03:41.843][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-04-09 08:03:42.330][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-04-09 08:03:42.797][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:03:42.812][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f077e512e38828ca0970d6a9a2df40b1.content"
biodb.TRACE[2022-04-09 08:03:42.842][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f077e512e38828ca0970d6a9a2df40b1.request"
biodb.DEBUG[2022-04-09 08:03:42.850][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:42.851][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:42.852][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:42.853][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:42.854][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:42.854][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:42.855][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:42.856][private$loadEntries] Creating entries from ids [1]: "159630".
biodb.DEBUG[2022-04-09 08:03:42.857][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:03:42.858][cch$loadFileContent] Trying to load 1 files from cache: [1]: "159630".
biodb.TRACE[2022-04-09 08:03:42.859][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:03:42.860][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:03:42.861][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:03:42.861][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:03:42.862][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:03:42.863][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:03:42.865][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:42.865][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:42.866][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:42.867][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:42.868][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:42.869][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:42.869][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:42.870][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=159630".
biodb.DEBUG[2022-04-09 08:03:42.872][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:03:42.873][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:03:42.874][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=159630".
biodb.TRACE[2022-04-09 08:03:43.327][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=159630).
biodb.DEBUG[2022-04-09 08:03:43.805][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:03:43.820][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f9497c6792bdb2528746e6a81b02589e.content"
biodb.TRACE[2022-04-09 08:03:43.841][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f9497c6792bdb2528746e6a81b02589e.request"
biodb.TRACE[2022-04-09 08:03:43.863][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/159630.xml"
biodb.DEBUG[2022-04-09 08:03:43.870][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:03:43.889][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:03:43.891][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:03:43.892][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:43.893][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:43.894][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:43.895][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:43.896][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:43.897][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:43.897][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:43.899][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:43.900][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:43.901][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:43.902][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:43.903][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:43.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:43.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:43.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:43.920][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:43.921][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:43.922][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:43.923][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:43.924][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:43.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:43.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:43.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:43.934][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:43.935][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:43.935][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:43.936][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:43.937][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:43.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:43.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:43.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:43.947][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:43.948][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:43.949][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:43.949][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:43.950][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:43.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:43.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:43.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:43.960][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:43.960][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:43.961][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:43.962][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:43.963][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:43.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:43.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:43.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:43.972][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:43.973][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:43.974][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:43.975][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:43.976][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:43.976][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:43.977][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:43.978][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:43.979][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:43.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:43.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:43.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:43.989][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:43.989][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:43.990][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:43.991][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:43.992][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:43.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:43.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:43.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:44.002][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:44.003][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:44.003][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:44.004][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:44.005][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:44.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:44.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:44.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:44.015][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:44.016][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:44.017][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:44.018][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:44.019][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:44.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:44.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:44.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:44.028][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:44.029][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:44.030][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:44.031][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:44.032][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:44.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:44.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:44.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:44.041][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:44.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:44.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:44.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:44.050][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:44.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:44.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:44.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:44.053][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:44.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:44.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:44.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:44.056][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:44.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:44.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:44.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:44.059][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:44.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:44.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:44.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:44.062][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:44.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:44.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:44.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:44.065][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:44.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:44.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:44.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:44.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:44.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:44.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:44.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:44.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:44.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:44.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:44.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:44.082][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:44.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:44.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:44.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:44.085][self$createEntryFromContent] Accession numbers: 159630.
biodb.TRACE[2022-04-09 08:03:44.085][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:44.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:44.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:44.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:44.088][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:44.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:44.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:44.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:44.091][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:44.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:44.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:44.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:44.094][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:44.095][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:44.096][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:44.097][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:44.098][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:44.099][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:44.099][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:44.100][private$loadEntries] Creating entries from ids [1]: "160202".
biodb.DEBUG[2022-04-09 08:03:44.101][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:03:44.102][cch$loadFileContent] Trying to load 1 files from cache: [1]: "160202".
biodb.TRACE[2022-04-09 08:03:44.103][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:03:44.104][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:03:44.105][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:03:44.105][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:03:44.106][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:03:44.107][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:03:44.109][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:44.110][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:44.110][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:44.112][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:44.113][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:44.113][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:44.114][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:44.115][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160202".
biodb.DEBUG[2022-04-09 08:03:44.117][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:03:44.118][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:03:44.119][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160202".
biodb.TRACE[2022-04-09 08:03:44.563][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160202).
biodb.DEBUG[2022-04-09 08:03:45.039][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:03:45.053][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1de9586ccaafdf8e637928dc3e313d63.content"
biodb.TRACE[2022-04-09 08:03:45.075][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1de9586ccaafdf8e637928dc3e313d63.request"
biodb.TRACE[2022-04-09 08:03:45.096][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160202.xml"
biodb.DEBUG[2022-04-09 08:03:45.104][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:03:45.129][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:03:45.130][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:03:45.132][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:45.133][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:45.133][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:45.135][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:45.135][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:45.136][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:45.137][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:45.139][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:45.139][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:45.140][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:45.141][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:45.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:45.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:45.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:45.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:45.152][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:45.153][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:45.153][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:45.154][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:45.155][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:45.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:45.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:45.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:45.164][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:45.165][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:45.166][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:45.166][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:45.167][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:45.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:45.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:45.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:45.177][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:45.177][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:45.178][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:45.179][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:45.180][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:45.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:45.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:45.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:45.189][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:45.190][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:45.191][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:45.191][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:45.192][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:45.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:45.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:45.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:45.202][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:45.203][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:45.203][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:45.204][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:45.205][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:45.206][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:45.207][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:45.207][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:45.208][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:45.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:45.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:45.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:45.218][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:45.219][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:45.220][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:45.220][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:45.221][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:45.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:45.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:45.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:45.231][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:45.232][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:45.232][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:45.233][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:45.234][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:45.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:45.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:45.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:45.244][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:45.245][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:45.245][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:45.246][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:45.247][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:45.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:45.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:45.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:45.262][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:45.263][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:45.263][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:45.264][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:45.265][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:45.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:45.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:45.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:45.274][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:45.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:45.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:45.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:45.277][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:45.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:45.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:45.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:45.280][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:45.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:45.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:45.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:45.283][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:45.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:45.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:45.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:45.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:45.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:45.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:45.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:45.289][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:45.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:45.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:45.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:45.292][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:45.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:45.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:45.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:45.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:45.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:45.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:45.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:45.304][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:45.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:45.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:45.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:45.307][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:45.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:45.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:45.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:45.310][self$createEntryFromContent] Accession numbers: 160202.
biodb.TRACE[2022-04-09 08:03:45.311][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:45.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:45.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:45.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:45.314][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:45.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:45.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:45.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:45.316][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:45.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:45.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:45.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:45.319][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:45.320][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:45.321][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:45.322][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:45.323][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:45.324][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:45.324][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:45.325][private$loadEntries] Creating entries from ids [1]: "160393".
biodb.DEBUG[2022-04-09 08:03:45.326][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:03:45.327][cch$loadFileContent] Trying to load 1 files from cache: [1]: "160393".
biodb.TRACE[2022-04-09 08:03:45.328][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:03:45.329][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:03:45.330][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:03:45.330][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:03:45.331][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:03:45.332][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:03:45.334][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:45.335][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:45.335][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:45.337][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:45.338][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:45.338][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:45.339][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:45.340][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160393".
biodb.DEBUG[2022-04-09 08:03:45.342][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:03:45.343][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:03:45.344][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160393".
biodb.TRACE[2022-04-09 08:03:45.793][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160393).
biodb.DEBUG[2022-04-09 08:03:46.267][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:03:46.281][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e0266c32050b31cda3d5e01c2d907fcd.content"
biodb.TRACE[2022-04-09 08:03:46.303][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e0266c32050b31cda3d5e01c2d907fcd.request"
biodb.TRACE[2022-04-09 08:03:46.332][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160393.xml"
biodb.DEBUG[2022-04-09 08:03:46.340][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:03:46.357][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:03:46.358][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:03:46.359][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:46.360][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:46.361][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:46.362][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:46.363][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:46.364][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:46.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:46.366][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:46.367][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:46.368][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:46.368][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:46.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:46.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:46.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:46.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:46.379][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:46.379][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:46.380][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:46.381][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:46.382][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:46.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:46.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:46.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:46.391][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:46.392][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:46.392][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:46.393][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:46.394][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:46.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:46.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:46.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:46.404][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:46.404][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:46.405][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:46.406][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:46.407][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:46.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:46.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:46.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:46.416][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:46.417][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:46.418][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:46.418][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:46.419][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:46.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:46.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:46.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:46.429][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:46.430][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:46.430][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:46.431][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:46.432][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:46.433][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:46.434][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:46.434][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:46.435][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:46.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:46.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:46.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:46.445][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:46.446][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:46.446][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:46.447][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:46.448][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:46.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:46.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:46.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:46.470][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:46.470][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:46.471][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:46.472][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:46.473][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:46.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:46.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:46.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:46.482][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:46.483][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:46.484][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:46.485][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:46.485][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:46.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:46.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:46.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:46.494][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:46.495][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:46.496][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:46.497][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:46.498][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:46.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:46.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:46.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:46.507][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:46.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:46.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:46.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:46.509][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:46.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:46.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:46.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:46.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:46.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:46.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:46.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:46.515][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:46.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:46.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:46.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:46.518][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:46.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:46.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:46.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:46.521][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:46.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:46.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:46.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:46.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:46.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:46.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:46.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:46.534][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:46.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:46.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:46.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:46.537][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:46.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:46.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:46.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:46.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:46.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:46.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:46.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:46.543][self$createEntryFromContent] Accession numbers: 160393.
biodb.TRACE[2022-04-09 08:03:46.543][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:46.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:46.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:46.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:46.546][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:46.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:46.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:46.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:46.549][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:46.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:46.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:46.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:46.552][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:46.553][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:46.554][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:46.555][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:46.556][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:46.557][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:46.557][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:46.558][private$loadEntries] Creating entries from ids [1]: "160991".
biodb.DEBUG[2022-04-09 08:03:46.559][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:03:46.560][cch$loadFileContent] Trying to load 1 files from cache: [1]: "160991".
biodb.TRACE[2022-04-09 08:03:46.561][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:03:46.562][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:03:46.563][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:03:46.564][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:03:46.565][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:03:46.566][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:03:46.568][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:46.568][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:46.569][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:46.570][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:46.571][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:46.572][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:46.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:46.573][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160991".
biodb.DEBUG[2022-04-09 08:03:46.575][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:03:46.576][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:03:46.577][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160991".
biodb.TRACE[2022-04-09 08:03:47.026][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160991).
biodb.DEBUG[2022-04-09 08:03:47.488][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:03:47.503][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6bad8d3e957240d90a71edc1329f8f37.content"
biodb.TRACE[2022-04-09 08:03:47.535][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6bad8d3e957240d90a71edc1329f8f37.request"
biodb.TRACE[2022-04-09 08:03:47.557][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160991.xml"
biodb.DEBUG[2022-04-09 08:03:47.564][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:03:47.581][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:03:47.582][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:03:47.584][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:47.584][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:47.585][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:47.586][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:47.587][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:47.588][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:47.588][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:47.590][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:47.591][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:47.592][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:47.592][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:47.593][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:47.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:47.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:47.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:47.603][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:47.604][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:47.605][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:47.606][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:47.607][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:47.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:47.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:47.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:47.616][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:47.617][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:47.617][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:47.618][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:47.619][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:47.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:47.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:47.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:47.628][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:47.629][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:47.630][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:47.631][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:47.632][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:47.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:47.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:47.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:47.641][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:47.642][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:47.643][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:47.644][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:47.645][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:47.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:47.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:47.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:47.654][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:47.655][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:47.656][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:47.656][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:47.657][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:47.658][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:47.659][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:47.660][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:47.661][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:47.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:47.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:47.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:47.676][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:47.677][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:47.677][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:47.678][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:47.679][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:47.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:47.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:47.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:47.688][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:47.689][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:47.690][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:47.690][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:47.691][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:47.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:47.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:47.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:47.700][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:47.701][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:47.702][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:47.703][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:47.704][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:47.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:47.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:47.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:47.712][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:47.713][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:47.714][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:47.715][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:47.716][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:47.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:47.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:47.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:47.725][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:47.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:47.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:47.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:47.728][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:47.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:47.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:47.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:47.731][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:47.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:47.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:47.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:47.734][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:47.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:47.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:47.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:47.737][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:47.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:47.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:47.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:47.739][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:47.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:47.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:47.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:47.742][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:47.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:47.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:47.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:47.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:47.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:47.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:47.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:47.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:47.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:47.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:47.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:47.758][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:47.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:47.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:47.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:47.761][self$createEntryFromContent] Accession numbers: 160991.
biodb.TRACE[2022-04-09 08:03:47.762][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:47.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:47.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:47.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:47.765][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:47.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:47.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:47.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:47.769][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:47.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:47.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:47.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:47.772][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:47.772][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:47.773][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:47.774][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:47.775][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:47.776][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:47.777][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:47.777][private$loadEntries] Creating entries from ids [1]: "164975".
biodb.DEBUG[2022-04-09 08:03:47.778][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:03:47.779][cch$loadFileContent] Trying to load 1 files from cache: [1]: "164975".
biodb.TRACE[2022-04-09 08:03:47.780][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:03:47.781][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:03:47.782][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:03:47.783][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:03:47.784][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:03:47.784][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:03:47.787][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:47.787][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:47.788][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:47.789][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:47.790][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:47.791][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:47.792][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:47.792][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164975".
biodb.DEBUG[2022-04-09 08:03:47.795][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:03:47.795][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:03:47.797][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164975".
biodb.TRACE[2022-04-09 08:03:48.244][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164975).
biodb.DEBUG[2022-04-09 08:03:48.742][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:03:48.757][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b1cbfaf7aef2d62dc8db3306c1521943.content"
biodb.TRACE[2022-04-09 08:03:48.789][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b1cbfaf7aef2d62dc8db3306c1521943.request"
biodb.TRACE[2022-04-09 08:03:48.810][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/164975.xml"
biodb.DEBUG[2022-04-09 08:03:48.818][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:03:48.835][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:03:48.836][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:03:48.838][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:48.838][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:48.839][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:48.841][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:48.841][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:48.842][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:48.843][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:48.845][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:48.845][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:48.846][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:48.847][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:48.848][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:48.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:48.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:48.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:48.858][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:48.859][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:48.860][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:48.861][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:48.862][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:48.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:48.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:48.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:48.872][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:48.873][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:48.873][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:48.874][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:48.875][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:48.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:48.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:48.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:48.885][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:48.886][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:48.886][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:48.887][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:48.888][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:48.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:48.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:48.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:48.898][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:48.899][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:48.899][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:48.900][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:48.901][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:48.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:48.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:48.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:48.917][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:48.918][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:48.919][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:48.920][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:48.921][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:48.922][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:48.923][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:48.923][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:48.924][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:48.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:48.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:48.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:48.934][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:48.935][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:48.936][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:48.936][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:48.937][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:48.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:48.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:48.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:48.947][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:48.948][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:48.948][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:48.949][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:48.950][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:48.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:48.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:48.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:48.959][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:48.960][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:48.961][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:48.962][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:48.963][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:48.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:48.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:48.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:48.972][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:48.973][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:48.974][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:48.974][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:48.975][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:48.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:48.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:48.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:48.985][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:48.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:48.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:48.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:48.988][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:48.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:48.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:48.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:48.991][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:48.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:48.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:48.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:48.994][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:48.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:48.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:48.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:48.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:48.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:48.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:49.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:49.001][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:49.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:49.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:49.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:49.004][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:49.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:49.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:49.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:49.014][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:49.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:49.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:49.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:49.017][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:49.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:49.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:49.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:49.021][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:49.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:49.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:49.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:49.024][self$createEntryFromContent] Accession numbers: 164975.
biodb.TRACE[2022-04-09 08:03:49.025][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:49.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:49.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:49.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:49.028][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:49.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:49.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:49.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:49.031][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:49.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:49.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:49.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:49.034][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:49.035][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:49.036][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:49.037][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:49.038][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:49.039][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:49.039][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:49.040][private$loadEntries] Creating entries from ids [1]: "164994".
biodb.DEBUG[2022-04-09 08:03:49.041][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:03:49.048][cch$loadFileContent] Trying to load 1 files from cache: [1]: "164994".
biodb.TRACE[2022-04-09 08:03:49.049][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:03:49.050][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:03:49.051][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:03:49.052][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:03:49.053][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:03:49.054][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:03:49.056][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:49.057][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:49.058][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:49.059][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:49.060][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:49.061][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:49.061][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:49.062][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164994".
biodb.DEBUG[2022-04-09 08:03:49.065][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:03:49.065][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:03:49.066][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164994".
biodb.TRACE[2022-04-09 08:03:49.510][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164994).
biodb.DEBUG[2022-04-09 08:03:50.162][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:03:50.187][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c2789f33696a1a62a1d6cd81e3041cd1.content"
biodb.TRACE[2022-04-09 08:03:50.208][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c2789f33696a1a62a1d6cd81e3041cd1.request"
biodb.TRACE[2022-04-09 08:03:50.229][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/164994.xml"
biodb.DEBUG[2022-04-09 08:03:50.237][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:03:50.254][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:03:50.255][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:03:50.257][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:50.258][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:50.258][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:50.260][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:50.261][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:50.261][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:50.262][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:50.264][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:50.265][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:50.266][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:50.266][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:50.268][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:50.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:50.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:50.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:50.278][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:50.279][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:50.280][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:50.281][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:50.282][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:50.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:50.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:50.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:50.291][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:50.292][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:50.293][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:50.294][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:50.295][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:50.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:50.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:50.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:50.310][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:50.311][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:50.312][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:50.313][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:50.314][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:50.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:50.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:50.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:50.323][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:50.324][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:50.325][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:50.326][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:50.327][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:50.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:50.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:50.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:50.336][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:50.337][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:50.337][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:50.338][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:50.339][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:50.340][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:50.341][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:50.341][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:50.342][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:50.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:50.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:50.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:50.351][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:50.352][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:50.353][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:50.354][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:50.355][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:50.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:50.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:50.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:50.364][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:50.364][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:50.365][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:50.366][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:50.367][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:50.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:50.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:50.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:50.376][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:50.377][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:50.378][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:50.379][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:50.380][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:50.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:50.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:50.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:50.389][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:50.390][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:50.391][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:50.391][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:50.393][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:50.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:50.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:50.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:50.402][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:50.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:50.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:50.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:50.405][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:50.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:50.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:50.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:50.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:50.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:50.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:50.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:50.412][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:50.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:50.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:50.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:50.415][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:50.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:50.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:50.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:50.418][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:50.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:50.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:50.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:50.422][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:50.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:50.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:50.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:50.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:50.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:50.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:50.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:50.436][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:50.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:50.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:50.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:50.439][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:50.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:50.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:50.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:50.448][self$createEntryFromContent] Accession numbers: 164994.
biodb.TRACE[2022-04-09 08:03:50.449][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:50.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:50.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:50.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:50.452][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:50.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:50.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:50.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:50.455][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:50.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:50.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:50.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:50.458][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:50.459][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:50.459][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:50.461][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:50.462][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:50.462][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:50.463][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:50.464][private$loadEntries] Creating entries from ids [1]: "169251".
biodb.DEBUG[2022-04-09 08:03:50.465][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:03:50.466][cch$loadFileContent] Trying to load 1 files from cache: [1]: "169251".
biodb.TRACE[2022-04-09 08:03:50.467][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:03:50.468][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:03:50.469][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:03:50.469][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:03:50.470][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:03:50.471][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:03:50.473][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:50.474][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:50.474][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:50.476][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:50.477][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:50.477][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:50.478][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:50.479][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169251".
biodb.DEBUG[2022-04-09 08:03:50.481][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:03:50.482][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:03:50.483][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169251".
biodb.TRACE[2022-04-09 08:03:50.939][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169251).
biodb.DEBUG[2022-04-09 08:03:51.531][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:03:51.546][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/06c85ce8d5c9a410c27ad425a575abe7.content"
biodb.TRACE[2022-04-09 08:03:51.567][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/06c85ce8d5c9a410c27ad425a575abe7.request"
biodb.TRACE[2022-04-09 08:03:51.589][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169251.xml"
biodb.DEBUG[2022-04-09 08:03:51.597][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:03:51.615][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:03:51.617][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:03:51.618][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:51.619][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:51.620][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:51.621][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:51.622][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:51.622][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:51.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:51.625][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:51.626][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:51.627][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.628][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:51.629][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:51.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:51.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:51.639][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:51.640][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:51.641][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.641][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:51.642][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:51.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:51.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:51.658][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:51.659][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:51.660][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.661][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:51.662][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:51.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:51.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:51.672][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:51.673][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:51.673][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.674][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:51.675][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:51.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:51.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:51.685][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:51.685][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:51.686][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.687][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:51.688][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:51.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:51.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:51.698][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:51.699][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:51.699][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.700][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:51.701][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:51.702][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:51.703][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.703][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:51.704][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:51.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:51.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:51.714][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:51.715][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:51.715][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.716][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:51.717][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:51.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:51.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:51.727][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:51.727][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:51.728][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.729][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:51.730][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:51.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:51.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:51.739][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:51.740][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:51.741][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.742][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:51.743][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:51.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:51.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:51.752][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:51.753][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:51.754][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.755][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:51.756][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:51.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:51.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:51.765][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:51.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:51.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:51.768][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:51.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:51.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:51.771][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:51.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:51.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:51.775][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:51.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:51.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:51.778][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:51.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:51.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:51.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:51.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:51.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:51.789][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:51.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:51.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:51.800][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:51.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:51.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:51.803][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:51.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:51.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:51.806][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:51.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:51.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:51.809][self$createEntryFromContent] Accession numbers: 169251.
biodb.TRACE[2022-04-09 08:03:51.810][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:51.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:51.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:51.813][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:51.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:51.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:51.816][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:51.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:51.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:51.820][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:03:51.822][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:03:51.823][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:03:51.824][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-04-09 08:03:52.370][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-04-09 08:03:52.854][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:03:52.868][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1f74ce81a905644d346321032fe47e5f.content"
biodb.TRACE[2022-04-09 08:03:52.890][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1f74ce81a905644d346321032fe47e5f.request"
biodb.DEBUG[2022-04-09 08:03:52.899][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:52.899][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:52.900][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:52.902][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:52.902][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:52.903][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:52.904][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:52.905][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:52.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:52.908][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:52.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:52.911][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:52.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:52.914][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:52.915][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:52.915][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:52.917][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:52.917][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:52.918][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:52.919][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:52.920][private$loadEntries] Creating entries from ids [1]: "71954".
biodb.DEBUG[2022-04-09 08:03:52.920][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:03:52.922][cch$loadFileContent] Trying to load 1 files from cache: [1]: "71954".
biodb.TRACE[2022-04-09 08:03:52.923][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:03:52.923][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:03:52.924][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:03:52.925][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:03:52.926][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:03:52.927][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:03:52.929][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:52.929][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:52.930][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:52.932][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:52.932][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:52.933][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:52.934][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:52.935][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71954".
biodb.DEBUG[2022-04-09 08:03:52.937][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:03:52.938][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:03:52.939][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71954".
biodb.TRACE[2022-04-09 08:03:53.388][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71954).
biodb.DEBUG[2022-04-09 08:03:53.875][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:03:53.888][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/58f24f0de3d9b6c69a2b349522c5c9b3.content"
biodb.TRACE[2022-04-09 08:03:53.907][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/58f24f0de3d9b6c69a2b349522c5c9b3.request"
biodb.TRACE[2022-04-09 08:03:53.934][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/71954.xml"
biodb.DEBUG[2022-04-09 08:03:53.940][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:03:53.956][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:03:53.957][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:03:53.958][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:53.958][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:53.959][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:53.960][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:53.961][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:53.962][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:53.962][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:53.964][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:53.965][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:53.965][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:53.966][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:53.967][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:53.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:53.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:53.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:53.976][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:53.976][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:53.977][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:53.978][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:53.978][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:53.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:53.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:53.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:53.987][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:53.987][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:53.988][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:53.989][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:53.990][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:53.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:53.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:53.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:53.998][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:53.999][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:53.999][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:54.000][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:54.001][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:54.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:54.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:54.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:54.009][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:54.010][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:54.010][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:54.011][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:54.012][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:54.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:54.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:54.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:54.020][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:54.021][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:54.022][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:54.022][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:54.023][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:54.024][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:54.025][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:54.025][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:54.026][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:54.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:54.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:54.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:54.039][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:54.040][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:54.040][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:54.041][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:54.042][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:54.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:54.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:54.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:54.051][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:54.052][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:54.052][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:54.053][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:54.054][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:54.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:54.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:54.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:54.062][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:54.063][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:54.064][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:54.064][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:54.065][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:54.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:54.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:54.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:54.073][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:54.074][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:54.075][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:54.075][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:54.076][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:54.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:54.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:54.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:54.084][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:54.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:54.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:54.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:54.087][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:54.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:54.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:54.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:54.090][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:54.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:54.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:54.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:54.092][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:54.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:54.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:54.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:54.095][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:54.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:54.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:54.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:54.098][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:54.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:54.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:54.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:54.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:54.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:54.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:54.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:54.109][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:54.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:54.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:54.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:54.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:54.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:54.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:54.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:54.114][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:54.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:54.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:54.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:54.117][self$createEntryFromContent] Accession numbers: 71954.
biodb.TRACE[2022-04-09 08:03:54.117][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:54.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:54.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:54.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:54.120][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:54.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:54.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:54.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:54.123][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:54.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:54.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:54.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:54.126][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:03:54.128][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:03:54.129][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:03:54.130][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-04-09 08:03:54.591][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-04-09 08:03:55.447][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:03:55.462][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d7672f179ff5d0339b4462dafc99279b.content"
biodb.TRACE[2022-04-09 08:03:55.484][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d7672f179ff5d0339b4462dafc99279b.request"
biodb.DEBUG[2022-04-09 08:03:55.503][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:55.504][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:55.505][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:55.506][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:55.507][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:55.508][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:55.509][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:55.509][private$loadEntries] Creating entries from ids [1]: "636".
biodb.DEBUG[2022-04-09 08:03:55.510][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:03:55.511][cch$loadFileContent] Trying to load 1 files from cache: [1]: "636".
biodb.TRACE[2022-04-09 08:03:55.512][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:03:55.513][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:03:55.514][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:03:55.515][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:03:55.516][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:03:55.516][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:03:55.518][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:55.519][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:55.520][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:55.521][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:55.522][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:55.522][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:55.523][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:55.524][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=636".
biodb.DEBUG[2022-04-09 08:03:55.526][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:03:55.527][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:03:55.528][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=636".
biodb.TRACE[2022-04-09 08:03:55.970][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=636).
biodb.DEBUG[2022-04-09 08:03:56.474][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:03:56.488][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ccb008951a89970d7f0e2dfe6ae3860d.content"
biodb.TRACE[2022-04-09 08:03:56.509][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ccb008951a89970d7f0e2dfe6ae3860d.request"
biodb.TRACE[2022-04-09 08:03:56.529][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/636.xml"
biodb.DEBUG[2022-04-09 08:03:56.537][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:03:56.555][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:03:56.556][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:03:56.558][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:56.559][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:56.559][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:56.561][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:56.562][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:56.562][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:56.563][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:56.565][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:56.566][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:56.567][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:56.568][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:56.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:56.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:56.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:56.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:56.579][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:56.580][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:56.581][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:56.589][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:56.591][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:56.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:56.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:56.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:56.603][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:56.603][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:56.604][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:56.605][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:56.606][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:56.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:56.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:56.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:56.615][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:56.616][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:56.617][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:56.618][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:56.619][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:56.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:56.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:56.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:56.628][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:56.629][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:56.630][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:56.631][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:56.632][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:56.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:56.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:56.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:56.641][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:56.642][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:56.643][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:56.644][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:56.645][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:56.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:56.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:56.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:56.654][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:56.655][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:56.656][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:56.656][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:56.657][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:56.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:56.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:56.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:56.667][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:56.668][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:56.668][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:56.669][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:56.670][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:56.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:56.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:56.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:56.679][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:56.680][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:56.681][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:56.682][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:56.683][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:56.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:56.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:56.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:56.692][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:56.693][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:56.694][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:56.695][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:56.696][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:56.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:56.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:56.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:56.705][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:56.706][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:56.707][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:56.708][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:56.709][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:56.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:56.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:56.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:56.718][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:56.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:56.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:56.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:56.721][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:56.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:56.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:56.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:56.730][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:56.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:56.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:56.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:56.734][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:56.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:56.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:56.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:56.737][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:56.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:56.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:56.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:56.740][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:56.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:56.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:56.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:56.743][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:56.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:56.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:56.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:56.754][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:56.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:56.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:56.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:56.757][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:56.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:56.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:56.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:56.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:56.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:56.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:56.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:56.763][self$createEntryFromContent] Accession numbers: 636.
biodb.TRACE[2022-04-09 08:03:56.764][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:56.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:56.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:56.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:56.767][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:56.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:56.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:56.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:56.770][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:56.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:56.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:56.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:56.773][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:56.773][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:56.774][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:56.776][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:56.776][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:56.777][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:56.778][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:56.778][private$loadEntries] Creating entries from ids [1]: "3017".
biodb.DEBUG[2022-04-09 08:03:56.779][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:03:56.780][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3017".
biodb.TRACE[2022-04-09 08:03:56.781][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:03:56.782][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:03:56.783][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:03:56.784][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:03:56.785][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:03:56.785][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:03:56.788][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:56.788][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:56.789][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:56.790][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:56.791][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:56.792][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:56.792][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:56.793][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3017".
biodb.DEBUG[2022-04-09 08:03:56.795][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:03:56.796][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:03:56.797][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3017".
biodb.TRACE[2022-04-09 08:03:57.247][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3017).
biodb.DEBUG[2022-04-09 08:03:58.073][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:03:58.088][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a0d2dadbafdef2154bb32b0db7e287ac.content"
biodb.TRACE[2022-04-09 08:03:58.112][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a0d2dadbafdef2154bb32b0db7e287ac.request"
biodb.TRACE[2022-04-09 08:03:58.135][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3017.xml"
biodb.DEBUG[2022-04-09 08:03:58.143][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:03:58.171][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:03:58.172][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:03:58.174][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:58.175][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:58.175][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:58.177][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:58.178][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:58.178][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:58.179][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:58.181][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:58.182][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:58.183][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.183][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.184][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:58.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:58.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.195][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:58.196][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:58.197][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.198][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.199][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:58.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:58.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.209][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:58.210][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:58.210][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.211][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.212][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:58.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:58.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.222][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:58.223][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:58.224][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.225][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.226][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:58.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:58.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.235][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:58.236][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:58.237][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.237][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.238][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:58.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:58.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.248][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:58.249][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:58.250][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.250][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.252][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:58.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:58.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.261][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:58.262][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:58.263][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.264][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.265][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:58.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:58.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.275][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:58.276][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:58.276][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.277][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.278][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:58.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:58.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.288][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:58.289][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:58.290][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.290][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.292][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:58.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:58.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.301][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:58.304][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:58.306][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.315][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.317][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:58.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:58.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.327][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:58.328][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:58.328][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.329][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.330][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:58.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:58.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.338][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:58.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:58.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.341][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:58.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:58.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.343][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:58.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:58.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.346][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:58.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:58.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.348][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:58.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:58.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.351][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:58.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:58.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.353][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:58.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:58.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.361][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:58.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:58.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.364][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:58.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:58.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.366][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:58.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:58.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:58.369][self$createEntryFromContent] Accession numbers: 3017.
biodb.TRACE[2022-04-09 08:03:58.370][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:58.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:58.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.372][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:58.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:58.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.375][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:58.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:58.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:58.378][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:03:58.379][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:58.379][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:58.380][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:58.381][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:58.382][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:58.382][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:58.383][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:58.384][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:58.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:58.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.386][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:58.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:58.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.389][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:03:58.390][private$selectFields]
biodb.TRACE[2022-04-09 08:03:58.390][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:03:58.391][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:03:58.391][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:03:58.392][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:58.393][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:58.393][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.394][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.395][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:58.395][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:58.396][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.397][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.397][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:03:58.398][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:03:58.398][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:58.399][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:58.400][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.400][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.401][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:03:58.402][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:58.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:58.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.405][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:58.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:58.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.407][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:58.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:58.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.410][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2022-04-09 08:03:58.411][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:58.411][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:58.412][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:58.413][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:58.414][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:58.414][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:58.415][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:58.416][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:58.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:58.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.418][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:58.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:58.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.421][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:03:58.422][private$selectFields]
biodb.TRACE[2022-04-09 08:03:58.422][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:03:58.423][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:03:58.424][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:03:58.424][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:58.425][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:58.426][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.426][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.427][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:58.428][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:58.428][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.429][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.430][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:03:58.433][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:03:58.434][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:58.435][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:58.436][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.437][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.437][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:03:58.438][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:58.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:58.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.441][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:58.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:58.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.443][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:58.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:58.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.446][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2022-04-09 08:03:58.447][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:58.447][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:58.448][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:58.449][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:58.450][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:58.450][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:58.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:58.452][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:58.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:58.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.454][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:58.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:58.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.457][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:03:58.457][private$selectFields]
biodb.TRACE[2022-04-09 08:03:58.458][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:03:58.459][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:03:58.459][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:03:58.460][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:58.461][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:58.461][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.462][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.462][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:58.463][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:58.464][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.464][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.465][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:03:58.466][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:03:58.466][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:58.470][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:58.471][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.472][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.473][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:03:58.473][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:58.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:58.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.476][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:58.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:58.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.478][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:58.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:58.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.481][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3017].
biodb.DEBUG[2022-04-09 08:03:58.482][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:03:58.482][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-04-09 08:03:58.488][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:58.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:58.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.490][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:58.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:58.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.493][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:58.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:58.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.495][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:58.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:58.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.498][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:58.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:58.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.501][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:58.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:58.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.503][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:58.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:58.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.506][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:58.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:58.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.508][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:58.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:58.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.511][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:58.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:58.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.514][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:58.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:58.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.516][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:58.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:58.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:58.558][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:58.559][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:58.559][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:58.560][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:58.561][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:58.562][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:58.562][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:58.634][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:03:58.636][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:03:58.637][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:03:58.638][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-04-09 08:03:59.423][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-04-09 08:03:59.891][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:03:59.907][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c60f2116f91d4ce61370ae6298305b49.content"
biodb.TRACE[2022-04-09 08:03:59.946][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c60f2116f91d4ce61370ae6298305b49.request"
biodb.DEBUG[2022-04-09 08:03:59.954][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:03:59.956][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:03:59.957][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:03:59.958][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-04-09 08:04:00.406][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-04-09 08:04:00.908][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:04:00.921][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/921bb2fccd1f3497458cb7cf8fd2ffda.content"
biodb.TRACE[2022-04-09 08:04:00.939][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/921bb2fccd1f3497458cb7cf8fd2ffda.request"
biodb.DEBUG[2022-04-09 08:04:00.947][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:00.947][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:00.948][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:00.949][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:00.950][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:00.950][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:00.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:00.952][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:00.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:00.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:00.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:00.954][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:00.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:00.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:00.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:00.957][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:00.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:00.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:00.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:00.960][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:00.960][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:00.961][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:00.962][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:00.962][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:00.963][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:00.963][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:00.964][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:00.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:00.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:00.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:00.967][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:00.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:00.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:00.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:00.969][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:00.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:00.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:00.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:00.972][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:00.973][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:00.973][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:00.974][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:00.975][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:00.975][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:00.976][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:00.977][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:00.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:00.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:00.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:00.979][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:00.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:00.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:00.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:00.982][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:00.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:00.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:00.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:00.985][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:04:00.986][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:00.986][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:00.987][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:00.988][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:00.989][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:00.989][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:00.990][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:00.990][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:00.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:00.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:00.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:00.993][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:00.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:00.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:00.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:00.996][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:00.996][private$selectFields]
biodb.TRACE[2022-04-09 08:04:00.997][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:00.998][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:00.998][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:00.999][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:01.000][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:01.000][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:01.001][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:01.002][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:01.002][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:01.003][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:01.004][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:01.004][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:01.005][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:01.006][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:01.006][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:01.007][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:01.007][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:01.008][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:01.009][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:01.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:01.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:01.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:01.011][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:01.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:01.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:01.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:01.014][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:01.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:01.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:01.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:01.021][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2022-04-09 08:04:01.021][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:01.022][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:01.023][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:01.024][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:01.025][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:01.025][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:01.026][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:01.034][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:01.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:01.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:01.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:01.037][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:01.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:01.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:01.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:01.052][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:01.053][private$selectFields]
biodb.TRACE[2022-04-09 08:04:01.053][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:01.054][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:01.054][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:01.055][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:01.056][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:01.056][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:01.057][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:01.058][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:01.058][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:01.059][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:01.059][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:01.060][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:01.066][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:01.067][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:01.068][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:01.068][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:01.069][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:01.070][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:01.070][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:01.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:01.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:01.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:01.073][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:01.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:01.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:01.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:01.075][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:01.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:01.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:01.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:01.078][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-04-09 08:04:01.079][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:01.079][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:01.080][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:01.081][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:01.082][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:01.082][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:01.083][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:01.084][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:01.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:01.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:01.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:01.086][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:01.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:01.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:01.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:01.089][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:01.089][private$selectFields]
biodb.TRACE[2022-04-09 08:04:01.090][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:01.091][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:01.091][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:01.092][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:01.093][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:01.093][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:01.094][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:01.094][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:01.095][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:01.096][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:01.096][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:01.097][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:01.098][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:01.098][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:01.099][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:01.100][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:01.100][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:01.101][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:01.102][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:01.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:01.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:01.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:01.104][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:01.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:01.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:01.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:01.107][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:01.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:01.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:01.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:01.110][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2022-04-09 08:04:01.111][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:04:01.111][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:04:01.113][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:01.113][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:01.114][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:01.115][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:01.115][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:01.116][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:01.117][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:01.192][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:04:01.194][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:04:01.195][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:04:01.196][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-04-09 08:04:01.663][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-04-09 08:04:02.129][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:04:02.143][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/839357b56387b64c91d43055dd5c5193.content"
biodb.TRACE[2022-04-09 08:04:02.165][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/839357b56387b64c91d43055dd5c5193.request"
biodb.DEBUG[2022-04-09 08:04:02.174][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:02.175][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:02.175][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:02.177][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:02.178][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:02.178][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:02.179][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:02.180][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:02.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:02.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:02.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:02.183][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:02.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:02.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:02.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:02.194][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:02.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:02.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:02.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:02.198][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:02.199][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:02.199][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:02.201][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:02.201][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:02.202][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:02.203][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:02.204][private$loadEntries] Creating entries from ids [1]: "91601".
biodb.DEBUG[2022-04-09 08:04:02.207][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:04:02.210][cch$loadFileContent] Trying to load 1 files from cache: [1]: "91601".
biodb.TRACE[2022-04-09 08:04:02.213][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:04:02.215][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:04:02.218][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:04:02.220][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:04:02.221][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:04:02.221][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:04:02.223][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:02.224][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:02.224][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:02.226][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:02.226][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:02.227][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:02.228][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:02.228][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=91601".
biodb.DEBUG[2022-04-09 08:04:02.230][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:04:02.231][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:04:02.232][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=91601".
biodb.TRACE[2022-04-09 08:04:02.672][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=91601).
biodb.DEBUG[2022-04-09 08:04:03.141][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:04:03.153][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/aa7bc0b3048e5fb322307698a3f56fa6.content"
biodb.TRACE[2022-04-09 08:04:03.171][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/aa7bc0b3048e5fb322307698a3f56fa6.request"
biodb.TRACE[2022-04-09 08:04:03.188][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/91601.xml"
biodb.DEBUG[2022-04-09 08:04:03.194][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:04:03.209][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:04:03.210][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:04:03.211][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:03.212][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:03.213][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:03.214][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:03.214][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:03.215][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:03.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:03.217][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:03.218][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:03.219][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:03.219][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:03.220][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:03.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:03.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:03.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:03.229][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:03.229][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:03.230][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:03.231][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:03.231][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:03.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:03.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:03.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:03.244][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:03.245][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:03.245][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:03.246][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:03.247][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:03.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:03.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:03.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:03.255][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:03.256][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:03.257][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:03.257][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:03.258][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:03.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:03.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:03.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:03.266][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:03.267][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:03.267][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:03.268][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:03.269][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:03.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:03.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:03.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:03.277][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:03.277][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:03.278][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:03.278][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:03.279][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:03.280][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:03.281][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:03.281][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:03.282][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:03.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:03.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:03.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:03.290][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:03.291][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:03.291][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:03.292][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:03.293][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:03.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:03.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:03.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:03.300][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:03.301][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:03.302][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:03.302][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:03.303][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:03.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:03.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:03.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:03.311][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:03.312][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:03.312][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:03.313][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:03.314][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:03.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:03.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:03.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:03.322][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:03.323][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:03.323][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:03.324][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:03.325][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:03.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:03.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:03.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:03.333][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:03.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:03.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:03.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:03.336][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:03.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:03.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:03.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:03.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:03.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:03.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:03.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:03.341][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:03.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:03.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:03.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:03.344][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:03.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:03.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:03.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:03.346][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:03.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:03.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:03.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:03.353][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:03.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:03.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:03.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:03.362][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:03.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:03.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:03.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:03.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:03.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:03.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:03.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:03.367][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:03.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:03.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:03.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:03.370][self$createEntryFromContent] Accession numbers: 91601.
biodb.TRACE[2022-04-09 08:04:03.371][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:03.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:03.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:03.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:03.373][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:03.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:03.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:03.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:03.376][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:03.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:03.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:03.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:03.379][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:03.379][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:03.380][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:03.381][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:03.382][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:03.382][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:03.383][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:03.384][private$loadEntries] Creating entries from ids [1]: "95147".
biodb.DEBUG[2022-04-09 08:04:03.384][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:04:03.385][cch$loadFileContent] Trying to load 1 files from cache: [1]: "95147".
biodb.TRACE[2022-04-09 08:04:03.386][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:04:03.387][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:04:03.388][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:04:03.388][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:04:03.389][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:04:03.390][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:04:03.391][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:03.392][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:03.392][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:03.394][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:03.394][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:03.395][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:03.395][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:03.396][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=95147".
biodb.DEBUG[2022-04-09 08:04:03.398][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:04:03.399][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:04:03.399][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=95147".
biodb.TRACE[2022-04-09 08:04:03.855][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=95147).
biodb.DEBUG[2022-04-09 08:04:04.332][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:04:04.347][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5dbc153d74635342b8ea0e83790c39e.content"
biodb.TRACE[2022-04-09 08:04:04.369][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5dbc153d74635342b8ea0e83790c39e.request"
biodb.TRACE[2022-04-09 08:04:04.391][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/95147.xml"
biodb.DEBUG[2022-04-09 08:04:04.399][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:04:04.418][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:04:04.419][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:04:04.420][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:04.421][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:04.429][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:04.431][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:04.432][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:04.433][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:04.434][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:04.436][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:04.437][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:04.438][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:04.438][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:04.439][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:04.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:04.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:04.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:04.450][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:04.450][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:04.451][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:04.452][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:04.453][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:04.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:04.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:04.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:04.462][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:04.463][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:04.463][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:04.464][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:04.465][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:04.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:04.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:04.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:04.474][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:04.475][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:04.475][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:04.476][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:04.477][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:04.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:04.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:04.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:04.486][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:04.486][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:04.487][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:04.488][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:04.489][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:04.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:04.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:04.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:04.498][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:04.498][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:04.499][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:04.500][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:04.501][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:04.501][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:04.502][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:04.503][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:04.504][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:04.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:04.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:04.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:04.513][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:04.513][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:04.514][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:04.515][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:04.516][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:04.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:04.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:04.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:04.525][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:04.526][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:04.526][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:04.527][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:04.528][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:04.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:04.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:04.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:04.538][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:04.538][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:04.539][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:04.540][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:04.541][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:04.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:04.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:04.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:04.550][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:04.551][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:04.552][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:04.552][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:04.558][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:04.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:04.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:04.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:04.569][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:04.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:04.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:04.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:04.572][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:04.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:04.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:04.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:04.575][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:04.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:04.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:04.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:04.578][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:04.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:04.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:04.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:04.581][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:04.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:04.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:04.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:04.583][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:04.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:04.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:04.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:04.586][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:04.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:04.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:04.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:04.595][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:04.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:04.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:04.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:04.598][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:04.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:04.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:04.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:04.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:04.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:04.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:04.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:04.604][self$createEntryFromContent] Accession numbers: 95147.
biodb.TRACE[2022-04-09 08:04:04.605][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:04.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:04.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:04.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:04.608][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:04.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:04.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:04.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:04.610][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:04.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:04.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:04.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:04.613][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:04:04.615][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:04.615][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:04.616][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:04.618][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:04.618][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:04.619][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:04.620][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:04.620][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:04.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:04.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:04.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:04.623][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:04.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:04.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:04.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:04.626][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:04.627][private$selectFields]
biodb.TRACE[2022-04-09 08:04:04.628][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:04.628][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:04.629][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:04.630][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:04.630][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:04.631][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:04.632][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:04.633][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:04.633][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:04.634][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:04.635][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:04.635][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:04.636][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:04.637][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:04.638][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:04.638][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:04.639][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:04.640][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:04.640][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:04.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:04.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:04.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:04.643][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:04.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:04.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:04.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:04.646][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:04.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:04.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:04.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:04.649][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2022-04-09 08:04:04.650][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:04.651][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:04.652][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:04.653][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:04.654][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:04.656][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:04.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:04.660][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:04.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:04.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:04.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:04.664][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:04.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:04.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:04.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:04.668][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:04.669][private$selectFields]
biodb.TRACE[2022-04-09 08:04:04.670][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:04.671][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:04.672][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:04.673][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:04.673][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:04.674][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:04.675][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:04.675][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:04.676][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:04.677][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:04.677][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:04.678][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:04.679][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:04.679][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:04.680][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:04.681][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:04.682][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:04.682][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:04.683][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:04.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:04.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:04.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:04.686][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:04.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:04.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:04.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:04.693][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:04.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:04.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:04.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:04.697][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2022-04-09 08:04:04.698][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:04.699][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:04.699][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:04.701][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:04.701][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:04.702][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:04.703][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:04.703][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:04.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:04.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:04.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:04.706][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:04.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:04.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:04.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:04.708][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:04.709][private$selectFields]
biodb.TRACE[2022-04-09 08:04:04.710][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:04.710][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:04.711][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:04.712][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:04.712][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:04.713][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:04.713][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:04.714][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:04.715][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:04.715][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:04.716][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:04.717][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:04.717][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:04.718][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:04.719][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:04.719][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:04.720][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:04.720][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:04.721][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:04.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:04.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:04.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:04.724][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:04.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:04.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:04.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:04.726][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:04.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:04.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:04.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:04.729][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2022-04-09 08:04:04.729][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:04:04.730][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:04:04.731][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:04.732][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:04.733][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:04.734][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:04.734][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:04.735][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:04.735][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:04.815][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:04:04.817][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:04:04.818][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:04:04.819][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-04-09 08:04:05.262][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-04-09 08:04:05.733][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:04:05.752][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/432bde1fb4bc526aec38c781f579d7cb.content"
biodb.TRACE[2022-04-09 08:04:05.770][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/432bde1fb4bc526aec38c781f579d7cb.request"
biodb.DEBUG[2022-04-09 08:04:05.777][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:05.778][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:05.778][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:05.780][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:05.780][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:05.781][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:05.781][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:05.782][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:05.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:05.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:05.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:05.785][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:05.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:05.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:05.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:05.787][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:05.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:05.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:05.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:05.790][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:05.790][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:05.791][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:05.792][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:05.793][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:05.793][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:05.794][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:05.794][private$loadEntries] Creating entries from ids [1]: "64199".
biodb.DEBUG[2022-04-09 08:04:05.795][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:04:05.796][cch$loadFileContent] Trying to load 1 files from cache: [1]: "64199".
biodb.TRACE[2022-04-09 08:04:05.797][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:04:05.797][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:04:05.798][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:04:05.799][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:04:05.799][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:04:05.800][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:04:05.802][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:05.802][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:05.803][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:05.804][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:05.804][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:05.805][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:05.806][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:05.806][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64199".
biodb.DEBUG[2022-04-09 08:04:05.808][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:04:05.809][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:04:05.810][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64199".
biodb.TRACE[2022-04-09 08:04:06.255][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64199).
biodb.DEBUG[2022-04-09 08:04:06.724][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:04:06.739][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a31cc2b07404761abdda19d4ffeaa880.content"
biodb.TRACE[2022-04-09 08:04:06.761][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a31cc2b07404761abdda19d4ffeaa880.request"
biodb.TRACE[2022-04-09 08:04:06.783][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64199.xml"
biodb.DEBUG[2022-04-09 08:04:06.798][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:04:06.818][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:04:06.819][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:04:06.820][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:06.821][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:06.822][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:06.823][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:06.824][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:06.824][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:06.825][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:06.827][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:06.828][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:06.828][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:06.829][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:06.830][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:06.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:06.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:06.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:06.840][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:06.841][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:06.842][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:06.842][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:06.843][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:06.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:06.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:06.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:06.853][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:06.854][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:06.854][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:06.855][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:06.856][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:06.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:06.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:06.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:06.866][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:06.867][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:06.867][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:06.868][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:06.869][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:06.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:06.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:06.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:06.879][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:06.880][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:06.880][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:06.881][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:06.882][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:06.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:06.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:06.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:06.892][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:06.893][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:06.894][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:06.894][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:06.895][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:06.896][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:06.897][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:06.898][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:06.899][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:06.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:06.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:06.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:06.913][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:06.914][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:06.915][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:06.916][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:06.917][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:06.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:06.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:06.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:06.927][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:06.928][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:06.928][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:06.929][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:06.930][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:06.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:06.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:06.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:06.947][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:06.947][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:06.948][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:06.949][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:06.950][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:06.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:06.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:06.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:06.961][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:06.961][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:06.962][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:06.963][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:06.964][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:06.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:06.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:06.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:06.974][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:06.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:06.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:06.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:06.977][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:06.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:06.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:06.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:06.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:06.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:06.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:06.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:06.983][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:06.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:06.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:06.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:06.986][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:06.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:06.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:06.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:06.990][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:06.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:06.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:06.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:06.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:06.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:06.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:06.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:07.003][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:07.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:07.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:07.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:07.006][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:07.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:07.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:07.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:07.009][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:07.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:07.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:07.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:07.012][self$createEntryFromContent] Accession numbers: 64199.
biodb.TRACE[2022-04-09 08:04:07.013][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:07.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:07.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:07.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:07.016][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:07.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:07.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:07.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:07.019][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:07.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:07.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:07.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:07.022][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:07.023][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:07.024][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:07.026][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:07.026][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:07.027][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:07.028][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:07.029][private$loadEntries] Creating entries from ids [1]: "65648".
biodb.DEBUG[2022-04-09 08:04:07.030][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:04:07.031][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65648".
biodb.TRACE[2022-04-09 08:04:07.032][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:04:07.033][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:04:07.034][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:04:07.034][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:04:07.035][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:04:07.036][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:04:07.038][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:07.039][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:07.040][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:07.041][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:07.042][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:07.043][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:07.043][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:07.044][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65648".
biodb.DEBUG[2022-04-09 08:04:07.047][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:04:07.048][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:04:07.049][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65648".
biodb.TRACE[2022-04-09 08:04:07.498][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65648).
biodb.DEBUG[2022-04-09 08:04:07.960][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:04:07.975][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4176d017d73a3b7cdd77f889aa9b1b1d.content"
biodb.TRACE[2022-04-09 08:04:07.997][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4176d017d73a3b7cdd77f889aa9b1b1d.request"
biodb.TRACE[2022-04-09 08:04:08.027][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65648.xml"
biodb.DEBUG[2022-04-09 08:04:08.034][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:04:08.051][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:04:08.052][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:04:08.053][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:08.054][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:08.055][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:08.056][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:08.057][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:08.057][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:08.058][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:08.060][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:08.061][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:08.061][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.062][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.063][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:08.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:08.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.072][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:08.073][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:08.074][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.075][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.076][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:08.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:08.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.085][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:08.086][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:08.087][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.088][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.089][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:08.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:08.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.098][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:08.099][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:08.100][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.100][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.101][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:08.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:08.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.111][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:08.112][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:08.113][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.113][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.114][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:08.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:08.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.124][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:08.125][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:08.125][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.126][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.127][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:08.128][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.128][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.129][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.130][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:08.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.144][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:08.146][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:08.147][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.148][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.149][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:08.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:08.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.161][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:08.162][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:08.162][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.163][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.165][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:08.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:08.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.174][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:08.175][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:08.176][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.177][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.177][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:08.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:08.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.187][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:08.188][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:08.189][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.189][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.190][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:08.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:08.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.199][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.203][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.206][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:08.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:08.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.209][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.212][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:08.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:08.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.215][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:08.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:08.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.218][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:08.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:08.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.228][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:08.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:08.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.230][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:08.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:08.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.234][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:08.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:08.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:08.237][self$createEntryFromContent] Accession numbers: 65648.
biodb.TRACE[2022-04-09 08:04:08.237][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:08.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:08.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.240][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:08.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:08.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.244][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:08.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:08.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:08.247][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:04:08.248][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:08.249][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:08.250][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:08.251][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:08.252][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:08.252][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:08.253][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:08.254][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.257][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.260][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:08.261][private$selectFields]
biodb.TRACE[2022-04-09 08:04:08.262][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:08.262][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:08.263][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:08.264][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.265][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.265][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.266][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.267][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.268][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.268][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.269][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.270][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:08.270][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:08.271][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.272][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.273][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.273][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.274][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:08.275][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.283][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.287][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.290][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2022-04-09 08:04:08.291][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:08.292][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:08.292][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:08.294][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:08.294][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:08.295][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:08.296][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:08.297][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.299][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.302][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:08.303][private$selectFields]
biodb.TRACE[2022-04-09 08:04:08.303][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:08.304][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:08.305][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:08.306][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.306][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.307][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.308][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.308][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.309][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.310][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.310][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.311][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:08.312][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:08.313][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.313][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.314][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.315][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.315][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:08.316][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.319][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.322][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.325][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2022-04-09 08:04:08.325][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:08.326][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:08.327][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:08.328][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:08.329][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:08.329][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:08.330][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:08.331][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.334][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.336][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:08.337][private$selectFields]
biodb.TRACE[2022-04-09 08:04:08.338][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:08.338][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:08.339][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:08.340][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.341][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.341][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.342][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.343][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.343][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.344][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.345][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.345][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:08.346][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:08.347][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.348][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.348][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.349][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.350][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:08.350][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.353][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.356][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.359][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2022-04-09 08:04:08.360][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:04:08.361][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-04-09 08:04:08.376][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:04:08.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:04:08.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.379][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:04:08.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:04:08.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.382][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:04:08.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:04:08.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-04-09 08:04:08.385][biodb::testThat]
biodb.INFO [2022-04-09 08:04:08.386][biodb::testThat] Running test function test_annotateMzValues_ppm_tol (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2022-04-09 08:04:08.387][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:04:08.387][biodb::testThat]
biodb.TRACE[2022-04-09 08:04:08.390][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:04:08.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:04:08.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.392][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:04:08.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:04:08.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.395][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:04:08.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:04:08.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.398][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.400][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.403][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.406][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.409][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.411][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.419][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.422][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.425][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.428][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.430][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.433][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:08.437][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:08.438][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:08.438][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:08.440][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:08.440][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:08.441][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:08.441][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:08.514][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:04:08.516][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:04:08.517][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1e3885f0c8b7bc081513880959401862".
biodb.TRACE[2022-04-09 08:04:08.518][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:04:08.519][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1e3885f0c8b7bc081513880959401862.content".
biodb.DEBUG[2022-04-09 08:04:08.521][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:04:08.523][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:04:08.524][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4b7e19492b2d1086a5dba1710a3b39b".
biodb.TRACE[2022-04-09 08:04:08.524][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:04:08.525][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f4b7e19492b2d1086a5dba1710a3b39b.content".
biodb.DEBUG[2022-04-09 08:04:08.527][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:08.531][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:08.531][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:08.533][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:08.534][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:08.534][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:08.535][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:08.536][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.538][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.541][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:08.544][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:04:08.546][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:04:08.547][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d57f841033be8ab371045edb0388ed60".
biodb.TRACE[2022-04-09 08:04:08.548][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:04:08.548][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d57f841033be8ab371045edb0388ed60.content".
biodb.DEBUG[2022-04-09 08:04:08.550][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:04:08.551][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:08.551][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:08.552][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:08.553][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:08.554][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:08.554][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:08.555][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:08.556][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.558][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.561][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:08.561][private$selectFields]
biodb.TRACE[2022-04-09 08:04:08.562][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:08.563][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:08.563][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:08.564][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.565][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.565][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.566][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.566][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.567][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.568][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.568][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.569][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:08.570][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:08.570][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.571][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.572][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.572][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.573][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:08.573][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.576][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.579][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.581][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-04-09 08:04:08.582][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:04:08.583][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:04:08.584][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:08.584][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:08.585][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:08.586][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:08.586][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:08.587][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:08.588][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:08.662][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:04:08.664][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:04:08.665][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3f1d442725dcc6ae0abe5c87cfaad307".
biodb.TRACE[2022-04-09 08:04:08.665][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:04:08.666][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3f1d442725dcc6ae0abe5c87cfaad307.content".
biodb.DEBUG[2022-04-09 08:04:08.668][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:08.668][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:08.669][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:08.670][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:08.670][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:08.671][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:08.671][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:08.672][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.675][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.677][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:08.680][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:08.680][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:08.681][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:08.682][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:08.682][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:08.683][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:08.683][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:08.684][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.687][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.689][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:08.692][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:04:08.694][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:04:08.695][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ef9eda9e8faa68b5f4644b265e186796".
biodb.TRACE[2022-04-09 08:04:08.695][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:04:08.696][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef9eda9e8faa68b5f4644b265e186796.content".
biodb.DEBUG[2022-04-09 08:04:08.698][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:08.698][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:08.699][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:08.700][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:08.700][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:08.701][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:08.701][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:08.702][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.705][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.707][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:08.710][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:08.710][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:08.711][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:08.712][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:08.713][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:08.713][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:08.714][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:08.714][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.717][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.720][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:08.722][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:08.723][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:08.723][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:08.724][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:08.725][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:08.726][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:08.726][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:08.727][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.729][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.732][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:08.735][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:04:08.736][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:08.736][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:08.737][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:08.738][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:08.738][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:08.739][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:08.740][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:08.740][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.743][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.745][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:08.746][private$selectFields]
biodb.TRACE[2022-04-09 08:04:08.747][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:08.750][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:08.751][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:08.752][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.752][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.753][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.754][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.754][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.755][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.756][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.756][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.757][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:08.757][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:08.758][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.759][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.759][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.760][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.761][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:08.761][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.764][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.766][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.769][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2022-04-09 08:04:08.770][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:08.770][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:08.771][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:08.772][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:08.772][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:08.773][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:08.773][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:08.774][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.777][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.779][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:08.780][private$selectFields]
biodb.TRACE[2022-04-09 08:04:08.780][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:08.781][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:08.782][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:08.782][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.783][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.783][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.784][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.785][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.785][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.786][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.787][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.787][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:08.788][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:08.788][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.789][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.790][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.790][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.791][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:08.791][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.794][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.796][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.799][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2022-04-09 08:04:08.800][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:08.800][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:08.801][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:08.802][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:08.802][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:08.803][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:08.804][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:08.804][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.807][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.809][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:08.810][private$selectFields]
biodb.TRACE[2022-04-09 08:04:08.810][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:08.811][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:08.812][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:08.812][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.813][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.814][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.814][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.815][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.815][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.816][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.817][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.817][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:08.818][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:08.819][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.819][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.820][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.820][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.821][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:08.822][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.824][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.827][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.830][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2022-04-09 08:04:08.830][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:04:08.831][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:04:08.832][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:08.833][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:08.833][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:08.834][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:08.835][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:08.835][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:08.836][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:08.908][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:04:08.910][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:04:08.911][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1f74ce81a905644d346321032fe47e5f".
biodb.TRACE[2022-04-09 08:04:08.912][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:04:08.912][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1f74ce81a905644d346321032fe47e5f.content".
biodb.DEBUG[2022-04-09 08:04:08.914][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:08.914][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:08.915][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:08.916][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:08.917][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:08.917][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:08.918][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:08.918][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.921][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.924][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:08.926][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:08.927][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:08.927][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:08.928][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:08.929][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:08.930][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:08.930][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:08.931][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.934][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.936][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:08.939][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:04:08.941][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:04:08.942][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d7672f179ff5d0339b4462dafc99279b".
biodb.TRACE[2022-04-09 08:04:08.943][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:04:08.944][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d7672f179ff5d0339b4462dafc99279b.content".
biodb.DEBUG[2022-04-09 08:04:08.946][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:08.947][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:08.948][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:08.949][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:08.949][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:08.950][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:08.950][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:08.951][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.954][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.956][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:08.959][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:08.959][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:08.960][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:08.961][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:08.962][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:08.965][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:08.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:08.967][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.969][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.972][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:08.974][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:08.975][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:08.976][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:08.977][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:08.977][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:08.978][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:08.978][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:08.979][private$loadEntries] Creating entries from ids [1]: "3510".
biodb.DEBUG[2022-04-09 08:04:08.980][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:04:08.981][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3510".
biodb.TRACE[2022-04-09 08:04:08.981][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:04:08.982][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:04:08.983][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:04:08.983][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:04:08.984][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:04:08.985][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:04:08.986][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:08.987][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:08.987][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:08.988][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:08.989][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:08.989][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:08.990][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:08.991][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3510".
biodb.DEBUG[2022-04-09 08:04:08.992][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:04:08.993][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:04:08.994][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3510".
biodb.TRACE[2022-04-09 08:04:09.447][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3510).
biodb.DEBUG[2022-04-09 08:04:09.929][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:04:09.943][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/58362fa70b44eecb6a87afbf9b6dfd8b.content"
biodb.TRACE[2022-04-09 08:04:09.963][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/58362fa70b44eecb6a87afbf9b6dfd8b.request"
biodb.TRACE[2022-04-09 08:04:09.983][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3510.xml"
biodb.DEBUG[2022-04-09 08:04:09.990][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:04:10.007][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:04:10.008][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:04:10.009][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:10.010][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:10.011][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:10.012][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:10.013][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:10.013][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:10.014][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:10.016][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:10.017][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:10.017][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:10.018][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:10.019][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:10.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:10.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:10.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:10.028][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:10.029][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:10.034][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:10.035][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:10.036][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:10.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:10.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:10.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:10.045][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:10.046][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:10.047][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:10.047][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:10.048][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:10.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:10.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:10.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:10.057][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:10.058][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:10.058][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:10.059][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:10.060][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:10.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:10.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:10.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:10.069][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:10.070][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:10.070][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:10.071][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:10.072][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:10.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:10.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:10.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:10.081][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:10.081][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:10.082][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:10.083][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:10.084][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:10.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:10.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:10.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:10.093][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:10.094][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:10.094][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:10.095][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:10.096][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:10.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:10.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:10.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:10.104][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:10.105][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:10.106][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:10.107][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:10.108][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:10.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:10.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:10.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:10.117][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:10.117][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:10.118][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:10.119][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:10.120][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:10.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:10.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:10.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:10.129][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:10.130][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:10.131][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:10.131][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:10.132][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:10.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:10.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:10.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:10.142][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:10.142][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:10.143][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:10.144][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:10.145][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:10.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:10.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:10.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:10.159][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:10.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:10.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:10.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:10.162][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:10.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:10.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:10.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:10.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:10.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:10.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:10.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:10.169][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:10.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:10.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:10.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:10.172][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:10.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:10.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:10.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:10.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:10.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:10.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:10.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:10.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:10.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:10.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:10.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:10.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:10.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:10.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:10.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:10.189][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:10.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:10.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:10.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:10.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:10.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:10.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:10.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:10.195][self$createEntryFromContent] Accession numbers: 3510.
biodb.TRACE[2022-04-09 08:04:10.196][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:10.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:10.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:10.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:10.199][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:10.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:10.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:10.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:10.201][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:10.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:10.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:10.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:10.204][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:10.205][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:10.206][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:10.207][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:10.207][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:10.208][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:10.209][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:10.209][private$loadEntries] Creating entries from ids [1]: "7554".
biodb.DEBUG[2022-04-09 08:04:10.210][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:04:10.212][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7554".
biodb.TRACE[2022-04-09 08:04:10.212][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:04:10.213][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:04:10.214][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:04:10.215][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:04:10.215][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:04:10.216][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:04:10.219][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:10.219][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:10.220][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:10.221][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:10.222][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:10.223][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:10.223][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:10.224][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7554".
biodb.DEBUG[2022-04-09 08:04:10.226][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:04:10.227][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:04:10.228][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7554".
biodb.TRACE[2022-04-09 08:04:10.674][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7554).
biodb.DEBUG[2022-04-09 08:04:11.228][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:04:11.241][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66bd6c2472b2485e58ad424b4505cbea.content"
biodb.TRACE[2022-04-09 08:04:11.261][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66bd6c2472b2485e58ad424b4505cbea.request"
biodb.TRACE[2022-04-09 08:04:11.280][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7554.xml"
biodb.DEBUG[2022-04-09 08:04:11.287][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:04:11.310][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:04:11.311][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:04:11.313][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:11.313][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:11.314][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:11.315][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:11.316][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:11.316][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:11.317][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:11.319][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:11.319][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:11.320][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.321][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.322][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:11.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:11.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.330][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:11.331][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:11.331][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.332][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.333][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:11.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:11.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.341][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:11.342][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:11.343][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.343][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.344][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:11.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:11.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.352][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:11.353][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:11.354][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.355][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.355][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:11.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:11.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.364][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:11.364][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:11.365][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.366][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.367][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:11.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:11.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.375][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:11.376][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:11.377][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.377][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.378][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:11.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:11.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.387][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:11.388][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:11.389][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.389][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.390][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:11.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:11.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.399][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:11.400][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:11.400][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.401][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.402][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:11.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:11.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.415][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:11.416][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:11.417][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.417][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.418][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:11.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:11.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.427][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:11.428][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:11.429][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.429][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.430][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:11.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:11.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.438][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:11.439][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:11.440][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.440][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.441][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:11.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:11.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.450][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.452][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.455][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:11.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:11.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.458][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.461][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:11.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:11.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.463][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:11.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:11.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:11.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:11.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:11.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:11.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.477][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:11.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:11.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.480][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:11.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:11.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:11.483][self$createEntryFromContent] Accession numbers: 7554.
biodb.TRACE[2022-04-09 08:04:11.484][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:11.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:11.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.486][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:11.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:11.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.489][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:11.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:11.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:11.492][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:04:11.493][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:11.494][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:11.495][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:11.496][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:11.497][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:11.497][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:11.498][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:11.499][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.502][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.505][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:11.505][private$selectFields]
biodb.TRACE[2022-04-09 08:04:11.506][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:11.507][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:11.507][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:11.508][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.509][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.510][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.510][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.511][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.512][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.513][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.513][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.514][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:11.515][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:11.515][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.516][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.517][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.517][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.518][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:11.519][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.522][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.526][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.530][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2022-04-09 08:04:11.531][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:11.532][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:11.532][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:11.534][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:11.542][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:11.543][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:11.544][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:11.545][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.549][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.552][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:11.553][private$selectFields]
biodb.TRACE[2022-04-09 08:04:11.554][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:11.554][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:11.555][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:11.556][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.557][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.558][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.558][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.559][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.560][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.561][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.561][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.562][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:11.563][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:11.563][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.564][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.565][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.566][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.567][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:11.568][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.571][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.574][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.577][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3017].
biodb.DEBUG[2022-04-09 08:04:11.578][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:11.579][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:11.579][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:11.581][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:11.582][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:11.582][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:11.583][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:11.584][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.587][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.590][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:11.590][private$selectFields]
biodb.TRACE[2022-04-09 08:04:11.591][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:11.592][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:11.593][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:11.593][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.594][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.595][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.596][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.596][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.597][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.598][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.599][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.599][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:11.600][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:11.601][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.602][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.602][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.603][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.604][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:11.605][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.607][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.610][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.614][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7554].
biodb.DEBUG[2022-04-09 08:04:11.614][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:04:11.615][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-04-09 08:04:11.621][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:11.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:11.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.624][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:11.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:11.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.627][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:11.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:11.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.630][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:11.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:11.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.633][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:11.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:11.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.636][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:11.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:11.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.639][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:11.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:11.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.642][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:11.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:11.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.646][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:11.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:11.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.649][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:11.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:11.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.652][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:11.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:11.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.655][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:11.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:11.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:11.660][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:11.661][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:11.662][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:11.663][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:11.664][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:11.664][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:11.665][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:11.755][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:04:11.757][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:04:11.758][cch$loadFileContent] Trying to load 1 files from cache: [1]: "c60f2116f91d4ce61370ae6298305b49".
biodb.TRACE[2022-04-09 08:04:11.759][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:04:11.760][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c60f2116f91d4ce61370ae6298305b49.content".
biodb.DEBUG[2022-04-09 08:04:11.763][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:04:11.765][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:04:11.765][cch$loadFileContent] Trying to load 1 files from cache: [1]: "921bb2fccd1f3497458cb7cf8fd2ffda".
biodb.TRACE[2022-04-09 08:04:11.766][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:04:11.767][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/921bb2fccd1f3497458cb7cf8fd2ffda.content".
biodb.DEBUG[2022-04-09 08:04:11.769][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:11.770][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:11.770][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:11.772][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:11.773][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:11.773][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:11.774][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:11.775][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:11.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:11.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.778][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:11.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:11.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.781][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:11.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:11.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:11.784][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:11.785][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:11.785][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:11.787][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:11.787][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:11.788][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:11.789][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:11.790][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:11.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:11.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.793][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:11.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:11.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.795][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:11.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:11.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:11.798][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:11.799][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:11.800][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:11.801][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:11.802][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:11.802][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:11.803][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:11.804][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:11.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:11.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.812][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:11.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:11.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.816][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:11.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:11.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:11.819][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:04:11.821][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:11.821][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:11.822][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:11.823][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:11.824][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:11.825][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:11.825][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:11.826][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.829][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.832][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:11.833][private$selectFields]
biodb.TRACE[2022-04-09 08:04:11.833][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:11.834][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:11.835][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:11.835][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.836][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.837][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.838][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.838][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.839][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.840][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.840][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.841][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:11.842][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:11.843][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.843][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.844][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.845][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.845][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:11.846][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.849][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.852][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.855][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2022-04-09 08:04:11.856][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:11.857][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:11.857][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:11.859][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:11.859][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:11.860][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:11.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:11.862][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.865][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.868][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:11.869][private$selectFields]
biodb.TRACE[2022-04-09 08:04:11.869][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:11.870][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:11.871][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:11.871][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.872][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.873][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.874][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.874][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.875][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.876][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.877][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.877][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:11.878][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:11.879][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.880][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.880][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.881][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.882][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:11.883][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.886][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.889][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.892][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-04-09 08:04:11.893][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:11.893][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:11.894][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:11.895][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:11.896][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:11.897][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:11.897][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:11.898][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.901][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.904][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:11.905][private$selectFields]
biodb.TRACE[2022-04-09 08:04:11.906][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:11.906][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:11.907][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:11.908][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.909][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.910][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.911][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.911][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.912][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.913][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.914][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.914][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:11.915][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:11.916][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.917][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.918][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.918][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.919][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:11.920][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.923][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.931][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.934][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2022-04-09 08:04:11.935][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:04:11.936][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:04:11.937][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:11.938][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:11.939][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:11.940][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:11.941][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:11.942][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:11.942][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:12.034][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:04:12.037][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:04:12.038][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:04:12.039][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.3*&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-04-09 08:04:12.548][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.3*&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-04-09 08:04:13.009][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:04:13.022][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/90efcfe115f7c339aea3aa4183474f2a.content"
biodb.TRACE[2022-04-09 08:04:13.042][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/90efcfe115f7c339aea3aa4183474f2a.request"
biodb.DEBUG[2022-04-09 08:04:13.051][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:13.051][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:13.052][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:13.053][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:13.054][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:13.055][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:13.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:13.056][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:13.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:13.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:13.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:13.065][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:13.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:13.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:13.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:13.069][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:13.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:13.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:13.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:13.072][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:13.073][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:13.074][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:13.075][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:13.076][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:13.076][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:13.077][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:13.078][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:13.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:13.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:13.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:13.081][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:13.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:13.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:13.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:13.084][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:13.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:13.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:13.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:13.086][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:13.087][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:13.088][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:13.089][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:13.089][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:13.090][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:13.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:13.091][private$loadEntries] Creating entries from ids [1]: "27495".
biodb.DEBUG[2022-04-09 08:04:13.092][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:04:13.093][cch$loadFileContent] Trying to load 1 files from cache: [1]: "27495".
biodb.TRACE[2022-04-09 08:04:13.094][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:04:13.095][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:04:13.096][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:04:13.096][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:04:13.097][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:04:13.098][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:04:13.100][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:13.100][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:13.101][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:13.102][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:13.103][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:13.103][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:13.104][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:13.105][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=27495".
biodb.DEBUG[2022-04-09 08:04:13.106][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:04:13.107][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:04:13.108][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=27495".
biodb.TRACE[2022-04-09 08:04:13.568][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=27495).
biodb.DEBUG[2022-04-09 08:04:14.070][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:04:14.084][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/edda5d46cbbeda6cad9b4593b6925e01.content"
biodb.TRACE[2022-04-09 08:04:14.104][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/edda5d46cbbeda6cad9b4593b6925e01.request"
biodb.TRACE[2022-04-09 08:04:14.123][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/27495.xml"
biodb.DEBUG[2022-04-09 08:04:14.130][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:04:14.147][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:04:14.148][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:04:14.150][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:14.150][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:14.151][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:14.152][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:14.153][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:14.154][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:14.154][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:14.156][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:14.157][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:14.158][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.159][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.160][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:14.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:14.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.177][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:14.177][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:14.178][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.179][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.180][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:14.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:14.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.190][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:14.191][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:14.192][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.193][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.194][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:14.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:14.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.203][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:14.204][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:14.205][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.205][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.206][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:14.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:14.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.216][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:14.216][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:14.217][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.218][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.219][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:14.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:14.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.228][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:14.229][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:14.230][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.230][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.231][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:14.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:14.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.241][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:14.242][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:14.242][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.243][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.244][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:14.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:14.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.258][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:14.259][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:14.259][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.260][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.261][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:14.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:14.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.271][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:14.272][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:14.273][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.273][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.274][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:14.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:14.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.284][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:14.285][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:14.286][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.287][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.288][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:14.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:14.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.297][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:14.298][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:14.299][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.300][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.301][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:14.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:14.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.318][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:14.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:14.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.321][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:14.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:14.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.324][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:14.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:14.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.327][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:14.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:14.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:14.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:14.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:14.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:14.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:14.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:14.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.346][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:14.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:14.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.349][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:14.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:14.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.352][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:14.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:14.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:14.355][self$createEntryFromContent] Accession numbers: 27495.
biodb.TRACE[2022-04-09 08:04:14.356][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:14.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:14.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.359][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:14.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:14.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.362][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:14.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:14.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:14.365][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:04:14.366][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:14.367][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:14.368][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:14.369][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:14.370][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:14.370][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:14.371][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:14.372][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:14.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:14.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.375][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:14.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:14.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.378][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:14.379][private$selectFields]
biodb.TRACE[2022-04-09 08:04:14.379][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:14.380][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:14.381][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:14.382][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:14.382][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:14.383][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.384][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.385][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:14.385][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:14.386][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.387][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.387][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:14.388][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:14.389][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:14.390][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:14.390][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.391][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.392][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:14.393][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:14.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:14.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.396][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:14.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:14.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.399][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:14.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:14.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.402][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2022-04-09 08:04:14.403][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:14.404][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:14.405][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:14.406][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:14.407][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:14.407][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:14.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:14.409][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:14.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:14.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.412][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:14.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:14.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.415][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:14.416][private$selectFields]
biodb.TRACE[2022-04-09 08:04:14.417][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:14.418][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:14.418][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:14.419][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:14.420][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:14.421][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.421][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.422][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:14.423][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:14.424][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.424][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.425][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:14.426][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:14.427][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:14.427][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:14.428][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.429][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.430][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:14.430][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:14.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:14.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.434][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:14.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:14.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.437][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:14.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:14.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.444][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2022-04-09 08:04:14.445][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:14.446][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:14.447][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:14.449][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:14.450][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:14.450][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:14.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:14.452][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:14.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:14.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.455][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:14.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:14.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.458][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:14.458][private$selectFields]
biodb.TRACE[2022-04-09 08:04:14.459][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:14.460][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:14.460][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:14.461][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:14.462][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:14.462][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.463][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.464][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:14.465][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:14.465][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.466][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.467][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:14.467][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:14.468][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:14.469][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:14.469][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.470][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.471][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:14.471][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:14.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:14.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.474][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:14.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:14.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.477][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:14.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:14.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.480][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [27495].
biodb.DEBUG[2022-04-09 08:04:14.481][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:04:14.482][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:04:14.483][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:14.484][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:14.484][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:14.485][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:14.486][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:14.487][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:14.487][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:14.572][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:04:14.574][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:04:14.575][cch$loadFileContent] Trying to load 1 files from cache: [1]: "432bde1fb4bc526aec38c781f579d7cb".
biodb.TRACE[2022-04-09 08:04:14.576][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:04:14.577][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/432bde1fb4bc526aec38c781f579d7cb.content".
biodb.DEBUG[2022-04-09 08:04:14.578][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:14.579][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:14.580][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:14.581][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:14.582][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:14.582][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:14.583][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:14.584][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:14.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:14.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.586][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:14.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:14.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.589][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:14.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:14.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:14.592][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:14.593][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:14.593][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:14.595][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:14.595][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:14.596][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:14.596][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:14.597][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:14.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:14.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.600][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:14.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:14.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.603][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:14.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:14.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:14.606][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:14.606][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:14.607][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:14.608][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:14.609][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:14.609][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:14.610][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:14.611][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:14.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:14.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.613][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:14.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:14.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.616][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:14.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:14.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:14.619][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:14.620][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:14.620][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:14.621][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:14.622][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:14.623][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:14.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:14.624][private$loadEntries] Creating entries from ids [1]: "65675".
biodb.DEBUG[2022-04-09 08:04:14.625][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:04:14.626][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65675".
biodb.TRACE[2022-04-09 08:04:14.627][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:04:14.628][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:04:14.628][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:04:14.629][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:04:14.630][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:04:14.630][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:04:14.632][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:14.633][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:14.633][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:14.635][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:14.635][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:14.636][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:14.636][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:14.637][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65675".
biodb.DEBUG[2022-04-09 08:04:14.639][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:04:14.640][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:04:14.641][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65675".
biodb.TRACE[2022-04-09 08:04:15.078][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65675).
biodb.DEBUG[2022-04-09 08:04:15.542][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:04:15.555][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5e9eb5601826c5f1539c216fc81b6e57.content"
biodb.TRACE[2022-04-09 08:04:15.575][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5e9eb5601826c5f1539c216fc81b6e57.request"
biodb.TRACE[2022-04-09 08:04:15.595][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65675.xml"
biodb.DEBUG[2022-04-09 08:04:15.609][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:04:15.626][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:04:15.627][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:04:15.628][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:15.629][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:15.629][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:15.631][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:15.631][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:15.632][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:15.633][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:15.634][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:15.635][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:15.636][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:15.636][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:15.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:15.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:15.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:15.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:15.646][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:15.646][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:15.647][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:15.648][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:15.649][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:15.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:15.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:15.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:15.657][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:15.658][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:15.658][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:15.659][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:15.660][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:15.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:15.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:15.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:15.668][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:15.669][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:15.670][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:15.670][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:15.671][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:15.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:15.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:15.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:15.680][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:15.681][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:15.681][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:15.682][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:15.683][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:15.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:15.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:15.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:15.692][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:15.692][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:15.693][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:15.694][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:15.695][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:15.696][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:15.696][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:15.697][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:15.698][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:15.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:15.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:15.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:15.707][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:15.707][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:15.708][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:15.709][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:15.710][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:15.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:15.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:15.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:15.719][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:15.719][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:15.720][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:15.725][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:15.726][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:15.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:15.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:15.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:15.736][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:15.737][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:15.737][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:15.738][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:15.739][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:15.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:15.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:15.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:15.747][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:15.748][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:15.749][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:15.749][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:15.750][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:15.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:15.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:15.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:15.759][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:15.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:15.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:15.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:15.761][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:15.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:15.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:15.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:15.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:15.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:15.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:15.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:15.767][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:15.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:15.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:15.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:15.770][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:15.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:15.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:15.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:15.773][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:15.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:15.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:15.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:15.775][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:15.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:15.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:15.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:15.784][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:15.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:15.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:15.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:15.787][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:15.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:15.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:15.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:15.789][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:15.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:15.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:15.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:15.792][self$createEntryFromContent] Accession numbers: 65675.
biodb.TRACE[2022-04-09 08:04:15.793][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:15.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:15.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:15.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:15.796][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:15.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:15.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:15.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:15.798][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:15.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:15.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:15.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:15.801][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:15.802][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:15.803][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:15.804][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:15.805][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:15.805][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:15.806][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:15.807][private$loadEntries] Creating entries from ids [1]: "66318".
biodb.DEBUG[2022-04-09 08:04:15.807][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:04:15.809][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66318".
biodb.TRACE[2022-04-09 08:04:15.810][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:04:15.810][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:04:15.811][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:04:15.812][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:04:15.813][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:04:15.813][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:04:15.815][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:15.816][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:15.817][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:15.818][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:15.819][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:15.819][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:15.820][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:15.821][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66318".
biodb.DEBUG[2022-04-09 08:04:15.823][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:04:15.824][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:04:15.825][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66318".
biodb.TRACE[2022-04-09 08:04:16.274][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66318).
biodb.DEBUG[2022-04-09 08:04:16.736][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:04:16.751][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f7af403e0af2ad309d5e7b7572ad9eab.content"
biodb.TRACE[2022-04-09 08:04:16.782][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f7af403e0af2ad309d5e7b7572ad9eab.request"
biodb.TRACE[2022-04-09 08:04:16.806][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66318.xml"
biodb.DEBUG[2022-04-09 08:04:16.813][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:04:16.831][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:04:16.832][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:04:16.833][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:16.834][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:16.834][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:16.836][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:16.837][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:16.837][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:16.838][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:16.840][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:16.841][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:16.841][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:16.842][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:16.843][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:16.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:16.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:16.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:16.857][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:16.858][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:16.858][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:16.859][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:16.860][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:16.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:16.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:16.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:16.870][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:16.870][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:16.871][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:16.872][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:16.873][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:16.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:16.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:16.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:16.882][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:16.883][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:16.884][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:16.885][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:16.886][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:16.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:16.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:16.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:16.896][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:16.896][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:16.897][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:16.898][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:16.899][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:16.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:16.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:16.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:16.909][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:16.910][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:16.911][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:16.911][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:16.912][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:16.918][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:16.920][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:16.921][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:16.922][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:16.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:16.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:16.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:16.933][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:16.934][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:16.934][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:16.935][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:16.936][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:16.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:16.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:16.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:16.946][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:16.946][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:16.947][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:16.948][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:16.949][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:16.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:16.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:16.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:16.958][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:16.959][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:16.960][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:16.960][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:16.961][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:16.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:16.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:16.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:16.970][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:16.971][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:16.972][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:16.973][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:16.974][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:16.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:16.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:16.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:16.982][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:16.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:16.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:16.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:16.986][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:16.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:16.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:16.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:16.989][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:16.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:16.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:16.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:16.992][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:16.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:16.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:16.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:16.995][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:16.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:16.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:16.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:16.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:16.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:16.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:17.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:17.001][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:17.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:17.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:17.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:17.010][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:17.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:17.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:17.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:17.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:17.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:17.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:17.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:17.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:17.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:17.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:17.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:17.019][self$createEntryFromContent] Accession numbers: 66318.
biodb.TRACE[2022-04-09 08:04:17.020][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:17.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:17.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:17.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:17.023][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:17.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:17.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:17.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:17.026][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:17.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:17.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:17.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:17.029][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:17.029][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:17.030][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:17.031][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:17.032][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:17.033][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:17.033][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:17.034][private$loadEntries] Creating entries from ids [1]: "67547".
biodb.DEBUG[2022-04-09 08:04:17.035][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:04:17.036][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67547".
biodb.TRACE[2022-04-09 08:04:17.037][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:04:17.038][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:04:17.039][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:04:17.040][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:04:17.040][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:04:17.041][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:04:17.043][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:17.044][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:17.044][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:17.050][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:17.051][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:17.052][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:17.053][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:17.054][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67547".
biodb.DEBUG[2022-04-09 08:04:17.056][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:04:17.057][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:04:17.058][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67547".
biodb.TRACE[2022-04-09 08:04:17.493][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67547).
biodb.DEBUG[2022-04-09 08:04:18.048][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:04:18.072][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5dcb6d289b29a3e5a91ef3f664ac8354.content"
biodb.TRACE[2022-04-09 08:04:18.092][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5dcb6d289b29a3e5a91ef3f664ac8354.request"
biodb.TRACE[2022-04-09 08:04:18.111][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67547.xml"
biodb.DEBUG[2022-04-09 08:04:18.117][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:04:18.134][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:04:18.135][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:04:18.136][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:18.136][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:18.137][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:18.138][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:18.139][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:18.140][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:18.141][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:18.142][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:18.143][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:18.144][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:18.145][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:18.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:18.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:18.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:18.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:18.155][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:18.156][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:18.156][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:18.157][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:18.158][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:18.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:18.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:18.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:18.167][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:18.168][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:18.169][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:18.170][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:18.171][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:18.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:18.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:18.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:18.185][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:18.186][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:18.187][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:18.188][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:18.189][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:18.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:18.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:18.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:18.199][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:18.200][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:18.201][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:18.201][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:18.202][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:18.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:18.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:18.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:18.211][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:18.212][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:18.212][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:18.213][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:18.214][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:18.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:18.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:18.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:18.223][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:18.223][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:18.224][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:18.225][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:18.226][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:18.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:18.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:18.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:18.234][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:18.235][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:18.236][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:18.236][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:18.237][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:18.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:18.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:18.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:18.245][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:18.246][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:18.247][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:18.247][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:18.248][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:18.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:18.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:18.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:18.257][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:18.258][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:18.258][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:18.259][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:18.260][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:18.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:18.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:18.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:18.269][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:18.270][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:18.270][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:18.271][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:18.272][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:18.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:18.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:18.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:18.281][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:18.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:18.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:18.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:18.284][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:18.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:18.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:18.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:18.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:18.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:18.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:18.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:18.290][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:18.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:18.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:18.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:18.293][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:18.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:18.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:18.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:18.296][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:18.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:18.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:18.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:18.299][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:18.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:18.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:18.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:18.315][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:18.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:18.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:18.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:18.318][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:18.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:18.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:18.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:18.321][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:18.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:18.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:18.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:18.324][self$createEntryFromContent] Accession numbers: 67547.
biodb.TRACE[2022-04-09 08:04:18.325][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:18.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:18.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:18.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:18.328][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:18.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:18.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:18.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:18.331][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:18.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:18.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:18.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:18.334][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:18.334][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:18.335][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:18.336][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:18.337][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:18.338][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:18.338][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:18.339][private$loadEntries] Creating entries from ids [1]: "69550".
biodb.DEBUG[2022-04-09 08:04:18.340][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:04:18.341][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69550".
biodb.TRACE[2022-04-09 08:04:18.342][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:04:18.343][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:04:18.344][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:04:18.344][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:04:18.345][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:04:18.346][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:04:18.348][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:18.348][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:18.349][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:18.350][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:18.351][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:18.352][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:18.352][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:18.353][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69550".
biodb.DEBUG[2022-04-09 08:04:18.355][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:04:18.356][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:04:18.357][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69550".
biodb.TRACE[2022-04-09 08:04:18.790][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69550).
biodb.DEBUG[2022-04-09 08:04:19.453][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:04:19.466][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/05703421c7bf99b1d8473c1de6165168.content"
biodb.TRACE[2022-04-09 08:04:19.486][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/05703421c7bf99b1d8473c1de6165168.request"
biodb.TRACE[2022-04-09 08:04:19.506][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/69550.xml"
biodb.DEBUG[2022-04-09 08:04:19.513][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:04:19.530][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:04:19.531][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:04:19.532][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:19.533][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:19.533][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:19.535][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:19.535][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:19.536][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:19.537][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:19.538][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:19.539][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:19.540][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:19.541][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:19.542][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:19.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:19.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:19.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:19.554][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:19.555][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:19.556][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:19.556][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:19.557][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:19.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:19.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:19.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:19.566][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:19.566][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:19.567][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:19.568][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:19.568][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:19.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:19.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:19.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:19.577][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:19.577][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:19.578][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:19.579][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:19.580][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:19.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:19.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:19.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:19.588][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:19.589][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:19.589][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:19.590][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:19.591][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:19.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:19.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:19.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:19.599][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:19.600][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:19.600][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:19.601][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:19.602][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:19.603][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:19.603][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:19.604][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:19.605][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:19.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:19.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:19.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:19.614][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:19.614][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:19.615][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:19.616][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:19.617][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:19.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:19.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:19.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:19.626][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:19.626][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:19.627][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:19.628][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:19.629][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:19.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:19.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:19.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:19.638][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:19.638][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:19.639][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:19.640][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:19.641][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:19.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:19.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:19.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:19.650][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:19.651][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:19.651][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:19.652][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:19.653][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:19.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:19.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:19.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:19.662][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:19.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:19.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:19.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:19.669][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:19.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:19.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:19.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:19.672][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:19.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:19.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:19.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:19.674][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:19.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:19.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:19.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:19.677][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:19.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:19.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:19.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:19.680][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:19.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:19.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:19.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:19.683][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:19.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:19.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:19.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:19.692][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:19.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:19.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:19.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:19.695][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:19.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:19.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:19.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:19.698][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:19.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:19.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:19.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:19.701][self$createEntryFromContent] Accession numbers: 69550.
biodb.TRACE[2022-04-09 08:04:19.701][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:19.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:19.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:19.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:19.704][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:19.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:19.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:19.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:19.707][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:19.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:19.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:19.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:19.710][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:19.711][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:19.711][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:19.713][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:19.713][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:19.714][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:19.714][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:19.715][private$loadEntries] Creating entries from ids [1]: "71520".
biodb.DEBUG[2022-04-09 08:04:19.716][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:04:19.717][cch$loadFileContent] Trying to load 1 files from cache: [1]: "71520".
biodb.TRACE[2022-04-09 08:04:19.718][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:04:19.719][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:04:19.720][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:04:19.720][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:04:19.721][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:04:19.722][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:04:19.724][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:19.724][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:19.725][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:19.726][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:19.727][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:19.728][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:19.728][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:19.729][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71520".
biodb.DEBUG[2022-04-09 08:04:19.731][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:04:19.732][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:04:19.733][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71520".
biodb.TRACE[2022-04-09 08:04:20.351][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71520).
biodb.DEBUG[2022-04-09 08:04:20.865][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:04:20.878][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e7ceab0ba86590faa4ea87df2e390610.content"
biodb.TRACE[2022-04-09 08:04:20.898][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e7ceab0ba86590faa4ea87df2e390610.request"
biodb.TRACE[2022-04-09 08:04:20.918][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/71520.xml"
biodb.DEBUG[2022-04-09 08:04:20.925][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:04:20.949][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:04:20.950][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:04:20.951][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:20.952][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:20.952][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:20.954][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:20.954][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:20.955][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:20.956][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:20.957][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:20.958][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:20.959][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:20.959][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:20.960][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:20.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:20.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:20.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:20.969][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:20.970][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:20.971][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:20.971][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:20.972][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:20.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:20.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:20.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:20.981][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:20.982][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:20.983][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:20.983][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:20.984][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:20.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:20.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:20.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:20.993][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:20.994][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:20.994][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:20.995][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:20.996][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:20.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:20.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:20.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:21.004][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:21.005][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:21.006][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:21.007][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:21.007][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:21.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:21.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:21.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:21.016][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:21.017][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:21.018][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:21.018][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:21.019][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:21.020][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:21.021][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:21.021][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:21.022][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:21.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:21.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:21.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:21.031][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:21.032][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:21.033][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:21.033][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:21.034][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:21.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:21.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:21.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:21.043][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:21.044][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:21.045][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:21.045][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:21.047][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:21.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:21.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:21.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:21.056][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:21.056][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:21.057][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:21.058][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:21.059][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:21.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:21.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:21.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:21.072][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:21.073][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:21.073][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:21.074][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:21.075][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:21.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:21.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:21.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:21.083][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:21.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:21.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:21.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:21.086][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:21.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:21.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:21.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:21.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:21.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:21.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:21.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:21.092][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:21.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:21.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:21.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:21.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:21.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:21.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:21.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:21.097][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:21.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:21.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:21.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:21.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:21.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:21.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:21.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:21.108][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:21.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:21.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:21.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:21.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:21.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:21.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:21.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:21.114][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:21.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:21.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:21.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:21.117][self$createEntryFromContent] Accession numbers: 71520.
biodb.TRACE[2022-04-09 08:04:21.118][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:21.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:21.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:21.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:21.120][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:21.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:21.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:21.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:21.123][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:21.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:21.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:21.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:21.126][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:21.127][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:21.127][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:21.129][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:21.129][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:21.130][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:21.131][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:21.132][private$loadEntries] Creating entries from ids [1]: "77600".
biodb.DEBUG[2022-04-09 08:04:21.132][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:04:21.133][cch$loadFileContent] Trying to load 1 files from cache: [1]: "77600".
biodb.TRACE[2022-04-09 08:04:21.134][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:04:21.135][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:04:21.136][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:04:21.137][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:04:21.137][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:04:21.138][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:04:21.140][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:21.141][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:21.141][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:21.143][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:21.143][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:21.144][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:21.145][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:21.146][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77600".
biodb.DEBUG[2022-04-09 08:04:21.148][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:04:21.149][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:04:21.150][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77600".
biodb.TRACE[2022-04-09 08:04:21.586][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77600).
biodb.DEBUG[2022-04-09 08:04:22.710][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:04:22.724][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/91aa415bb91d90afd912e94b5d252faa.content"
biodb.TRACE[2022-04-09 08:04:22.745][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/91aa415bb91d90afd912e94b5d252faa.request"
biodb.TRACE[2022-04-09 08:04:22.766][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77600.xml"
biodb.DEBUG[2022-04-09 08:04:22.779][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:04:22.796][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:04:22.797][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:04:22.798][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:22.799][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:22.799][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:22.801][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:22.801][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:22.802][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:22.803][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:22.804][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:22.805][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:22.806][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:22.806][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:22.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:22.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:22.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:22.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:22.816][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:22.817][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:22.818][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:22.819][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:22.820][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:22.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:22.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:22.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:22.828][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:22.829][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:22.830][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:22.830][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:22.831][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:22.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:22.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:22.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:22.840][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:22.841][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:22.841][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:22.842][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:22.843][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:22.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:22.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:22.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:22.852][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:22.852][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:22.853][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:22.854][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:22.855][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:22.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:22.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:22.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:22.863][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:22.864][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:22.865][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:22.866][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:22.867][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:22.867][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:22.868][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:22.869][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:22.870][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:22.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:22.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:22.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:22.879][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:22.880][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:22.880][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:22.881][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:22.882][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:22.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:22.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:22.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:22.891][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:22.892][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:22.893][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:22.893][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:22.894][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:22.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:22.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:22.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:22.907][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:22.908][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:22.908][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:22.909][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:22.910][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:22.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:22.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:22.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:22.919][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:22.919][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:22.920][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:22.921][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:22.922][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:22.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:22.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:22.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:22.930][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:22.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:22.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:22.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:22.933][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:22.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:22.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:22.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:22.936][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:22.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:22.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:22.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:22.939][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:22.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:22.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:22.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:22.942][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:22.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:22.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:22.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:22.945][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:22.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:22.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:22.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:22.947][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:22.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:22.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:22.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:22.956][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:22.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:22.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:22.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:22.959][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:22.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:22.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:22.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:22.962][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:22.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:22.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:22.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:22.964][self$createEntryFromContent] Accession numbers: 77600.
biodb.TRACE[2022-04-09 08:04:22.965][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:22.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:22.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:22.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:22.968][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:22.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:22.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:22.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:22.971][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:22.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:22.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:22.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:22.974][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:22.975][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:22.975][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:22.977][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:22.977][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:22.978][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:22.978][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:22.979][private$loadEntries] Creating entries from ids [1]: "77601".
biodb.DEBUG[2022-04-09 08:04:22.980][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:04:22.981][cch$loadFileContent] Trying to load 1 files from cache: [1]: "77601".
biodb.TRACE[2022-04-09 08:04:22.982][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:04:22.983][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:04:22.984][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:04:22.984][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:04:22.985][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:04:22.986][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:04:22.988][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:22.988][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:22.989][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:22.990][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:22.991][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:22.992][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:22.992][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:22.993][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77601".
biodb.DEBUG[2022-04-09 08:04:22.995][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:04:22.996][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:04:22.997][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77601".
biodb.TRACE[2022-04-09 08:04:23.433][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77601).
biodb.DEBUG[2022-04-09 08:04:23.899][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:04:23.915][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ff0e48db0e5117b4127b12d15d1485a8.content"
biodb.TRACE[2022-04-09 08:04:23.938][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ff0e48db0e5117b4127b12d15d1485a8.request"
biodb.TRACE[2022-04-09 08:04:23.967][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77601.xml"
biodb.DEBUG[2022-04-09 08:04:23.974][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:04:23.992][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:04:23.994][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:04:23.995][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:23.996][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:23.997][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:23.999][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:23.999][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:24.000][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:24.001][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:24.003][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:24.004][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:24.005][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.005][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.006][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:24.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:24.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.016][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:24.017][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:24.018][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.019][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.020][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:24.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:24.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.029][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:24.030][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:24.031][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.032][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.033][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:24.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:24.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.042][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:24.043][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:24.044][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.045][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.046][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:24.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:24.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.055][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:24.056][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:24.057][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.058][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.059][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:24.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:24.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.068][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:24.069][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:24.069][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.070][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.071][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:24.072][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.073][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.073][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.074][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:24.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.088][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:24.089][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:24.090][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.090][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.091][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:24.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:24.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.100][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:24.101][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:24.101][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.102][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.103][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:24.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:24.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.112][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:24.113][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:24.113][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.114][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.115][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:24.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:24.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.124][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:24.124][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:24.125][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.126][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.126][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:24.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:24.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.135][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.138][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.141][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:24.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:24.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.144][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.147][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:24.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:24.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.150][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:24.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:24.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:24.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:24.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.161][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:24.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:24.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.164][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:24.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:24.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:24.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:24.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:24.170][self$createEntryFromContent] Accession numbers: 77601.
biodb.TRACE[2022-04-09 08:04:24.171][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:24.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:24.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.174][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:24.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:24.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.177][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:24.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:24.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:24.180][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:04:24.182][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:24.182][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:24.183][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:24.184][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:24.185][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:24.186][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:24.186][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:24.187][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.190][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.193][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:24.194][private$selectFields]
biodb.TRACE[2022-04-09 08:04:24.195][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:24.196][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:24.196][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:24.197][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.198][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.198][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.199][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.200][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.201][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.201][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.202][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.203][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:24.204][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:24.205][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.205][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.206][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.207][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.207][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:24.208][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.216][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.218][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.222][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2022-04-09 08:04:24.222][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:24.223][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:24.224][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:24.225][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:24.226][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:24.226][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:24.227][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:24.228][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.231][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.234][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:24.234][private$selectFields]
biodb.TRACE[2022-04-09 08:04:24.235][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:24.236][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:24.236][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:24.237][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.238][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.238][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.239][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.240][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.241][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.241][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.242][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.243][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:24.244][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:24.244][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.245][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.246][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.246][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.247][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:24.248][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.251][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.254][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.257][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [77600].
biodb.DEBUG[2022-04-09 08:04:24.257][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:24.258][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:24.259][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:24.260][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:24.261][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:24.261][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:24.262][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:24.263][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.266][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.269][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:24.269][private$selectFields]
biodb.TRACE[2022-04-09 08:04:24.270][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:24.271][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:24.271][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:24.272][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.273][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.274][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.274][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.275][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.276][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.276][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.277][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.278][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:24.279][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:24.279][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.280][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.281][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.281][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.282][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:24.283][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.286][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.289][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.292][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [77601].
biodb.DEBUG[2022-04-09 08:04:24.293][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:04:24.293][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-04-09 08:04:24.300][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:04:24.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:04:24.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.303][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:04:24.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:04:24.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.306][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:04:24.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:04:24.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-04-09 08:04:24.310][biodb::testThat]
biodb.INFO [2022-04-09 08:04:24.310][biodb::testThat] Running test function test_annotateMzValues_input_dataframe_untouched (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2022-04-09 08:04:24.311][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:04:24.312][biodb::testThat]
biodb.TRACE[2022-04-09 08:04:24.315][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:04:24.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:04:24.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.318][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:04:24.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:04:24.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.321][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:04:24.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:04:24.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.324][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.327][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.330][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.333][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.336][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.339][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.347][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.350][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.353][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.355][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.358][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.361][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:24.367][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:24.368][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:24.368][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:24.370][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:24.370][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:24.371][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:24.372][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:24.454][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:04:24.457][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:04:24.458][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1e3885f0c8b7bc081513880959401862".
biodb.TRACE[2022-04-09 08:04:24.459][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:04:24.460][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1e3885f0c8b7bc081513880959401862.content".
biodb.DEBUG[2022-04-09 08:04:24.462][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:04:24.464][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:04:24.465][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4b7e19492b2d1086a5dba1710a3b39b".
biodb.TRACE[2022-04-09 08:04:24.466][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:04:24.467][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f4b7e19492b2d1086a5dba1710a3b39b.content".
biodb.DEBUG[2022-04-09 08:04:24.473][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:24.474][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:24.475][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:24.476][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:24.477][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:24.477][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:24.478][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:24.479][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.482][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.485][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:24.488][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:04:24.490][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:04:24.491][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d57f841033be8ab371045edb0388ed60".
biodb.TRACE[2022-04-09 08:04:24.492][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:04:24.493][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d57f841033be8ab371045edb0388ed60.content".
biodb.DEBUG[2022-04-09 08:04:24.495][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:04:24.496][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:24.496][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:24.497][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:24.498][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:24.499][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:24.500][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:24.500][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:24.501][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.504][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.507][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:24.508][private$selectFields]
biodb.TRACE[2022-04-09 08:04:24.508][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:24.509][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:24.510][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:24.511][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.511][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.512][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.513][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.513][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.514][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.515][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.516][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.516][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:24.517][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:24.518][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.519][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.519][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.520][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.521][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:24.521][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.524][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.527][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.530][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-04-09 08:04:24.531][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:04:24.532][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:04:24.533][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:24.534][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:24.535][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:24.536][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:24.537][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:24.537][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:24.538][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:24.625][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:04:24.627][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:04:24.628][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3f1d442725dcc6ae0abe5c87cfaad307".
biodb.TRACE[2022-04-09 08:04:24.629][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:04:24.630][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3f1d442725dcc6ae0abe5c87cfaad307.content".
biodb.DEBUG[2022-04-09 08:04:24.632][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:24.633][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:24.633][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:24.635][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:24.635][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:24.636][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:24.637][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:24.637][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.640][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.643][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:24.646][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:24.647][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:24.647][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:24.649][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:24.649][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:24.650][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:24.651][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:24.651][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.654][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.657][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:24.661][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:04:24.663][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:04:24.664][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ef9eda9e8faa68b5f4644b265e186796".
biodb.TRACE[2022-04-09 08:04:24.664][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:04:24.665][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef9eda9e8faa68b5f4644b265e186796.content".
biodb.DEBUG[2022-04-09 08:04:24.667][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:24.668][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:24.669][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:24.670][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:24.671][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:24.671][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:24.672][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:24.673][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.676][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.678][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:24.681][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:24.682][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:24.683][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:24.684][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:24.685][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:24.685][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:24.686][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:24.687][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.690][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.693][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:24.696][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:24.696][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:24.697][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:24.698][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:24.699][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:24.700][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:24.701][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:24.701][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.704][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.708][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:24.711][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:04:24.712][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:24.713][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:24.713][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:24.714][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:24.715][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:24.716][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:24.717][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:24.717][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.720][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.723][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:24.724][private$selectFields]
biodb.TRACE[2022-04-09 08:04:24.729][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:24.730][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:24.731][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:24.731][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.732][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.733][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.734][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.734][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.735][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.736][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.736][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.737][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:24.738][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:24.739][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.739][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.740][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.741][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.741][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:24.742][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.745][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.748][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.751][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2022-04-09 08:04:24.752][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:24.752][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:24.753][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:24.754][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:24.755][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:24.756][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:24.756][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:24.757][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.760][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.763][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:24.764][private$selectFields]
biodb.TRACE[2022-04-09 08:04:24.764][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:24.765][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:24.766][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:24.766][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.767][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.768][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.769][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.769][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.770][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.771][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.771][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.772][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:24.773][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:24.774][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.774][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.775][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.776][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.776][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:24.777][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.780][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.783][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.786][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2022-04-09 08:04:24.787][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:24.787][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:24.788][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:24.789][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:24.790][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:24.791][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:24.791][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:24.792][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.795][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.798][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:24.799][private$selectFields]
biodb.TRACE[2022-04-09 08:04:24.799][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:24.800][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:24.801][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:24.802][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.802][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.803][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.804][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.804][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.805][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.806][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.807][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.807][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:24.808][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:24.809][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.810][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.810][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.811][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.812][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:24.812][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.815][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.818][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.822][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2022-04-09 08:04:24.822][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:04:24.823][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:04:24.825][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:24.826][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:24.826][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:24.828][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:24.828][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:24.829][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:24.830][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:24.917][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:04:24.920][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:04:24.921][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f077e512e38828ca0970d6a9a2df40b1".
biodb.TRACE[2022-04-09 08:04:24.922][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:04:24.923][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f077e512e38828ca0970d6a9a2df40b1.content".
biodb.DEBUG[2022-04-09 08:04:24.925][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:24.925][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:24.926][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:24.927][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:24.928][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:24.929][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:24.929][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:24.930][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.933][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.936][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:24.939][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:24.940][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:24.941][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:24.942][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:24.943][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:24.943][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:24.944][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:24.945][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.948][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.951][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:24.954][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:24.955][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:24.955][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:24.957][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:24.957][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:24.958][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:24.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:24.960][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.963][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.966][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:24.969][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:24.970][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:24.970][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:24.972][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:24.972][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:24.973][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:24.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:24.974][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.978][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.981][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:24.988][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:24.989][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:24.989][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:24.991][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:24.991][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:24.992][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:24.993][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:24.993][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.996][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.999][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:25.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:25.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:25.002][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:25.003][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:25.004][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:25.005][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:25.006][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:25.006][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:25.007][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:25.008][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:25.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:25.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.011][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:25.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:25.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.014][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:25.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:25.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:25.017][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:25.017][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:25.018][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:25.019][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:25.020][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:25.020][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:25.021][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:25.022][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:25.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:25.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.025][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:25.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:25.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.028][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:25.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:25.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:25.031][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:04:25.033][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:04:25.034][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1f74ce81a905644d346321032fe47e5f".
biodb.TRACE[2022-04-09 08:04:25.035][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:04:25.036][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1f74ce81a905644d346321032fe47e5f.content".
biodb.DEBUG[2022-04-09 08:04:25.038][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:25.039][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:25.039][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:25.041][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:25.041][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:25.042][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:25.042][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:25.043][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:25.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:25.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.046][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:25.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:25.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.049][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:25.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:25.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:25.052][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:25.053][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:25.053][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:25.055][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:25.055][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:25.056][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:25.057][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:25.057][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:25.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:25.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.060][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:25.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:25.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.063][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:25.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:25.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:25.067][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:04:25.069][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:04:25.070][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d7672f179ff5d0339b4462dafc99279b".
biodb.TRACE[2022-04-09 08:04:25.071][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:04:25.072][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d7672f179ff5d0339b4462dafc99279b.content".
biodb.DEBUG[2022-04-09 08:04:25.076][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:25.076][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:25.077][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:25.078][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:25.079][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:25.079][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:25.080][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:25.081][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:25.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:25.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.084][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:25.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:25.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.087][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:25.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:25.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:25.090][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:25.091][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:25.092][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:25.093][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:25.094][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:25.094][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:25.095][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:25.096][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:25.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:25.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.099][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:25.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:25.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.102][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:25.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:25.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:25.105][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:04:25.106][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:25.107][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:25.108][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:25.109][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:25.110][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:25.111][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:25.111][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:25.112][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.120][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.123][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:25.124][private$selectFields]
biodb.TRACE[2022-04-09 08:04:25.124][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:25.125][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:25.126][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:25.126][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.127][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.128][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.129][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.129][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.130][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.131][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.132][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.132][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:25.133][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:25.134][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.134][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.135][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.136][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.137][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:25.137][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.140][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.143][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.146][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2022-04-09 08:04:25.147][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:25.148][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:25.148][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:25.150][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:25.150][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:25.151][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:25.152][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:25.152][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.155][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.158][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:25.159][private$selectFields]
biodb.TRACE[2022-04-09 08:04:25.160][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:25.160][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:25.161][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:25.162][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.162][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.163][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.164][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.164][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.165][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.166][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.167][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.167][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:25.168][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:25.169][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.170][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.170][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.171][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.172][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:25.172][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.175][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.178][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.181][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2022-04-09 08:04:25.182][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:25.183][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:25.183][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:25.184][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:25.185][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:25.186][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:25.186][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:25.187][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.190][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.193][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:25.194][private$selectFields]
biodb.TRACE[2022-04-09 08:04:25.194][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:25.195][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:25.196][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:25.196][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.197][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.198][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.199][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.199][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.200][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.201][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.201][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.202][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:25.203][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:25.204][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.204][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.205][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.206][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.207][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:25.207][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.210][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.213][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.217][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3017].
biodb.DEBUG[2022-04-09 08:04:25.217][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:04:25.218][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-04-09 08:04:25.233][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:25.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:25.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.236][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:25.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:25.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.239][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:25.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:25.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.247][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:25.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:25.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.250][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:25.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:25.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.252][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:25.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:25.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.255][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:25.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:25.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.258][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:25.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:25.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.261][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:25.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:25.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.264][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:25.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:25.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.267][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:25.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:25.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.270][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:25.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:25.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:25.276][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:25.276][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:25.277][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:25.278][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:25.279][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:25.279][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:25.280][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:25.363][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:04:25.373][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:04:25.374][cch$loadFileContent] Trying to load 1 files from cache: [1]: "c60f2116f91d4ce61370ae6298305b49".
biodb.TRACE[2022-04-09 08:04:25.375][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:04:25.376][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c60f2116f91d4ce61370ae6298305b49.content".
biodb.DEBUG[2022-04-09 08:04:25.379][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:04:25.380][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:04:25.381][cch$loadFileContent] Trying to load 1 files from cache: [1]: "921bb2fccd1f3497458cb7cf8fd2ffda".
biodb.TRACE[2022-04-09 08:04:25.382][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:04:25.383][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/921bb2fccd1f3497458cb7cf8fd2ffda.content".
biodb.DEBUG[2022-04-09 08:04:25.385][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:25.386][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:25.386][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:25.388][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:25.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:25.389][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:25.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:25.391][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:25.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:25.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.394][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:25.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:25.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.397][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:25.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:25.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:25.400][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:25.400][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:25.401][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:25.402][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:25.403][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:25.403][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:25.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:25.405][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:25.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:25.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.408][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:25.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:25.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.411][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:25.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:25.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:25.414][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:25.414][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:25.415][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:25.416][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:25.417][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:25.417][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:25.418][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:25.419][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:25.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:25.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.422][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:25.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:25.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.425][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:25.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:25.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:25.428][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:04:25.429][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:25.429][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:25.430][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:25.431][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:25.432][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:25.433][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:25.433][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:25.434][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.437][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.440][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:25.441][private$selectFields]
biodb.TRACE[2022-04-09 08:04:25.441][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:25.442][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:25.443][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:25.443][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.444][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.445][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.446][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.446][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.447][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.448][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.449][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.449][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:25.450][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:25.451][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.451][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.452][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.453][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.453][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:25.454][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.457][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.460][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.463][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2022-04-09 08:04:25.464][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:25.464][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:25.465][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:25.466][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:25.467][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:25.467][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:25.468][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:25.469][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.472][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.475][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:25.475][private$selectFields]
biodb.TRACE[2022-04-09 08:04:25.476][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:25.477][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:25.478][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:25.478][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.479][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.480][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.480][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.481][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.482][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.483][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.484][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.484][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:25.485][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:25.486][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.486][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.487][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.488][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.489][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:25.489][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.492][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.495][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.499][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-04-09 08:04:25.504][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:25.505][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:25.505][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:25.507][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:25.508][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:25.508][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:25.509][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:25.510][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.513][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.516][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:25.516][private$selectFields]
biodb.TRACE[2022-04-09 08:04:25.517][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:25.518][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:25.518][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:25.519][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.520][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.520][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.521][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.522][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.523][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.523][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.524][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.525][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:25.526][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:25.526][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.527][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.528][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.528][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.529][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:25.530][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.533][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.536][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.539][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2022-04-09 08:04:25.539][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:04:25.540][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:04:25.542][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:25.542][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:25.543][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:25.544][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:25.545][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:25.545][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:25.546][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:25.634][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:04:25.637][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:04:25.638][cch$loadFileContent] Trying to load 1 files from cache: [1]: "839357b56387b64c91d43055dd5c5193".
biodb.TRACE[2022-04-09 08:04:25.638][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:04:25.639][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/839357b56387b64c91d43055dd5c5193.content".
biodb.DEBUG[2022-04-09 08:04:25.641][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:25.642][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:25.643][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:25.644][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:25.645][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:25.645][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:25.646][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:25.647][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:25.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:25.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.650][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:25.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:25.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.653][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:25.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:25.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:25.656][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:25.656][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:25.657][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:25.658][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:25.659][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:25.660][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:25.660][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:25.661][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:25.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:25.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.664][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:25.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:25.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.667][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:25.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:25.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:25.670][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:25.671][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:25.671][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:25.672][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:25.673][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:25.674][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:25.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:25.675][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:25.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:25.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.678][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:25.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:25.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.681][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:25.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:25.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:25.684][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:04:25.685][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:25.686][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:25.687][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:25.688][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:25.688][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:25.689][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:25.690][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:25.691][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.694][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.696][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:25.697][private$selectFields]
biodb.TRACE[2022-04-09 08:04:25.698][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:25.699][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:25.699][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:25.700][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.701][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.702][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.702][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.703][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.704][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.704][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.705][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.706][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:25.707][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:25.707][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.708][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.709][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.710][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.710][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:25.711][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.714][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.717][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.720][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2022-04-09 08:04:25.721][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:25.722][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:25.722][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:25.724][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:25.724][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:25.725][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:25.726][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:25.727][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.730][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.733][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:25.733][private$selectFields]
biodb.TRACE[2022-04-09 08:04:25.734][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:25.735][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:25.736][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:25.736][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.737][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.738][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.739][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.740][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.740][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.741][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.742][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.743][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:25.743][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:25.744][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.745][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.746][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.746][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.747][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:25.748][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.751][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.754][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.757][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2022-04-09 08:04:25.758][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:25.759][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:25.764][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:25.765][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:25.766][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:25.767][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:25.768][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:25.768][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.771][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.774][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:25.775][private$selectFields]
biodb.TRACE[2022-04-09 08:04:25.775][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:25.776][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:25.777][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:25.777][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.778][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.779][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.780][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.780][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.781][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.782][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.782][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.783][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:25.784][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:25.784][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.785][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.786][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.786][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.787][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:25.788][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.790][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.793][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.796][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2022-04-09 08:04:25.797][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:04:25.798][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:04:25.799][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:25.800][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:25.800][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:25.801][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:25.802][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:25.803][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:25.803][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:25.889][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:04:25.891][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:04:25.892][cch$loadFileContent] Trying to load 1 files from cache: [1]: "432bde1fb4bc526aec38c781f579d7cb".
biodb.TRACE[2022-04-09 08:04:25.893][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:04:25.894][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/432bde1fb4bc526aec38c781f579d7cb.content".
biodb.DEBUG[2022-04-09 08:04:25.896][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:25.897][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:25.898][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:25.899][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:25.900][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:25.900][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:25.901][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:25.902][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:25.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:25.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.905][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:25.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:25.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.908][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:25.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:25.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:25.911][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:25.911][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:25.912][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:25.913][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:25.914][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:25.915][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:25.915][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:25.916][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:25.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:25.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.919][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:25.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:25.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.922][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:25.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:25.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:25.925][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:25.926][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:25.926][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:25.927][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:25.928][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:25.929][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:25.929][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:25.930][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:25.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:25.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.933][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:25.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:25.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.936][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:25.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:25.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:25.939][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:04:25.940][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:25.941][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:25.942][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:25.943][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:25.944][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:25.944][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:25.945][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:25.946][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.949][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.952][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:25.952][private$selectFields]
biodb.TRACE[2022-04-09 08:04:25.953][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:25.954][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:25.954][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:25.955][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.956][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.957][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.957][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.958][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.959][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.960][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.960][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.961][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:25.962][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:25.962][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.963][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.964][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.965][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.965][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:25.966][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.969][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.972][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.975][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2022-04-09 08:04:25.976][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:25.977][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:25.977][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:25.979][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:25.979][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:25.980][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:25.981][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:25.981][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.985][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.988][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:25.988][private$selectFields]
biodb.TRACE[2022-04-09 08:04:25.989][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:25.990][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:25.991][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:25.991][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.992][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.993][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.994][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.994][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.995][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:25.996][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:25.997][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:25.997][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:25.998][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:25.999][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:26.000][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:26.000][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:26.001][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:26.002][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:26.003][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:26.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:26.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:26.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:26.006][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:26.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:26.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:26.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:26.009][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:26.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:26.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:26.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:26.012][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2022-04-09 08:04:26.013][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:26.013][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:26.014][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:26.020][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:26.021][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:26.022][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:26.022][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:26.023][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:26.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:26.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:26.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:26.026][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:26.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:26.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:26.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:26.029][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:26.030][private$selectFields]
biodb.TRACE[2022-04-09 08:04:26.030][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:26.031][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:26.032][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:26.032][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:26.033][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:26.034][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:26.034][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:26.035][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:26.036][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:26.037][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:26.037][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:26.038][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:26.039][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:26.040][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:26.040][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:26.041][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:26.042][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:26.042][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:26.043][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:26.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:26.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:26.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:26.046][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:26.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:26.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:26.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:26.049][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:26.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:26.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:26.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:26.052][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2022-04-09 08:04:26.053][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:04:26.053][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-04-09 08:04:26.067][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:04:26.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:04:26.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:26.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:26.070][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:04:26.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:04:26.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:26.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:26.073][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:04:26.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:04:26.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:26.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-04-09 08:04:26.077][biodb::testThat]
biodb.INFO [2022-04-09 08:04:26.078][biodb::testThat] Running test function test.annotateMzValues_real_values (" annotateMzValues() works correctly with real values. ").
biodb.INFO [2022-04-09 08:04:26.078][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:04:26.079][biodb::testThat]
biodb.TRACE[2022-04-09 08:04:26.081][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:04:26.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:04:26.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:26.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:26.084][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:04:26.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:04:26.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:26.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:26.087][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:04:26.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:04:26.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:26.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:26.090][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:26.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:26.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:26.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:26.093][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:26.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:26.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:26.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:26.096][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:26.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:26.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:26.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:26.099][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:26.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:26.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:26.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:26.102][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:26.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:26.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:26.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:26.105][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:26.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:26.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:26.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:26.107][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:26.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:26.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:26.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:26.110][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:26.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:26.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:26.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:26.114][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:26.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:26.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:26.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:26.117][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:26.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:26.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:26.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:26.120][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:26.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:26.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:26.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:26.123][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:26.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:26.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:26.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:26.128][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:26.128][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:26.129][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:26.130][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:26.131][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:26.132][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:26.132][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:26.217][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:04:26.219][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:04:26.220][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:04:26.221][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-04-09 08:04:26.656][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5*&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-04-09 08:04:27.310][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:04:27.324][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/73049ee91ee5cceff4f3bc8a5644d766.content"
biodb.TRACE[2022-04-09 08:04:27.344][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/73049ee91ee5cceff4f3bc8a5644d766.request"
biodb.DEBUG[2022-04-09 08:04:27.354][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:27.355][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:27.356][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:27.357][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:27.358][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:27.359][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:27.359][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:27.360][private$loadEntries] Creating entries from ids [1]: "3014".
biodb.DEBUG[2022-04-09 08:04:27.361][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:04:27.362][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3014".
biodb.TRACE[2022-04-09 08:04:27.363][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:04:27.364][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:04:27.365][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:04:27.366][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:04:27.366][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:04:27.367][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:04:27.369][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:27.370][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:27.375][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:27.379][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:27.379][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:27.380][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:27.381][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:27.382][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3014".
biodb.DEBUG[2022-04-09 08:04:27.384][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:04:27.385][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:04:27.386][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3014".
biodb.TRACE[2022-04-09 08:04:27.822][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3014).
biodb.DEBUG[2022-04-09 08:04:28.285][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:04:28.308][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/48c0bb0df5de824dbe83babbff8d81fe.content"
biodb.TRACE[2022-04-09 08:04:28.329][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/48c0bb0df5de824dbe83babbff8d81fe.request"
biodb.TRACE[2022-04-09 08:04:28.348][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3014.xml"
biodb.DEBUG[2022-04-09 08:04:28.355][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:04:28.372][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:04:28.372][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:04:28.374][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:28.374][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:28.375][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:28.377][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:28.377][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:28.378][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:28.379][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:28.380][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:28.381][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:28.382][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.383][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.383][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:28.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:28.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.393][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:28.393][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:28.394][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.395][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.396][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:28.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:28.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.405][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:28.406][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:28.407][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.407][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.409][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:28.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:28.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.418][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:28.419][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:28.419][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.420][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.421][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:28.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:28.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.435][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:28.436][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:28.437][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.437][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.438][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:28.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:28.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.447][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:28.448][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:28.449][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.449][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.450][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:28.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:28.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.459][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:28.460][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:28.460][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.461][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.462][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:28.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:28.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.471][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:28.471][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:28.472][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.473][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.474][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:28.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:28.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.482][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:28.483][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:28.484][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.485][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.486][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:28.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:28.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.494][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:28.495][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:28.495][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.496][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.497][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:28.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:28.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.505][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:28.506][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:28.507][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.507][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.508][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:28.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:28.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.517][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:28.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:28.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.520][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:28.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:28.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:28.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:28.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.526][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:28.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:28.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:28.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:28.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.532][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:28.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:28.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.534][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:28.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:28.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.544][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:28.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:28.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.551][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:28.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:28.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.554][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:28.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:28.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:28.557][self$createEntryFromContent] Accession numbers: 3014.
biodb.TRACE[2022-04-09 08:04:28.558][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:28.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:28.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.561][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:28.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:28.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.564][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:28.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:28.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:28.567][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:28.567][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:28.568][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:28.569][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:28.570][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:28.570][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:28.571][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:28.572][private$loadEntries] Creating entries from ids [1]: "7567".
biodb.DEBUG[2022-04-09 08:04:28.573][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:04:28.574][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7567".
biodb.TRACE[2022-04-09 08:04:28.575][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:04:28.576][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:04:28.576][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:04:28.577][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:04:28.578][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:04:28.579][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:04:28.581][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:28.581][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:28.582][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:28.583][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:28.584][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:28.584][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:28.585][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:28.586][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7567".
biodb.DEBUG[2022-04-09 08:04:28.588][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:04:28.589][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:04:28.590][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7567".
biodb.TRACE[2022-04-09 08:04:29.030][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7567).
biodb.DEBUG[2022-04-09 08:04:29.503][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:04:29.517][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5365299c16307afdd0b9fe7b73b123c.content"
biodb.TRACE[2022-04-09 08:04:29.537][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5365299c16307afdd0b9fe7b73b123c.request"
biodb.TRACE[2022-04-09 08:04:29.557][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7567.xml"
biodb.DEBUG[2022-04-09 08:04:29.564][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:04:29.581][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:04:29.582][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:04:29.583][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:29.584][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:29.585][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:29.586][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:29.587][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:29.587][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:29.588][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:29.590][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:29.591][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:29.592][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:29.592][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:29.593][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:29.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:29.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:29.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:29.608][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:29.609][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:29.609][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:29.610][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:29.611][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:29.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:29.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:29.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:29.620][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:29.621][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:29.621][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:29.622][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:29.623][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:29.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:29.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:29.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:29.632][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:29.633][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:29.633][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:29.634][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:29.635][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:29.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:29.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:29.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:29.644][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:29.644][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:29.645][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:29.646][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:29.647][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:29.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:29.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:29.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:29.655][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:29.656][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:29.657][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:29.658][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:29.658][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:29.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:29.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:29.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:29.667][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:29.668][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:29.669][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:29.669][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:29.670][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:29.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:29.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:29.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:29.679][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:29.680][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:29.681][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:29.681][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:29.682][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:29.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:29.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:29.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:29.691][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:29.692][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:29.692][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:29.693][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:29.694][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:29.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:29.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:29.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:29.703][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:29.704][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:29.705][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:29.706][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:29.707][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:29.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:29.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:29.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:29.716][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:29.717][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:29.717][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:29.718][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:29.719][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:29.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:29.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:29.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:29.734][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:29.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:29.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:29.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:29.737][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:29.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:29.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:29.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:29.740][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:29.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:29.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:29.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:29.743][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:29.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:29.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:29.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:29.746][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:29.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:29.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:29.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:29.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:29.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:29.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:29.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:29.751][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:29.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:29.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:29.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:29.761][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:29.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:29.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:29.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:29.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:29.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:29.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:29.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:29.766][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:29.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:29.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:29.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:29.769][self$createEntryFromContent] Accession numbers: 7567.
biodb.TRACE[2022-04-09 08:04:29.770][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:29.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:29.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:29.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:29.773][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:29.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:29.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:29.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:29.776][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:29.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:29.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:29.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:29.779][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:29.779][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:29.780][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:29.781][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:29.782][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:29.783][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:29.783][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:29.784][private$loadEntries] Creating entries from ids [1]: "8021".
biodb.DEBUG[2022-04-09 08:04:29.785][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:04:29.786][cch$loadFileContent] Trying to load 1 files from cache: [1]: "8021".
biodb.TRACE[2022-04-09 08:04:29.787][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:04:29.788][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:04:29.789][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:04:29.789][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:04:29.790][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:04:29.791][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:04:29.793][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:29.794][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:29.794][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:29.796][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:29.796][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:29.797][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:29.798][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:29.798][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=8021".
biodb.DEBUG[2022-04-09 08:04:29.800][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:04:29.801][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:04:29.802][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=8021".
biodb.TRACE[2022-04-09 08:04:30.266][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=8021).
biodb.DEBUG[2022-04-09 08:04:30.738][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:04:30.752][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6017fc384c334739eec9b216fa851a5.content"
biodb.TRACE[2022-04-09 08:04:30.773][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6017fc384c334739eec9b216fa851a5.request"
biodb.TRACE[2022-04-09 08:04:30.793][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8021.xml"
biodb.DEBUG[2022-04-09 08:04:30.801][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:04:30.824][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:04:30.825][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:04:30.826][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:30.827][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:30.828][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:30.829][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:30.830][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:30.830][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:30.831][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:30.833][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:30.834][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:30.834][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:30.835][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:30.836][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:30.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:30.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:30.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:30.845][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:30.846][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:30.846][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:30.847][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:30.848][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:30.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:30.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:30.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:30.857][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:30.858][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:30.858][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:30.859][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:30.860][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:30.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:30.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:30.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:30.869][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:30.870][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:30.870][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:30.871][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:30.872][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:30.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:30.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:30.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:30.881][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:30.882][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:30.882][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:30.883][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:30.884][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:30.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:30.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:30.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:30.893][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:30.894][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:30.894][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:30.895][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:30.896][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:30.897][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:30.898][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:30.898][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:30.899][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:30.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:30.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:30.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:30.909][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:30.909][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:30.910][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:30.911][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:30.912][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:30.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:30.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:30.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:30.921][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:30.922][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:30.923][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:30.923][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:30.924][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:30.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:30.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:30.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:30.939][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:30.940][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:30.940][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:30.941][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:30.942][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:30.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:30.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:30.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:30.951][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:30.952][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:30.952][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:30.953][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:30.954][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:30.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:30.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:30.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:30.963][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:30.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:30.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:30.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:30.966][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:30.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:30.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:30.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:30.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:30.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:30.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:30.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:30.972][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:30.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:30.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:30.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:30.975][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:30.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:30.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:30.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:30.977][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:30.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:30.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:30.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:30.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:30.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:30.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:30.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:30.989][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:30.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:30.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:30.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:30.992][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:30.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:30.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:30.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:30.995][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:30.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:30.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:30.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:30.998][self$createEntryFromContent] Accession numbers: 8021.
biodb.TRACE[2022-04-09 08:04:30.999][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:31.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:31.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:31.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:31.002][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:31.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:31.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:31.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:31.005][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:31.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:31.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:31.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:31.007][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:31.008][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:31.009][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:31.010][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:31.011][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:31.012][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:31.012][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:31.013][private$loadEntries] Creating entries from ids [1]: "30382".
biodb.DEBUG[2022-04-09 08:04:31.014][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:04:31.015][cch$loadFileContent] Trying to load 1 files from cache: [1]: "30382".
biodb.TRACE[2022-04-09 08:04:31.016][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:04:31.017][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:04:31.018][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:04:31.018][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:04:31.019][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:04:31.020][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:04:31.022][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:31.022][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:31.023][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:31.024][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:31.025][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:31.026][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:31.026][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:31.027][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30382".
biodb.DEBUG[2022-04-09 08:04:31.029][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:04:31.030][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:04:31.031][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30382".
biodb.TRACE[2022-04-09 08:04:31.946][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30382).
biodb.DEBUG[2022-04-09 08:04:32.409][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:04:32.423][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/762ae1b4688e0a5ef1a1419b25f545f9.content"
biodb.TRACE[2022-04-09 08:04:32.445][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/762ae1b4688e0a5ef1a1419b25f545f9.request"
biodb.TRACE[2022-04-09 08:04:32.472][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/30382.xml"
biodb.DEBUG[2022-04-09 08:04:32.479][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:04:32.495][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:04:32.496][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:04:32.497][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:32.498][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:32.498][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:32.500][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:32.500][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:32.501][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:32.502][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:32.503][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:32.504][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:32.505][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.505][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.506][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:32.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:32.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.515][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:32.516][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:32.517][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.517][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.518][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:32.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:32.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.527][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:32.528][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:32.528][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.529][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.530][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:32.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:32.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.539][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:32.540][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:32.540][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.541][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.542][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:32.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:32.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.551][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:32.552][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:32.552][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.553][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.554][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:32.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:32.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.563][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:32.564][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:32.564][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.565][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.566][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:32.567][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:32.568][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.568][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.569][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:32.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:32.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.582][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:32.583][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:32.584][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.585][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.585][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:32.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:32.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.594][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:32.595][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:32.595][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.596][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.597][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:32.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:32.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.606][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:32.606][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:32.607][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.608][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.609][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:32.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:32.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.617][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:32.618][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:32.618][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.619][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.620][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:32.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:32.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.628][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:32.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:32.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.631][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:32.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:32.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.634][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:32.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:32.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.637][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:32.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:32.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.640][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:32.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:32.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:32.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:32.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.645][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:32.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:32.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:32.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:32.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.657][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:32.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:32.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.660][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:32.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:32.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:32.662][self$createEntryFromContent] Accession numbers: 30382.
biodb.TRACE[2022-04-09 08:04:32.663][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:32.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:32.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.666][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:32.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:32.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.669][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:32.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:32.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:32.672][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:04:32.673][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:32.674][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:32.675][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:32.676][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:32.677][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:32.677][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:32.678][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:32.679][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:32.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:32.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.682][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:32.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:32.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.685][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:32.685][private$selectFields]
biodb.TRACE[2022-04-09 08:04:32.686][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:32.687][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:32.687][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:32.688][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:32.689][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:32.689][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.690][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.699][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:32.700][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:32.701][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.702][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.702][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:32.703][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:32.704][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:32.705][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:32.705][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.706][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.707][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:32.707][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:32.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:32.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.710][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:32.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:32.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.713][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:32.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:32.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.716][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2022-04-09 08:04:32.717][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:32.718][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:32.718][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:32.719][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:32.720][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:32.721][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:32.721][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:32.722][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:32.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:32.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.725][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:32.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:32.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.728][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:32.728][private$selectFields]
biodb.TRACE[2022-04-09 08:04:32.729][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:32.730][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:32.730][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:32.731][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:32.732][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:32.732][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.733][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.734][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:32.734][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:32.735][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.736][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.736][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:32.737][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:32.738][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:32.739][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:32.739][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.740][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.741][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:32.741][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:32.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:32.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.744][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:32.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:32.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.747][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:32.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:32.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.750][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [8021].
biodb.DEBUG[2022-04-09 08:04:32.750][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:32.751][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:32.752][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:32.753][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:32.753][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:32.754][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:32.755][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:32.756][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:32.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:32.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.758][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:32.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:32.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.761][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:32.762][private$selectFields]
biodb.TRACE[2022-04-09 08:04:32.762][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:32.763][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:32.763][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:32.764][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:32.765][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:32.766][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.766][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.767][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:32.768][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:32.768][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.769][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.770][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:32.770][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:32.771][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:32.772][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:32.772][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.773][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.774][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:32.774][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:32.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:32.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.777][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:32.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:32.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.780][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:32.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:32.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.783][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [30382].
biodb.DEBUG[2022-04-09 08:04:32.784][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:04:32.784][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:04:32.786][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:32.787][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:32.787][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:32.788][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:32.789][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:32.790][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:32.790][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:32.872][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:04:32.874][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:04:32.875][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:04:32.876][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-04-09 08:04:33.318][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-04-09 08:04:33.785][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:04:33.797][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d19727a9ac34aca2de50a6f942f16ddf.content"
biodb.TRACE[2022-04-09 08:04:33.816][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d19727a9ac34aca2de50a6f942f16ddf.request"
biodb.DEBUG[2022-04-09 08:04:33.825][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:33.825][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:33.826][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:33.827][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:33.828][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:33.829][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:33.829][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:33.830][private$loadEntries] Creating entries from ids [1]: "9710".
biodb.DEBUG[2022-04-09 08:04:33.831][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:04:33.832][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9710".
biodb.TRACE[2022-04-09 08:04:33.833][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:04:33.834][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:04:33.835][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:04:33.835][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:04:33.836][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:04:33.837][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:04:33.839][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:33.839][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:33.840][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:33.841][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:33.842][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:33.843][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:33.843][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:33.844][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9710".
biodb.DEBUG[2022-04-09 08:04:33.846][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:04:33.847][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:04:33.848][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9710".
biodb.TRACE[2022-04-09 08:04:34.357][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9710).
biodb.DEBUG[2022-04-09 08:04:35.061][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:04:35.075][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b7c920ea46a15bb7175f778579142c91.content"
biodb.TRACE[2022-04-09 08:04:35.104][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b7c920ea46a15bb7175f778579142c91.request"
biodb.TRACE[2022-04-09 08:04:35.123][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9710.xml"
biodb.DEBUG[2022-04-09 08:04:35.129][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:04:35.145][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:04:35.145][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:04:35.147][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:35.147][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:35.148][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:35.149][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:35.150][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:35.151][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:35.151][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:35.153][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:35.154][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:35.154][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:35.155][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:35.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:35.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:35.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:35.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:35.164][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:35.165][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:35.166][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:35.167][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:35.168][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:35.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:35.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:35.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:35.176][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:35.177][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:35.178][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:35.178][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:35.179][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:35.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:35.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:35.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:35.188][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:35.189][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:35.190][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:35.190][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:35.191][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:35.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:35.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:35.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:35.200][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:35.201][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:35.201][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:35.202][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:35.203][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:35.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:35.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:35.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:35.216][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:35.217][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:35.218][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:35.218][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:35.219][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:35.220][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:35.221][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:35.221][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:35.222][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:35.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:35.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:35.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:35.231][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:35.231][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:35.232][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:35.233][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:35.233][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:35.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:35.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:35.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:35.242][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:35.242][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:35.243][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:35.244][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:35.245][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:35.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:35.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:35.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:35.253][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:35.254][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:35.254][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:35.255][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:35.256][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:35.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:35.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:35.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:35.264][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:35.265][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:35.266][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:35.266][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:35.267][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:35.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:35.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:35.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:35.276][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:35.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:35.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:35.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:35.278][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:35.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:35.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:35.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:35.281][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:35.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:35.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:35.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:35.284][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:35.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:35.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:35.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:35.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:35.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:35.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:35.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:35.289][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:35.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:35.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:35.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:35.292][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:35.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:35.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:35.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:35.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:35.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:35.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:35.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:35.304][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:35.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:35.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:35.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:35.307][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:35.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:35.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:35.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:35.310][self$createEntryFromContent] Accession numbers: 9710.
biodb.TRACE[2022-04-09 08:04:35.311][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:35.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:35.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:35.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:35.314][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:35.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:35.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:35.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:35.316][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:35.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:35.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:35.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:35.319][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:35.320][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:35.321][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:35.322][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:35.323][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:35.323][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:35.324][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:35.325][private$loadEntries] Creating entries from ids [1]: "65530".
biodb.DEBUG[2022-04-09 08:04:35.325][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:04:35.327][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65530".
biodb.TRACE[2022-04-09 08:04:35.328][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:04:35.328][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:04:35.329][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:04:35.330][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:04:35.331][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:04:35.335][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:04:35.337][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:35.338][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:35.338][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:35.340][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:35.340][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:35.341][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:35.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:35.342][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65530".
biodb.DEBUG[2022-04-09 08:04:35.344][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:04:35.345][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:04:35.346][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65530".
biodb.TRACE[2022-04-09 08:04:35.789][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65530).
biodb.DEBUG[2022-04-09 08:04:36.299][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:04:36.320][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bb7ff6c0bdfa280406af23f96ee06f80.content"
biodb.TRACE[2022-04-09 08:04:36.339][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bb7ff6c0bdfa280406af23f96ee06f80.request"
biodb.TRACE[2022-04-09 08:04:36.358][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65530.xml"
biodb.DEBUG[2022-04-09 08:04:36.364][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:04:36.380][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:04:36.381][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:04:36.382][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:36.383][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:36.384][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:36.385][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:36.386][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:36.386][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:36.387][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:36.388][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:36.389][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:36.390][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:36.391][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:36.392][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:36.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:36.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:36.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:36.401][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:36.401][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:36.402][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:36.403][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:36.404][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:36.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:36.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:36.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:36.413][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:36.413][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:36.414][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:36.415][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:36.416][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:36.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:36.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:36.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:36.429][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:36.430][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:36.431][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:36.431][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:36.432][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:36.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:36.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:36.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:36.441][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:36.441][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:36.442][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:36.443][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:36.444][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:36.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:36.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:36.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:36.452][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:36.453][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:36.454][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:36.454][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:36.455][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:36.456][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:36.456][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:36.457][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:36.458][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:36.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:36.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:36.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:36.466][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:36.467][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:36.468][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:36.468][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:36.469][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:36.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:36.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:36.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:36.478][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:36.478][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:36.479][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:36.480][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:36.481][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:36.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:36.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:36.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:36.489][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:36.490][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:36.490][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:36.491][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:36.492][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:36.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:36.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:36.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:36.500][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:36.501][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:36.502][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:36.502][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:36.503][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:36.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:36.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:36.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:36.512][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:36.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:36.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:36.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:36.515][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:36.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:36.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:36.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:36.518][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:36.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:36.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:36.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:36.521][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:36.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:36.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:36.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:36.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:36.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:36.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:36.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:36.526][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:36.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:36.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:36.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:36.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:36.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:36.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:36.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:36.538][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:36.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:36.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:36.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:36.541][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:36.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:36.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:36.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:36.544][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:36.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:36.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:36.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:36.551][self$createEntryFromContent] Accession numbers: 65530.
biodb.TRACE[2022-04-09 08:04:36.551][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:36.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:36.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:36.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:36.554][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:36.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:36.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:36.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:36.557][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:36.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:36.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:36.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:36.560][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:36.560][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:36.561][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:36.562][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:36.563][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:36.564][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:36.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:36.565][private$loadEntries] Creating entries from ids [1]: "72338".
biodb.DEBUG[2022-04-09 08:04:36.566][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:04:36.567][cch$loadFileContent] Trying to load 1 files from cache: [1]: "72338".
biodb.TRACE[2022-04-09 08:04:36.568][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:04:36.568][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:04:36.569][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:04:36.570][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:04:36.571][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:04:36.571][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:04:36.573][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:36.574][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:36.574][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:36.576][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:36.576][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:36.577][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:36.577][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:36.578][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=72338".
biodb.DEBUG[2022-04-09 08:04:36.580][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:04:36.581][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:04:36.582][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=72338".
biodb.TRACE[2022-04-09 08:04:37.021][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=72338).
biodb.DEBUG[2022-04-09 08:04:37.490][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:04:37.503][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8e64dda61e0a44a21c5b0eb3609a4a7b.content"
biodb.TRACE[2022-04-09 08:04:37.523][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8e64dda61e0a44a21c5b0eb3609a4a7b.request"
biodb.TRACE[2022-04-09 08:04:37.542][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/72338.xml"
biodb.DEBUG[2022-04-09 08:04:37.549][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:04:37.566][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:04:37.567][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:04:37.568][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:37.569][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:37.569][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:37.571][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:37.571][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:37.572][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:37.573][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:37.574][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:37.575][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:37.576][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:37.577][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:37.578][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:37.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:37.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:37.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:37.591][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:37.592][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:37.593][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:37.593][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:37.594][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:37.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:37.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:37.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:37.603][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:37.604][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:37.605][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:37.605][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:37.606][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:37.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:37.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:37.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:37.615][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:37.616][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:37.616][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:37.617][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:37.618][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:37.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:37.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:37.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:37.627][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:37.627][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:37.628][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:37.629][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:37.630][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:37.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:37.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:37.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:37.638][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:37.639][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:37.640][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:37.640][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:37.641][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:37.642][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:37.643][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:37.643][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:37.644][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:37.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:37.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:37.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:37.653][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:37.654][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:37.654][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:37.655][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:37.656][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:37.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:37.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:37.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:37.665][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:37.665][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:37.666][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:37.667][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:37.668][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:37.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:37.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:37.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:37.676][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:37.677][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:37.678][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:37.679][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:37.680][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:37.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:37.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:37.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:37.689][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:37.689][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:37.690][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:37.691][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:37.692][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:37.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:37.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:37.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:37.701][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:37.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:37.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:37.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:37.704][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:37.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:37.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:37.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:37.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:37.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:37.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:37.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:37.714][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:37.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:37.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:37.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:37.717][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:37.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:37.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:37.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:37.720][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:37.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:37.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:37.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:37.722][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:37.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:37.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:37.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:37.731][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:37.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:37.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:37.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:37.734][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:37.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:37.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:37.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:37.737][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:37.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:37.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:37.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:37.740][self$createEntryFromContent] Accession numbers: 72338.
biodb.TRACE[2022-04-09 08:04:37.740][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:37.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:37.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:37.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:37.743][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:37.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:37.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:37.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:37.746][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:37.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:37.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:37.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:37.749][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:37.749][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:37.750][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:37.751][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:37.752][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:37.753][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:37.753][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:37.754][private$loadEntries] Creating entries from ids [1]: "77926".
biodb.DEBUG[2022-04-09 08:04:37.755][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:04:37.756][cch$loadFileContent] Trying to load 1 files from cache: [1]: "77926".
biodb.TRACE[2022-04-09 08:04:37.757][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:04:37.758][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:04:37.758][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:04:37.759][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:04:37.760][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:04:37.760][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:04:37.762][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:37.763][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:37.764][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:37.765][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:37.766][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:37.766][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:37.767][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:37.768][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77926".
biodb.DEBUG[2022-04-09 08:04:37.770][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:04:37.770][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:04:37.771][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77926".
biodb.TRACE[2022-04-09 08:04:38.434][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77926).
biodb.DEBUG[2022-04-09 08:04:38.923][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:04:38.936][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9ad4fcb4fcba98dcbec5ee6292352f7b.content"
biodb.TRACE[2022-04-09 08:04:38.956][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9ad4fcb4fcba98dcbec5ee6292352f7b.request"
biodb.TRACE[2022-04-09 08:04:38.976][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77926.xml"
biodb.DEBUG[2022-04-09 08:04:38.984][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:04:39.007][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:04:39.008][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:04:39.009][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:39.010][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:39.011][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:39.012][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:39.013][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:39.013][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:39.014][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:39.016][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:39.016][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:39.017][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.018][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:39.019][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:39.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:39.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:39.027][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:39.028][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:39.029][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.030][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:39.030][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:39.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:39.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:39.039][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:39.040][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:39.040][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.041][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:39.042][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:39.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:39.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:39.051][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:39.051][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:39.052][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.053][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:39.054][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:39.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:39.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:39.062][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:39.063][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:39.064][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.064][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:39.065][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:39.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:39.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:39.074][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:39.075][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:39.076][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.076][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:39.077][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:39.078][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:39.079][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.079][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:39.080][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:39.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:39.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:39.089][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:39.090][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:39.090][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.091][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:39.092][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:39.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:39.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:39.101][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:39.102][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:39.102][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.103][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:39.104][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:39.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:39.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:39.113][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:39.114][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:39.114][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.115][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:39.116][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:39.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:39.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:39.130][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:39.131][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:39.131][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.132][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:39.133][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:39.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:39.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:39.142][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:39.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:39.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:39.145][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:39.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:39.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:39.147][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:39.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:39.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:39.150][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:39.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:39.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:39.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:39.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:39.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:39.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:39.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:39.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:39.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:39.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:39.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:39.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:39.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:39.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:39.170][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:39.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:39.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:39.173][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:39.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:39.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:39.176][self$createEntryFromContent] Accession numbers: 77926.
biodb.TRACE[2022-04-09 08:04:39.177][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:39.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:39.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:39.180][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:39.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:39.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:39.183][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:39.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:39.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:39.185][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:39.186][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:39.187][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:39.188][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:39.189][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:39.189][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:39.190][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:39.191][private$loadEntries] Creating entries from ids [1]: "82369".
biodb.DEBUG[2022-04-09 08:04:39.191][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:04:39.193][cch$loadFileContent] Trying to load 1 files from cache: [1]: "82369".
biodb.TRACE[2022-04-09 08:04:39.193][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:04:39.194][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:04:39.195][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:04:39.196][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:04:39.196][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:04:39.197][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:04:39.199][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:39.200][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:39.200][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:39.202][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:39.202][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:39.203][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:39.204][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:39.204][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=82369".
biodb.DEBUG[2022-04-09 08:04:39.206][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:04:39.207][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:04:39.208][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=82369".
biodb.TRACE[2022-04-09 08:04:39.649][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=82369).
biodb.DEBUG[2022-04-09 08:04:40.110][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:04:40.124][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/141011223a89b45316c20d1fd91b47fd.content"
biodb.TRACE[2022-04-09 08:04:40.145][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/141011223a89b45316c20d1fd91b47fd.request"
biodb.TRACE[2022-04-09 08:04:40.172][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/82369.xml"
biodb.DEBUG[2022-04-09 08:04:40.179][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:04:40.195][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:04:40.196][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:04:40.197][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:40.198][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:40.199][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:40.200][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:40.201][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:40.201][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:40.202][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:40.204][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:40.204][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:40.205][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:40.206][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:40.207][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:40.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:40.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:40.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:40.216][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:40.216][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:40.217][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:40.218][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:40.219][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:40.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:40.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:40.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:40.227][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:40.228][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:40.229][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:40.230][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:40.231][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:40.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:40.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:40.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:40.239][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:40.240][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:40.241][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:40.242][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:40.242][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:40.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:40.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:40.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:40.251][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:40.252][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:40.253][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:40.254][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:40.255][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:40.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:40.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:40.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:40.264][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:40.265][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:40.266][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:40.266][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:40.267][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:40.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:40.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:40.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:40.276][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:40.277][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:40.278][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:40.279][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:40.280][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:40.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:40.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:40.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:40.294][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:40.295][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:40.295][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:40.296][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:40.297][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:40.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:40.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:40.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:40.306][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:40.307][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:40.307][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:40.308][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:40.309][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:40.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:40.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:40.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:40.318][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:40.318][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:40.319][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:40.320][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:40.321][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:40.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:40.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:40.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:40.329][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:40.330][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:40.331][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:40.331][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:40.332][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:40.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:40.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:40.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:40.341][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:40.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:40.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:40.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:40.343][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:40.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:40.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:40.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:40.346][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:40.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:40.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:40.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:40.349][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:40.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:40.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:40.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:40.352][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:40.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:40.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:40.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:40.354][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:40.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:40.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:40.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:40.357][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:40.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:40.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:40.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:40.366][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:40.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:40.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:40.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:40.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:40.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:40.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:40.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:40.372][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:40.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:40.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:40.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:40.375][self$createEntryFromContent] Accession numbers: 82369.
biodb.TRACE[2022-04-09 08:04:40.376][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:40.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:40.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:40.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:40.379][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:40.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:40.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:40.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:40.382][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:40.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:40.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:40.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:40.385][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:40.385][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:40.386][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:40.387][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:40.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:40.389][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:40.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:40.390][private$loadEntries] Creating entries from ids [1]: "90204".
biodb.DEBUG[2022-04-09 08:04:40.391][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:04:40.392][cch$loadFileContent] Trying to load 1 files from cache: [1]: "90204".
biodb.TRACE[2022-04-09 08:04:40.393][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:04:40.394][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:04:40.395][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:04:40.396][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:04:40.397][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:04:40.397][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:04:40.399][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:40.400][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:40.401][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:40.402][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:40.403][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:40.403][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:40.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:40.405][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=90204".
biodb.DEBUG[2022-04-09 08:04:40.412][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:04:40.413][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:04:40.414][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=90204".
biodb.TRACE[2022-04-09 08:04:40.850][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=90204).
biodb.DEBUG[2022-04-09 08:04:41.311][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:04:41.334][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bd50d349ae7e6e2bbccffc7e4e5f18de.content"
biodb.TRACE[2022-04-09 08:04:41.354][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bd50d349ae7e6e2bbccffc7e4e5f18de.request"
biodb.TRACE[2022-04-09 08:04:41.374][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/90204.xml"
biodb.DEBUG[2022-04-09 08:04:41.381][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:04:41.397][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:04:41.398][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:04:41.399][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:41.400][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:41.400][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:41.402][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:41.402][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:41.403][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:41.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:41.405][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:41.406][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:41.407][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:41.408][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:41.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:41.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:41.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:41.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:41.418][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:41.418][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:41.419][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:41.420][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:41.421][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:41.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:41.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:41.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:41.430][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:41.431][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:41.437][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:41.437][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:41.439][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:41.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:41.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:41.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:41.451][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:41.452][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:41.452][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:41.453][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:41.454][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:41.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:41.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:41.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:41.482][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:41.483][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:41.484][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:41.484][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:41.485][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:41.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:41.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:41.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:41.495][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:41.495][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:41.496][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:41.497][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:41.498][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:41.499][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:41.500][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:41.500][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:41.501][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:41.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:41.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:41.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:41.511][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:41.511][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:41.512][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:41.513][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:41.514][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:41.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:41.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:41.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:41.523][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:41.524][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:41.524][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:41.525][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:41.526][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:41.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:41.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:41.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:41.535][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:41.536][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:41.537][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:41.538][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:41.539][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:41.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:41.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:41.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:41.548][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:41.549][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:41.549][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:41.550][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:41.551][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:41.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:41.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:41.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:41.561][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:41.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:41.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:41.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:41.564][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:41.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:41.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:41.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:41.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:41.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:41.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:41.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:41.570][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:41.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:41.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:41.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:41.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:41.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:41.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:41.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:41.577][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:41.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:41.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:41.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:41.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:41.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:41.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:41.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:41.589][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:41.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:41.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:41.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:41.593][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:41.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:41.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:41.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:41.596][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:41.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:41.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:41.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:41.599][self$createEntryFromContent] Accession numbers: 90204.
biodb.TRACE[2022-04-09 08:04:41.599][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:41.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:41.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:41.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:41.607][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:41.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:41.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:41.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:41.611][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:41.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:41.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:41.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:41.614][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:41.615][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:41.615][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:41.617][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:41.618][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:41.618][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:41.619][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:41.620][private$loadEntries] Creating entries from ids [1]: "132793".
biodb.DEBUG[2022-04-09 08:04:41.620][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:04:41.622][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132793".
biodb.TRACE[2022-04-09 08:04:41.623][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:04:41.623][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:04:41.624][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:04:41.625][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:04:41.626][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:04:41.626][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:04:41.629][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:41.629][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:41.630][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:41.631][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:41.632][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:41.633][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:41.633][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:41.634][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132793".
biodb.DEBUG[2022-04-09 08:04:41.636][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:04:41.637][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:04:41.638][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132793".
biodb.TRACE[2022-04-09 08:04:42.078][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132793).
biodb.DEBUG[2022-04-09 08:04:42.552][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:04:42.566][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a797bec3bbec3ca7a5b4b96140b735a3.content"
biodb.TRACE[2022-04-09 08:04:42.586][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a797bec3bbec3ca7a5b4b96140b735a3.request"
biodb.TRACE[2022-04-09 08:04:42.605][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132793.xml"
biodb.DEBUG[2022-04-09 08:04:42.612][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:04:42.629][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:04:42.630][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:04:42.632][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:42.633][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:42.633][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:42.635][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:42.635][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:42.636][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:42.637][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:42.639][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:42.640][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:42.640][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.641][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:42.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:42.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.651][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:42.652][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:42.653][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.654][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.655][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:42.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:42.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.670][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:42.671][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:42.672][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.673][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.674][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:42.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:42.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.682][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:42.683][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:42.684][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.685][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.685][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:42.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:42.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.694][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:42.695][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:42.696][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.696][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.697][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:42.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:42.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.706][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:42.707][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:42.708][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.708][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.709][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:42.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:42.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.718][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:42.719][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:42.719][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.720][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.721][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:42.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:42.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.730][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:42.730][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:42.731][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.732][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.733][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:42.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:42.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.741][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:42.742][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:42.743][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.743][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.745][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:42.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:42.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.753][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:42.754][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:42.755][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.756][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.757][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:42.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:42.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.766][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:42.767][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:42.767][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.768][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.769][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:42.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:42.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.778][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.781][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.789][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:42.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:42.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.792][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.795][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:42.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:42.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:42.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:42.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:42.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:42.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.810][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:42.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:42.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.813][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:42.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:42.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.816][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:42.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:42.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:42.819][self$createEntryFromContent] Accession numbers: 132793.
biodb.TRACE[2022-04-09 08:04:42.820][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:42.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:42.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.822][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:42.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:42.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.825][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:42.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:42.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:42.828][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:04:42.829][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:42.830][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:42.831][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:42.832][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:42.833][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:42.833][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:42.834][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:42.835][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.838][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.840][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:42.841][private$selectFields]
biodb.TRACE[2022-04-09 08:04:42.842][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:42.842][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:42.843][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:42.844][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.845][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.845][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.846][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.847][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.847][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.848][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.849][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.850][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:42.850][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:42.851][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.852][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.852][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.853][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.854][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:42.854][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.857][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.860][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.863][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65530].
biodb.DEBUG[2022-04-09 08:04:42.864][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:42.865][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:42.865][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:42.867][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:42.867][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:42.868][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:42.869][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:42.869][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.872][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.875][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:42.876][private$selectFields]
biodb.TRACE[2022-04-09 08:04:42.877][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:42.877][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:42.878][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:42.879][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.879][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.880][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.881][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.882][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.882][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.883][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.884][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.885][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:42.885][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:42.886][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.887][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.888][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.888][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.889][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:42.890][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.893][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.896][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.899][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [90204].
biodb.DEBUG[2022-04-09 08:04:42.900][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:42.900][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:42.901][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:42.902][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:42.903][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:42.904][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:42.904][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:42.905][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.908][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.915][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:42.916][private$selectFields]
biodb.TRACE[2022-04-09 08:04:42.917][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:42.918][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:42.919][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:42.919][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.920][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.921][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.922][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.922][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.923][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.924][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.924][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.925][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:42.926][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:42.927][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.927][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.928][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.929][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.929][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:42.930][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.933][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.936][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.939][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132793].
biodb.DEBUG[2022-04-09 08:04:42.940][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:04:42.940][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:04:42.942][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:42.943][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:42.943][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:42.944][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:42.945][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:42.946][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:42.946][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:43.027][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:04:43.030][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:04:43.030][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:04:43.031][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-04-09 08:04:43.475][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-04-09 08:04:43.935][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:04:43.950][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bd904440f4fc2972890a98c52c563f7a.content"
biodb.TRACE[2022-04-09 08:04:43.980][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bd904440f4fc2972890a98c52c563f7a.request"
biodb.DEBUG[2022-04-09 08:04:43.989][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:43.989][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:43.990][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:43.991][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:43.992][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:43.993][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:43.993][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:43.994][private$loadEntries] Creating entries from ids [1]: "131378".
biodb.DEBUG[2022-04-09 08:04:43.995][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:04:43.996][cch$loadFileContent] Trying to load 1 files from cache: [1]: "131378".
biodb.TRACE[2022-04-09 08:04:43.997][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:04:43.998][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:04:43.999][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:04:44.000][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:04:44.000][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:04:44.001][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:04:44.003][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:44.004][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:44.004][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:44.006][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:44.006][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:44.007][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:44.007][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:44.008][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=131378".
biodb.DEBUG[2022-04-09 08:04:44.010][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:04:44.011][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:04:44.012][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=131378".
biodb.TRACE[2022-04-09 08:04:44.449][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=131378).
biodb.DEBUG[2022-04-09 08:04:44.919][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:04:44.932][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5b759b1dd2dc96585e60782e41aa0772.content"
biodb.TRACE[2022-04-09 08:04:44.952][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5b759b1dd2dc96585e60782e41aa0772.request"
biodb.TRACE[2022-04-09 08:04:44.972][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/131378.xml"
biodb.DEBUG[2022-04-09 08:04:44.979][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:04:44.996][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:04:44.997][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:04:44.998][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:44.999][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:44.999][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:45.007][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:45.008][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:45.009][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:45.010][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:45.012][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:45.013][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:45.014][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:45.014][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:45.015][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:45.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:45.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:45.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:45.024][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:45.025][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:45.026][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:45.027][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:45.027][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:45.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:45.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:45.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:45.036][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:45.037][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:45.038][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:45.038][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:45.039][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:45.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:45.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:45.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:45.048][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:45.049][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:45.049][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:45.050][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:45.051][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:45.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:45.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:45.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:45.059][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:45.060][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:45.061][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:45.061][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:45.062][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:45.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:45.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:45.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:45.071][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:45.072][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:45.072][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:45.073][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:45.074][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:45.075][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:45.075][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:45.076][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:45.077][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:45.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:45.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:45.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:45.086][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:45.087][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:45.087][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:45.088][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:45.089][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:45.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:45.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:45.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:45.098][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:45.099][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:45.099][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:45.100][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:45.101][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:45.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:45.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:45.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:45.111][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:45.111][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:45.112][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:45.113][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:45.114][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:45.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:45.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:45.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:45.123][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:45.124][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:45.125][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:45.125][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:45.126][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:45.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:45.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:45.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:45.142][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:45.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:45.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:45.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:45.145][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:45.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:45.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:45.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:45.148][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:45.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:45.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:45.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:45.150][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:45.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:45.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:45.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:45.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:45.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:45.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:45.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:45.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:45.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:45.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:45.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:45.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:45.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:45.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:45.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:45.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:45.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:45.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:45.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:45.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:45.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:45.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:45.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:45.174][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:45.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:45.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:45.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:45.177][self$createEntryFromContent] Accession numbers: 131378.
biodb.TRACE[2022-04-09 08:04:45.178][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:45.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:45.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:45.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:45.181][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:45.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:45.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:45.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:45.183][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:45.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:45.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:45.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:45.187][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:04:45.189][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:04:45.190][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:04:45.191][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-04-09 08:04:45.627][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2*&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-04-09 08:04:46.100][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:04:46.114][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9a7be5ffc012df03c41d74610ef07a76.content"
biodb.TRACE[2022-04-09 08:04:46.134][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9a7be5ffc012df03c41d74610ef07a76.request"
biodb.DEBUG[2022-04-09 08:04:46.143][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:46.144][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:46.144][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:46.146][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:46.147][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:46.147][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:46.148][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:46.149][private$loadEntries] Creating entries from ids [1]: "51836".
biodb.DEBUG[2022-04-09 08:04:46.150][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:04:46.151][cch$loadFileContent] Trying to load 1 files from cache: [1]: "51836".
biodb.TRACE[2022-04-09 08:04:46.152][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:04:46.153][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:04:46.154][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:04:46.155][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:04:46.156][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:04:46.156][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:04:46.158][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:46.159][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:46.160][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:46.161][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:46.162][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:46.163][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:46.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:46.164][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51836".
biodb.DEBUG[2022-04-09 08:04:46.167][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:04:46.167][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:04:46.168][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51836".
biodb.TRACE[2022-04-09 08:04:46.615][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51836).
biodb.DEBUG[2022-04-09 08:04:47.079][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:04:47.094][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1fe2079ad59bca4bc82b2cd14ed8e8a1.content"
biodb.TRACE[2022-04-09 08:04:47.126][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1fe2079ad59bca4bc82b2cd14ed8e8a1.request"
biodb.TRACE[2022-04-09 08:04:47.146][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51836.xml"
biodb.DEBUG[2022-04-09 08:04:47.153][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:04:47.170][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:04:47.171][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:04:47.173][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:47.173][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:47.174][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:47.176][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:47.176][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:47.177][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:47.178][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:47.179][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:47.180][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:47.181][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:47.182][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:47.183][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:47.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:47.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:47.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:47.192][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:47.193][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:47.193][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:47.194][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:47.195][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:47.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:47.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:47.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:47.204][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:47.205][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:47.206][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:47.207][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:47.208][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:47.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:47.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:47.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:47.217][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:47.218][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:47.219][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:47.220][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:47.221][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:47.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:47.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:47.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:47.230][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:47.231][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:47.232][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:47.233][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:47.234][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:47.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:47.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:47.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:47.250][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:47.251][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:47.252][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:47.253][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:47.254][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:47.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:47.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:47.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:47.263][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:47.264][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:47.264][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:47.265][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:47.266][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:47.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:47.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:47.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:47.275][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:47.276][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:47.277][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:47.278][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:47.279][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:47.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:47.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:47.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:47.288][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:47.288][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:47.289][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:47.290][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:47.291][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:47.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:47.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:47.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:47.300][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:47.301][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:47.301][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:47.302][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:47.303][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:47.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:47.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:47.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:47.312][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:47.313][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:47.314][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:47.314][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:47.315][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:47.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:47.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:47.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:47.324][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:47.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:47.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:47.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:47.327][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:47.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:47.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:47.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:47.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:47.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:47.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:47.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:47.333][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:47.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:47.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:47.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:47.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:47.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:47.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:47.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:47.340][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:47.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:47.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:47.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:47.343][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:47.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:47.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:47.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:47.353][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:47.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:47.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:47.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:47.356][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:47.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:47.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:47.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:47.359][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:47.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:47.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:47.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:47.362][self$createEntryFromContent] Accession numbers: 51836.
biodb.TRACE[2022-04-09 08:04:47.363][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:47.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:47.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:47.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:47.366][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:47.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:47.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:47.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:47.374][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:47.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:47.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:47.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:47.378][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:47.379][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:47.380][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:47.381][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:47.382][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:47.382][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:47.383][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:47.384][private$loadEntries] Creating entries from ids [1]: "51837".
biodb.DEBUG[2022-04-09 08:04:47.385][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:04:47.386][cch$loadFileContent] Trying to load 1 files from cache: [1]: "51837".
biodb.TRACE[2022-04-09 08:04:47.387][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:04:47.387][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:04:47.388][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:04:47.389][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:04:47.390][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:04:47.391][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:04:47.393][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:47.393][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:47.394][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:47.395][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:47.396][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:47.397][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:47.397][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:47.398][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51837".
biodb.DEBUG[2022-04-09 08:04:47.400][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:04:47.401][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:04:47.402][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51837".
biodb.TRACE[2022-04-09 08:04:47.849][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51837).
biodb.DEBUG[2022-04-09 08:04:48.321][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:04:48.335][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1588f004fb5de8667ae1af7433b2932e.content"
biodb.TRACE[2022-04-09 08:04:48.355][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1588f004fb5de8667ae1af7433b2932e.request"
biodb.TRACE[2022-04-09 08:04:48.375][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51837.xml"
biodb.DEBUG[2022-04-09 08:04:48.382][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:04:48.399][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:04:48.400][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:04:48.401][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:48.402][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:48.403][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:48.404][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:48.405][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:48.405][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:48.406][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:48.408][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:48.409][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:48.410][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:48.410][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:48.411][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:48.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:48.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:48.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:48.421][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:48.422][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:48.422][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:48.423][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:48.424][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:48.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:48.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:48.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:48.439][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:48.440][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:48.441][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:48.441][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:48.442][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:48.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:48.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:48.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:48.451][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:48.452][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:48.453][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:48.453][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:48.454][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:48.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:48.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:48.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:48.463][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:48.464][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:48.464][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:48.465][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:48.466][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:48.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:48.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:48.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:48.475][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:48.475][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:48.476][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:48.477][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:48.478][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:48.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:48.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:48.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:48.487][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:48.487][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:48.488][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:48.489][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:48.490][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:48.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:48.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:48.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:48.498][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:48.499][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:48.500][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:48.500][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:48.501][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:48.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:48.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:48.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:48.510][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:48.511][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:48.512][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:48.512][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:48.513][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:48.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:48.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:48.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:48.523][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:48.523][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:48.524][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:48.525][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:48.526][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:48.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:48.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:48.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:48.535][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:48.536][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:48.537][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:48.537][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:48.538][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:48.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:48.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:48.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:48.548][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:48.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:48.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:48.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:48.556][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:48.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:48.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:48.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:48.559][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:48.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:48.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:48.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:48.562][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:48.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:48.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:48.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:48.565][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:48.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:48.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:48.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:48.568][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:48.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:48.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:48.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:48.571][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:48.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:48.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:48.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:48.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:48.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:48.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:48.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:48.583][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:48.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:48.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:48.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:48.586][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:48.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:48.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:48.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:48.589][self$createEntryFromContent] Accession numbers: 51837.
biodb.TRACE[2022-04-09 08:04:48.590][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:48.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:48.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:48.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:48.593][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:48.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:48.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:48.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:48.595][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:48.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:48.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:48.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:48.598][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:48.599][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:48.600][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:48.601][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:48.602][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:48.602][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:48.603][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:48.604][private$loadEntries] Creating entries from ids [1]: "132205".
biodb.DEBUG[2022-04-09 08:04:48.604][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:04:48.606][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132205".
biodb.TRACE[2022-04-09 08:04:48.606][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:04:48.607][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:04:48.608][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:04:48.609][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:04:48.610][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:04:48.610][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:04:48.612][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:48.613][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:48.614][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:48.615][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:48.616][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:48.616][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:48.617][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:48.618][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132205".
biodb.DEBUG[2022-04-09 08:04:48.620][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:04:48.621][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:04:48.622][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132205".
biodb.TRACE[2022-04-09 08:04:49.058][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132205).
biodb.DEBUG[2022-04-09 08:04:49.529][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:04:49.543][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0bfa2ac1d845d7db5b781e9a39528bb3.content"
biodb.TRACE[2022-04-09 08:04:49.563][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0bfa2ac1d845d7db5b781e9a39528bb3.request"
biodb.TRACE[2022-04-09 08:04:49.584][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132205.xml"
biodb.DEBUG[2022-04-09 08:04:49.592][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:04:49.617][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:04:49.618][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:04:49.619][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:49.620][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:49.621][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:49.622][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:49.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:49.624][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:49.624][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:49.626][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:49.627][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:49.627][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.628][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.629][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:49.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:49.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.638][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:49.639][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:49.640][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.640][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.641][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:49.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:49.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.650][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:49.651][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:49.652][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.652][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.653][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:49.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:49.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.662][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:49.663][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:49.664][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.664][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.665][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:49.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:49.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.674][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:49.675][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:49.675][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.676][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.677][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:49.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:49.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.686][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:49.686][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:49.687][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.688][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.689][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:49.690][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:49.690][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.691][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.692][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:49.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:49.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.701][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:49.702][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:49.703][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.703][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.704][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:49.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:49.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.713][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:49.714][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:49.715][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.716][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.717][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:49.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:49.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.737][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:49.738][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:49.739][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.739][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.740][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:49.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:49.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.749][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:49.750][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:49.750][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.751][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.752][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:49.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:49.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.761][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:49.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:49.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.763][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:49.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:49.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.766][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:49.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:49.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.769][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:49.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:49.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.772][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:49.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:49.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.775][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:49.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:49.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.778][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:49.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:49.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:49.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:49.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.789][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:49.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:49.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.792][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:49.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:49.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:49.795][self$createEntryFromContent] Accession numbers: 132205.
biodb.TRACE[2022-04-09 08:04:49.796][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:49.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:49.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.799][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:49.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:49.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.802][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:49.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:49.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:49.805][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:04:49.806][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:49.807][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:49.807][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:49.809][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:49.809][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:49.810][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:49.810][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:49.811][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:49.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:49.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.814][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:49.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:49.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.817][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:49.818][private$selectFields]
biodb.TRACE[2022-04-09 08:04:49.818][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:49.819][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:49.820][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:49.821][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:49.821][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:49.822][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.823][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.824][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:49.824][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:49.825][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.826][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.827][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:49.827][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:49.828][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:49.829][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:49.830][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.830][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.831][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:49.832][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:49.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:49.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.834][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:49.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:49.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.837][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:49.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:49.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.840][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51836].
biodb.DEBUG[2022-04-09 08:04:49.841][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:49.842][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:49.842][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:49.844][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:49.844][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:49.845][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:49.846][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:49.846][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:49.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:49.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.849][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:49.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:49.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.857][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:49.858][private$selectFields]
biodb.TRACE[2022-04-09 08:04:49.859][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:49.860][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:49.861][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:49.861][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:49.862][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:49.863][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.864][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.864][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:49.865][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:49.866][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.867][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.867][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:49.868][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:49.869][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:49.870][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:49.870][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.871][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.872][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:49.872][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:49.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:49.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.875][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:49.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:49.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.878][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:49.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:49.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.881][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51837].
biodb.DEBUG[2022-04-09 08:04:49.882][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:49.883][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:49.884][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:49.885][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:49.886][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:49.886][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:49.887][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:49.888][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:49.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:49.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.891][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:49.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:49.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.893][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:49.894][private$selectFields]
biodb.TRACE[2022-04-09 08:04:49.895][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:49.895][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:49.896][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:49.897][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:49.898][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:49.898][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.899][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.900][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:49.901][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:49.901][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.902][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.903][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:49.903][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:49.904][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:49.905][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:49.905][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.906][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.907][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:49.908][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:49.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:49.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.910][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:49.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:49.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.913][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:49.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:49.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.916][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132205].
biodb.DEBUG[2022-04-09 08:04:49.917][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:04:49.918][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:04:49.933][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:49.934][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:49.934][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:49.935][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:49.936][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:49.937][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:49.937][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:50.026][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:04:50.028][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:04:50.029][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1e3885f0c8b7bc081513880959401862".
biodb.TRACE[2022-04-09 08:04:50.030][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:04:50.031][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1e3885f0c8b7bc081513880959401862.content".
biodb.DEBUG[2022-04-09 08:04:50.033][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:04:50.035][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:04:50.036][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4b7e19492b2d1086a5dba1710a3b39b".
biodb.TRACE[2022-04-09 08:04:50.037][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:04:50.038][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f4b7e19492b2d1086a5dba1710a3b39b.content".
biodb.DEBUG[2022-04-09 08:04:50.039][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:50.040][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:50.041][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:50.042][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:50.043][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:50.043][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:50.044][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:50.045][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.048][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.051][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:50.054][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:04:50.056][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:04:50.057][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d57f841033be8ab371045edb0388ed60".
biodb.TRACE[2022-04-09 08:04:50.058][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:04:50.059][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d57f841033be8ab371045edb0388ed60.content".
biodb.DEBUG[2022-04-09 08:04:50.060][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:04:50.062][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:50.062][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:50.063][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:50.064][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:50.065][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:50.066][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:50.066][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:50.067][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.070][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.073][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:50.074][private$selectFields]
biodb.TRACE[2022-04-09 08:04:50.074][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:50.075][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:50.076][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:50.077][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.077][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.078][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.079][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.080][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.080][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.081][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.082][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.083][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:50.083][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:50.084][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.085][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.086][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.086][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.087][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:50.088][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.091][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.094][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.097][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-04-09 08:04:50.098][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:04:50.099][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:04:50.100][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:50.101][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:50.101][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:50.103][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:50.103][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:50.104][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:50.105][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:50.191][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:04:50.193][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:04:50.194][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3f1d442725dcc6ae0abe5c87cfaad307".
biodb.TRACE[2022-04-09 08:04:50.195][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:04:50.196][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3f1d442725dcc6ae0abe5c87cfaad307.content".
biodb.DEBUG[2022-04-09 08:04:50.198][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:50.199][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:50.199][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:50.201][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:50.201][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:50.202][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:50.203][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:50.204][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.207][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.210][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:50.213][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:50.214][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:50.214][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:50.216][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:50.216][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:50.217][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:50.218][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:50.218][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.222][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.225][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:50.228][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:04:50.230][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:04:50.231][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ef9eda9e8faa68b5f4644b265e186796".
biodb.TRACE[2022-04-09 08:04:50.237][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:04:50.238][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef9eda9e8faa68b5f4644b265e186796.content".
biodb.DEBUG[2022-04-09 08:04:50.241][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:50.241][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:50.242][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:50.243][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:50.244][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:50.245][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:50.245][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:50.246][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.249][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.252][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:50.255][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:50.256][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:50.256][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:50.258][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:50.258][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:50.259][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:50.260][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:50.260][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.263][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.266][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:50.269][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:50.270][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:50.270][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:50.272][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:50.272][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:50.273][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:50.274][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:50.274][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.277][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.280][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:50.283][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:04:50.284][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:50.285][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:50.286][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:50.287][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:50.287][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:50.288][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:50.289][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:50.290][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.292][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.295][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:50.296][private$selectFields]
biodb.TRACE[2022-04-09 08:04:50.297][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:50.297][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:50.298][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:50.299][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.300][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.300][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.301][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.302][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.302][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.303][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.304][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.305][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:50.305][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:50.306][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.307][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.307][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.308][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.309][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:50.310][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.313][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.315][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.319][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2022-04-09 08:04:50.319][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:50.320][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:50.321][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:50.322][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:50.323][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:50.323][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:50.324][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:50.325][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.328][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.331][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:50.332][private$selectFields]
biodb.TRACE[2022-04-09 08:04:50.332][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:50.333][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:50.334][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:50.335][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.335][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.336][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.337][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.338][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.338][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.339][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.340][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.341][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:50.341][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:50.342][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.343][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.344][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.344][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.345][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:50.346][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.349][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.352][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.355][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2022-04-09 08:04:50.356][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:50.357][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:50.358][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:50.359][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:50.359][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:50.360][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:50.361][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:50.366][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.371][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.373][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:50.374][private$selectFields]
biodb.TRACE[2022-04-09 08:04:50.375][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:50.376][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:50.376][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:50.377][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.378][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.379][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.379][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.380][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.381][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.382][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.382][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.383][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:50.384][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:50.384][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.385][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.386][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.387][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.387][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:50.388][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.391][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.394][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.397][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2022-04-09 08:04:50.398][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:04:50.399][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:04:50.400][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:50.401][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:50.401][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:50.403][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:50.403][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:50.404][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:50.405][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:50.493][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:04:50.495][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:04:50.497][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f077e512e38828ca0970d6a9a2df40b1".
biodb.TRACE[2022-04-09 08:04:50.497][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:04:50.498][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f077e512e38828ca0970d6a9a2df40b1.content".
biodb.DEBUG[2022-04-09 08:04:50.500][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:50.501][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:50.502][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:50.503][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:50.504][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:50.505][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:50.505][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:50.506][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.509][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.512][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:50.515][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:50.516][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:50.516][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:50.518][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:50.518][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:50.519][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:50.520][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:50.520][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.523][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.526][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:50.529][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:50.530][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:50.530][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:50.532][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:50.532][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:50.533][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:50.534][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:50.534][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.537][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.540][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:50.543][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:50.543][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:50.544][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:50.545][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:50.546][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:50.546][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:50.547][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:50.548][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.551][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.554][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:50.556][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:50.557][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:50.558][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:50.559][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:50.559][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:50.560][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:50.561][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:50.562][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.564][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.567][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:50.570][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:50.571][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:50.572][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:50.573][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:50.573][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:50.574][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:50.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:50.576][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.578][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.581][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:50.584][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:50.585][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:50.586][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:50.587][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:50.588][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:50.588][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:50.589][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:50.590][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.593][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.596][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:50.600][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:04:50.602][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:04:50.603][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1f74ce81a905644d346321032fe47e5f".
biodb.TRACE[2022-04-09 08:04:50.604][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:04:50.605][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1f74ce81a905644d346321032fe47e5f.content".
biodb.DEBUG[2022-04-09 08:04:50.607][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:50.607][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:50.608][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:50.609][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:50.610][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:50.611][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:50.611][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:50.612][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.615][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.623][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:50.627][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:50.627][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:50.628][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:50.629][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:50.630][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:50.631][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:50.631][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:50.632][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.635][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.638][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:50.642][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:04:50.644][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:04:50.645][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d7672f179ff5d0339b4462dafc99279b".
biodb.TRACE[2022-04-09 08:04:50.645][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:04:50.647][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d7672f179ff5d0339b4462dafc99279b.content".
biodb.DEBUG[2022-04-09 08:04:50.650][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:50.651][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:50.651][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:50.653][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:50.653][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:50.654][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:50.654][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:50.655][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.658][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.661][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:50.664][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:50.664][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:50.665][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:50.666][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:50.667][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:50.667][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:50.668][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:50.669][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.672][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.674][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:50.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:50.677][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:04:50.679][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:50.679][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:50.680][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:50.681][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:50.682][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:50.682][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:50.683][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:50.684][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.687][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.689][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:50.690][private$selectFields]
biodb.TRACE[2022-04-09 08:04:50.691][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:50.692][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:50.692][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:50.693][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.694][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.694][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.695][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.696][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.697][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.697][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.698][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.699][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:50.699][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:50.700][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.701][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.702][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.702][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.703][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:50.704][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.707][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.709][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.713][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2022-04-09 08:04:50.713][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:50.714][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:50.715][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:50.716][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:50.717][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:50.717][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:50.718][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:50.719][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.722][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.725][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:50.725][private$selectFields]
biodb.TRACE[2022-04-09 08:04:50.726][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:50.727][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:50.727][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:50.728][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.729][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.730][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.730][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.731][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.732][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.733][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.733][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.734][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:50.735][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:50.735][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.736][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.737][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.738][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.738][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:50.739][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.742][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.750][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.754][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2022-04-09 08:04:50.755][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:50.756][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:50.756][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:50.758][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:50.758][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:50.759][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:50.759][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:50.760][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.763][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.766][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:50.767][private$selectFields]
biodb.TRACE[2022-04-09 08:04:50.767][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:50.768][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:50.769][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:50.770][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.770][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.771][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.772][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.772][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.773][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.774][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.775][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.775][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:50.776][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:50.777][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.778][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.778][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.779][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.780][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:50.780][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.783][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.786][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:50.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:50.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:50.789][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3017].
biodb.DEBUG[2022-04-09 08:04:50.790][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:04:50.791][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:04:50.805][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:50.806][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:50.807][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:50.808][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:50.809][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:50.809][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:50.810][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:50.899][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:04:50.901][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:04:50.902][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:04:50.903][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-04-09 08:04:51.401][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7*&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-04-09 08:04:51.984][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:04:51.998][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/735359865bd435e9a652b6491588c177.content"
biodb.TRACE[2022-04-09 08:04:52.018][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/735359865bd435e9a652b6491588c177.request"
biodb.DEBUG[2022-04-09 08:04:52.026][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:52.027][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:52.027][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:52.029][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:52.030][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:52.030][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:52.031][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:52.032][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:52.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:52.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:52.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:52.035][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:52.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:52.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:52.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:52.038][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:52.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:52.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:52.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:52.041][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:52.041][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:52.042][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:52.043][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:52.044][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:52.045][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:52.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:52.046][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:52.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:52.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:52.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:52.049][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:52.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:52.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:52.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:52.052][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:52.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:52.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:52.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:52.055][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:52.056][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:52.057][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:52.058][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:52.058][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:52.059][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:52.060][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:52.061][private$loadEntries] Creating entries from ids [1]: "28243".
biodb.DEBUG[2022-04-09 08:04:52.061][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:04:52.063][cch$loadFileContent] Trying to load 1 files from cache: [1]: "28243".
biodb.TRACE[2022-04-09 08:04:52.064][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:04:52.065][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:04:52.065][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:04:52.066][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:04:52.067][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:04:52.068][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:04:52.070][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:52.071][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:52.071][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:52.073][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:52.073][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:52.074][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:52.075][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:52.076][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=28243".
biodb.DEBUG[2022-04-09 08:04:52.078][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:04:52.078][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:04:52.079][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=28243".
biodb.TRACE[2022-04-09 08:04:53.202][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=28243).
biodb.DEBUG[2022-04-09 08:04:53.666][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:04:53.681][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/177c3a227615d232b537605885883911.content"
biodb.TRACE[2022-04-09 08:04:53.712][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/177c3a227615d232b537605885883911.request"
biodb.TRACE[2022-04-09 08:04:53.732][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/28243.xml"
biodb.DEBUG[2022-04-09 08:04:53.739][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:04:53.755][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:04:53.756][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:04:53.758][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:53.758][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:53.759][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:53.760][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:53.761][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:53.762][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:53.762][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:53.764][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:53.765][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:53.766][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:53.766][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:53.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:53.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:53.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:53.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:53.776][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:53.777][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:53.778][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:53.778][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:53.780][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:53.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:53.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:53.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:53.789][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:53.789][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:53.790][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:53.791][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:53.792][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:53.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:53.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:53.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:53.801][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:53.802][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:53.803][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:53.804][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:53.805][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:53.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:53.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:53.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:53.814][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:53.815][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:53.815][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:53.816][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:53.817][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:53.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:53.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:53.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:53.833][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:53.833][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:53.834][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:53.835][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:53.836][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:53.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:53.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:53.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:53.845][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:53.846][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:53.846][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:53.847][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:53.848][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:53.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:53.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:53.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:53.857][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:53.858][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:53.858][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:53.859][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:53.860][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:53.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:53.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:53.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:53.869][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:53.870][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:53.870][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:53.871][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:53.872][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:53.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:53.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:53.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:53.881][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:53.882][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:53.882][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:53.883][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:53.884][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:53.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:53.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:53.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:53.893][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:53.894][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:53.894][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:53.895][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:53.896][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:53.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:53.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:53.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:53.905][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:53.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:53.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:53.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:53.908][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:53.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:53.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:53.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:53.911][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:53.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:53.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:53.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:53.914][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:53.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:53.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:53.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:53.917][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:53.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:53.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:53.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:53.920][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:53.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:53.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:53.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:53.923][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:53.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:53.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:53.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:53.933][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:53.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:53.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:53.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:53.936][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:53.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:53.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:53.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:53.939][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:53.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:53.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:53.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:53.942][self$createEntryFromContent] Accession numbers: 28243.
biodb.TRACE[2022-04-09 08:04:53.943][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:53.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:53.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:53.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:53.951][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:53.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:53.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:53.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:53.955][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:53.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:53.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:53.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:53.958][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:53.959][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:53.959][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:53.961][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:53.961][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:53.962][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:53.963][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:53.963][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:53.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:53.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:53.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:53.966][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:53.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:53.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:53.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:53.969][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:53.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:53.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:53.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:53.972][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:53.973][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:53.974][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:53.975][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:53.976][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:53.976][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:53.977][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:53.978][private$loadEntries] Creating entries from ids [1]: "70786".
biodb.DEBUG[2022-04-09 08:04:53.978][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:04:53.980][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70786".
biodb.TRACE[2022-04-09 08:04:53.981][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:04:53.981][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:04:53.982][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:04:53.983][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:04:53.984][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:04:53.984][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:04:53.986][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:53.987][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:53.988][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:53.989][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:53.990][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:53.990][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:53.991][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:53.992][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70786".
biodb.DEBUG[2022-04-09 08:04:53.994][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:04:53.995][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:04:53.996][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70786".
biodb.TRACE[2022-04-09 08:04:54.430][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70786).
biodb.DEBUG[2022-04-09 08:04:54.900][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:04:54.913][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ea24f2a708fc4a90f6eff28b49d993c4.content"
biodb.TRACE[2022-04-09 08:04:54.933][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ea24f2a708fc4a90f6eff28b49d993c4.request"
biodb.TRACE[2022-04-09 08:04:54.953][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70786.xml"
biodb.DEBUG[2022-04-09 08:04:54.960][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:04:54.977][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:04:54.978][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:04:54.979][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:54.980][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:54.981][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:54.982][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:54.983][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:54.984][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:54.984][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:54.991][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:54.992][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:54.993][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:54.994][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:54.995][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:54.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:54.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:54.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:55.005][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:55.005][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:55.006][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:55.007][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:55.008][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:55.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:55.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:55.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:55.017][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:55.017][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:55.018][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:55.019][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:55.020][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:55.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:55.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:55.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:55.028][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:55.029][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:55.030][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:55.031][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:55.031][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:55.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:55.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:55.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:55.040][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:55.041][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:55.042][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:55.042][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:55.043][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:55.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:55.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:55.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:55.052][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:55.053][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:55.053][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:55.054][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:55.055][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:55.056][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:55.056][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:55.057][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:55.058][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:55.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:55.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:55.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:55.067][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:55.068][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:55.068][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:55.069][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:55.070][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:55.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:55.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:55.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:55.079][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:55.080][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:55.081][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:55.081][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:55.082][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:55.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:55.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:55.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:55.092][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:55.093][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:55.093][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:55.094][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:55.095][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:55.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:55.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:55.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:55.104][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:55.105][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:55.106][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:55.106][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:55.107][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:55.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:55.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:55.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:55.123][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:55.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:55.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:55.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:55.126][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:55.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:55.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:55.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:55.129][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:55.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:55.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:55.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:55.131][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:55.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:55.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:55.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:55.134][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:55.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:55.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:55.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:55.137][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:55.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:55.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:55.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:55.140][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:55.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:55.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:55.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:55.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:55.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:55.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:55.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:55.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:55.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:55.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:55.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:55.155][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:55.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:55.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:55.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:55.158][self$createEntryFromContent] Accession numbers: 70786.
biodb.TRACE[2022-04-09 08:04:55.158][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:55.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:55.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:55.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:55.161][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:55.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:55.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:55.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:55.164][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:55.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:55.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:55.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:55.167][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:55.168][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:55.168][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:55.170][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:55.170][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:55.171][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:55.172][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:55.173][private$loadEntries] Creating entries from ids [1]: "78144".
biodb.DEBUG[2022-04-09 08:04:55.173][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:04:55.174][cch$loadFileContent] Trying to load 1 files from cache: [1]: "78144".
biodb.TRACE[2022-04-09 08:04:55.175][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:04:55.176][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:04:55.177][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:04:55.178][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:04:55.178][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:04:55.179][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:04:55.181][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:55.182][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:55.182][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:55.184][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:55.184][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:55.185][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:55.186][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:55.187][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78144".
biodb.DEBUG[2022-04-09 08:04:55.189][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:04:55.189][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:04:55.190][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78144".
biodb.TRACE[2022-04-09 08:04:55.626][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78144).
biodb.DEBUG[2022-04-09 08:04:56.129][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:04:56.143][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ede5a640bd42c7611e16282ef185b74.content"
biodb.TRACE[2022-04-09 08:04:56.163][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ede5a640bd42c7611e16282ef185b74.request"
biodb.TRACE[2022-04-09 08:04:56.183][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78144.xml"
biodb.DEBUG[2022-04-09 08:04:56.199][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:04:56.215][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:04:56.216][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:04:56.217][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:56.218][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:56.218][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:56.220][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:56.220][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:56.221][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:56.222][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:56.223][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:56.224][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:56.225][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.226][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.226][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:56.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:56.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.235][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:56.236][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:56.237][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.237][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.238][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:56.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:56.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.247][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:56.248][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:56.248][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.249][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.250][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:56.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:56.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.258][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:56.259][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:56.260][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.261][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.261][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:56.262][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:56.263][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.264][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.264][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:56.265][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:56.266][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.267][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.267][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:56.268][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:56.269][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.270][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.271][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:56.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:56.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.279][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:56.280][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:56.281][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.282][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.283][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:56.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:56.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.292][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:56.293][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:56.293][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.294][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.295][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:56.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:56.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.304][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:56.305][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:56.305][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.306][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.307][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:56.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:56.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.322][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:56.323][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:56.324][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.325][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.325][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:56.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:56.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.334][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:56.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:56.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.337][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:56.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:56.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.340][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:56.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:56.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.343][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:56.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:56.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.345][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:56.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:56.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.348][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:56.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:56.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.351][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:56.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:56.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.360][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:56.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:56.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.363][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:56.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:56.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:56.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:56.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:56.368][self$createEntryFromContent] Accession numbers: 78144.
biodb.TRACE[2022-04-09 08:04:56.369][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:56.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:56.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.372][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:56.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:56.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.375][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:56.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:56.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:56.378][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:04:56.379][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:56.380][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:56.380][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:56.382][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:56.382][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:56.383][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:56.383][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:56.384][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:56.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:56.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.387][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:56.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:56.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.390][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:56.391][private$selectFields]
biodb.TRACE[2022-04-09 08:04:56.391][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:56.392][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:56.393][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:56.393][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:56.394][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:56.395][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.396][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.396][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:56.397][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:56.398][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.398][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.399][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:56.400][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:56.401][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:56.401][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:56.402][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.403][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.404][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:56.404][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:56.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:56.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.407][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:56.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:56.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.410][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:56.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:56.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.414][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-04-09 08:04:56.414][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:56.415][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:56.416][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:56.417][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:56.418][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:56.418][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:56.419][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:56.420][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:56.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:56.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.423][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:56.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:56.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.426][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:56.427][private$selectFields]
biodb.TRACE[2022-04-09 08:04:56.427][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:56.428][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:56.429][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:56.429][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:56.430][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:56.431][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.439][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.440][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:56.441][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:56.442][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.443][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.444][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:56.445][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:56.446][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:56.446][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:56.447][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.448][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.449][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:56.449][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:56.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:56.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.452][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:56.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:56.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.455][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:56.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:56.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.458][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [28243].
biodb.DEBUG[2022-04-09 08:04:56.459][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:56.460][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:56.460][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:56.462][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:56.462][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:56.463][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:56.464][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:56.464][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:56.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:56.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.467][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:56.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:56.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.470][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:56.471][private$selectFields]
biodb.TRACE[2022-04-09 08:04:56.471][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:56.472][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:56.473][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:56.474][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:56.474][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:56.475][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.476][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.476][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:56.477][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:56.478][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.478][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.479][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:56.480][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:56.481][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:56.481][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:56.482][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.483][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.483][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:56.484][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:56.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:56.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.487][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:56.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:56.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.490][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:56.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:56.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.493][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [78144].
biodb.DEBUG[2022-04-09 08:04:56.493][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:04:56.494][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:04:56.496][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:56.496][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:56.497][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:56.498][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:56.499][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:56.499][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:56.500][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:56.588][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:04:56.590][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:04:56.591][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:04:56.592][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-04-09 08:04:57.030][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6*&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-04-09 08:04:57.597][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:04:57.610][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8a541f1b4956cd259c40c32da3263881.content"
biodb.TRACE[2022-04-09 08:04:57.630][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8a541f1b4956cd259c40c32da3263881.request"
biodb.DEBUG[2022-04-09 08:04:57.639][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:57.640][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:57.640][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:57.642][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:57.642][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:57.643][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:57.644][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:57.645][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:57.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:57.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:57.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:57.647][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:57.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:57.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:57.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:57.650][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:57.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:57.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:57.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:57.653][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:57.654][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:57.654][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:57.656][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:57.656][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:57.657][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:57.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:57.658][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:57.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:57.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:57.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:57.661][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:57.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:57.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:57.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:57.664][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:57.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:57.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:57.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:57.667][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:57.668][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:57.669][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:57.670][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:57.670][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:57.671][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:57.672][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:57.673][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:57.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:57.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:57.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:57.676][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:57.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:57.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:57.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:57.679][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:57.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:57.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:57.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:57.682][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:04:57.683][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:57.684][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:57.685][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:57.686][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:57.686][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:57.687][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:57.688][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:57.689][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:57.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:57.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:57.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:57.692][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:57.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:57.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:57.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:57.695][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:57.695][private$selectFields]
biodb.TRACE[2022-04-09 08:04:57.696][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:57.697][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:57.698][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:57.698][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:57.699][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:57.700][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:57.700][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:57.701][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:57.707][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:57.708][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:57.709][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:57.710][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:57.711][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:57.712][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:57.713][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:57.714][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:57.715][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:57.716][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:57.716][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:57.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:57.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:57.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:57.719][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:57.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:57.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:57.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:57.722][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:57.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:57.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:57.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:57.725][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2022-04-09 08:04:57.726][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:57.727][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:57.728][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:57.729][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:57.729][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:57.730][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:57.731][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:57.732][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:57.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:57.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:57.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:57.735][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:57.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:57.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:57.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:57.737][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:57.738][private$selectFields]
biodb.TRACE[2022-04-09 08:04:57.739][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:57.739][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:57.740][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:57.741][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:57.742][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:57.742][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:57.743][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:57.744][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:57.744][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:57.745][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:57.746][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:57.747][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:57.747][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:57.748][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:57.749][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:57.749][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:57.750][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:57.751][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:57.751][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:57.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:57.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:57.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:57.754][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:57.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:57.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:57.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:57.757][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:57.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:57.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:57.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:57.760][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2022-04-09 08:04:57.761][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:57.761][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:57.762][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:57.763][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:57.764][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:57.765][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:57.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:57.766][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:57.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:57.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:57.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:57.769][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:57.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:57.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:57.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:57.772][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:57.772][private$selectFields]
biodb.TRACE[2022-04-09 08:04:57.773][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:57.774][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:57.774][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:57.775][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:57.776][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:57.776][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:57.777][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:57.778][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:57.779][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:57.779][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:57.780][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:57.781][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:57.781][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:57.782][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:57.783][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:57.783][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:57.784][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:57.785][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:57.786][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:57.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:57.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:57.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:57.788][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:57.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:57.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:57.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:57.791][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:57.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:57.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:57.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:57.794][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2022-04-09 08:04:57.795][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:04:57.796][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:04:57.797][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:57.798][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:57.799][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:57.800][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:57.801][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:57.801][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:57.802][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:57.890][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:04:57.892][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:04:57.893][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:04:57.894][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-04-09 08:04:58.614][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-04-09 08:04:59.370][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:04:59.384][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2ea9078bc4e1650d61bca0cacdbcb041.content"
biodb.TRACE[2022-04-09 08:04:59.404][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2ea9078bc4e1650d61bca0cacdbcb041.request"
biodb.DEBUG[2022-04-09 08:04:59.413][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:59.413][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:59.414][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:59.416][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:59.416][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:59.417][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:59.418][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:59.419][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.422][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.425][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:59.428][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:59.428][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:59.429][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:59.430][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:59.431][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:59.432][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:59.432][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:59.433][private$loadEntries] Creating entries from ids [1]: "47739".
biodb.DEBUG[2022-04-09 08:04:59.434][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:04:59.435][cch$loadFileContent] Trying to load 1 files from cache: [1]: "47739".
biodb.TRACE[2022-04-09 08:04:59.436][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:04:59.437][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:04:59.438][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:04:59.439][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:04:59.439][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:04:59.440][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:04:59.442][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:59.450][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:59.451][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:59.452][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:59.453][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:59.454][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:59.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:59.456][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=47739".
biodb.DEBUG[2022-04-09 08:04:59.458][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:04:59.459][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:04:59.460][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=47739".
biodb.TRACE[2022-04-09 08:04:59.898][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=47739).
biodb.DEBUG[2022-04-09 08:05:00.358][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:05:00.381][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0dc9c92acc9df5971b3177a6daad90f3.content"
biodb.TRACE[2022-04-09 08:05:00.401][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0dc9c92acc9df5971b3177a6daad90f3.request"
biodb.TRACE[2022-04-09 08:05:00.420][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/47739.xml"
biodb.DEBUG[2022-04-09 08:05:00.427][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:05:00.442][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:00.443][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:00.444][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:00.445][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:00.446][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:00.447][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:00.448][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:00.448][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:00.449][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:00.451][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:00.451][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:00.452][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.453][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.454][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:00.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:00.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.463][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:00.464][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:00.464][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.465][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.466][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:00.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:00.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.475][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:00.476][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:00.476][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.477][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.478][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:00.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:00.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.492][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:00.493][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:00.494][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.495][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.496][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:00.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:00.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.504][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:00.505][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:00.506][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.506][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.507][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:00.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:00.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.516][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:00.517][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:00.517][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.518][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.519][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:00.519][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:00.520][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.521][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.522][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:00.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:00.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.530][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:00.531][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:00.531][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.532][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.533][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:00.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:00.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.541][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:00.542][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:00.543][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.543][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.544][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:00.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:00.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.553][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:00.554][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:00.554][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.555][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.556][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:00.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:00.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.564][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:00.565][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:00.566][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.566][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.567][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:00.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:00.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.576][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.579][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.582][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:00.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:00.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.585][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.588][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:00.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:00.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:00.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:00.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.593][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:00.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:00.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.602][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:00.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:00.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.610][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:00.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:00.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.613][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:00.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:00.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:00.616][self$createEntryFromContent] Accession numbers: 47739.
biodb.TRACE[2022-04-09 08:05:00.617][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:00.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:00.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.620][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:00.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:00.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.623][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:00.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:00.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:00.626][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:00.626][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:00.627][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:00.628][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:00.629][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:00.629][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:00.630][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:00.631][private$loadEntries] Creating entries from ids [1]: "51744".
biodb.DEBUG[2022-04-09 08:05:00.631][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:00.633][cch$loadFileContent] Trying to load 1 files from cache: [1]: "51744".
biodb.TRACE[2022-04-09 08:05:00.634][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:05:00.634][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:05:00.635][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:00.636][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:05:00.636][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:05:00.637][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:05:00.639][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:00.640][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:00.640][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:00.642][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:00.642][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:00.643][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:00.643][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:00.644][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51744".
biodb.DEBUG[2022-04-09 08:05:00.646][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:05:00.647][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:05:00.648][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51744".
biodb.TRACE[2022-04-09 08:05:01.085][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51744).
biodb.DEBUG[2022-04-09 08:05:01.568][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:05:01.581][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/34d89a621633962f5a6b9b09f1ef84ed.content"
biodb.TRACE[2022-04-09 08:05:01.601][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/34d89a621633962f5a6b9b09f1ef84ed.request"
biodb.TRACE[2022-04-09 08:05:01.620][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51744.xml"
biodb.DEBUG[2022-04-09 08:05:01.627][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:05:01.643][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:01.644][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:01.645][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:01.646][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:01.647][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:01.648][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:01.649][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:01.649][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:01.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:01.652][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:01.653][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:01.653][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:01.654][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:01.655][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:01.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:01.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:01.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:01.669][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:01.670][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:01.671][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:01.672][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:01.673][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:01.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:01.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:01.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:01.681][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:01.682][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:01.682][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:01.683][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:01.684][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:01.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:01.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:01.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:01.692][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:01.693][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:01.694][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:01.694][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:01.695][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:01.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:01.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:01.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:01.704][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:01.704][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:01.705][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:01.706][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:01.707][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:01.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:01.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:01.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:01.715][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:01.716][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:01.717][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:01.717][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:01.718][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:01.719][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:01.719][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:01.720][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:01.721][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:01.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:01.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:01.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:01.729][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:01.730][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:01.731][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:01.732][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:01.732][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:01.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:01.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:01.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:01.741][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:01.742][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:01.742][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:01.743][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:01.744][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:01.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:01.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:01.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:01.753][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:01.754][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:01.754][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:01.755][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:01.756][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:01.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:01.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:01.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:01.765][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:01.766][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:01.766][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:01.767][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:01.768][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:01.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:01.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:01.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:01.781][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:01.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:01.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:01.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:01.784][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:01.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:01.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:01.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:01.787][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:01.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:01.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:01.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:01.790][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:01.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:01.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:01.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:01.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:01.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:01.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:01.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:01.796][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:01.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:01.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:01.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:01.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:01.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:01.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:01.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:01.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:01.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:01.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:01.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:01.810][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:01.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:01.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:01.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:01.813][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:01.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:01.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:01.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:01.815][self$createEntryFromContent] Accession numbers: 51744.
biodb.TRACE[2022-04-09 08:05:01.816][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:01.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:01.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:01.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:01.819][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:01.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:01.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:01.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:01.822][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:01.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:01.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:01.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:01.825][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:01.825][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:01.826][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:01.827][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:01.828][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:01.828][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:01.829][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:01.830][private$loadEntries] Creating entries from ids [1]: "64473".
biodb.DEBUG[2022-04-09 08:05:01.831][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:01.832][cch$loadFileContent] Trying to load 1 files from cache: [1]: "64473".
biodb.TRACE[2022-04-09 08:05:01.833][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:05:01.833][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:05:01.834][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:01.835][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:05:01.836][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:05:01.836][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:05:01.838][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:01.839][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:01.839][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:01.841][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:01.841][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:01.842][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:01.843][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:01.844][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64473".
biodb.DEBUG[2022-04-09 08:05:01.845][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:05:01.846][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:05:01.847][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64473".
biodb.TRACE[2022-04-09 08:05:02.299][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64473).
biodb.DEBUG[2022-04-09 08:05:02.828][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:05:02.842][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0bc75e6e381d0b772364b3d17c4c0f5e.content"
biodb.TRACE[2022-04-09 08:05:02.863][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0bc75e6e381d0b772364b3d17c4c0f5e.request"
biodb.TRACE[2022-04-09 08:05:02.884][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64473.xml"
biodb.DEBUG[2022-04-09 08:05:02.899][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:05:02.918][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:02.919][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:02.920][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:02.921][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:02.922][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:02.923][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:02.924][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:02.924][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:02.925][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:02.927][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:02.928][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:02.929][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:02.929][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:02.930][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:02.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:02.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:02.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:02.940][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:02.940][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:02.941][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:02.942][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:02.943][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:02.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:02.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:02.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:02.952][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:02.953][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:02.953][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:02.954][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:02.955][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:02.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:02.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:02.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:02.964][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:02.965][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:02.965][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:02.966][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:02.967][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:02.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:02.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:02.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:02.976][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:02.977][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:02.978][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:02.978][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:02.979][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:02.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:02.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:02.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:02.989][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:02.990][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:02.990][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:02.991][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:02.992][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:02.993][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:02.994][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:02.994][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:02.995][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:02.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:02.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:02.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:03.005][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:03.006][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:03.006][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:03.007][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:03.008][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:03.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:03.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:03.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:03.018][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:03.018][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:03.019][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:03.025][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:03.027][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:03.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:03.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:03.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:03.038][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:03.038][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:03.039][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:03.040][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:03.041][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:03.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:03.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:03.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:03.050][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:03.051][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:03.051][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:03.052][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:03.053][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:03.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:03.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:03.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:03.062][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:03.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:03.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:03.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:03.065][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:03.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:03.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:03.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:03.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:03.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:03.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:03.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:03.071][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:03.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:03.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:03.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:03.074][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:03.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:03.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:03.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:03.077][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:03.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:03.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:03.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:03.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:03.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:03.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:03.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:03.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:03.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:03.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:03.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:03.091][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:03.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:03.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:03.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:03.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:03.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:03.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:03.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:03.097][self$createEntryFromContent] Accession numbers: 64473.
biodb.TRACE[2022-04-09 08:05:03.098][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:03.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:03.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:03.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:03.101][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:03.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:03.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:03.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:03.104][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:03.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:03.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:03.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:03.107][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:03.108][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:03.108][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:03.110][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:03.110][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:03.111][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:03.112][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:03.113][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:03.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:03.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:03.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:03.116][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:03.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:03.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:03.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:03.119][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:03.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:03.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:03.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:03.122][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:03.122][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:03.123][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:03.124][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:03.125][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:03.126][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:03.127][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:03.127][private$loadEntries] Creating entries from ids [1]: "75244".
biodb.DEBUG[2022-04-09 08:05:03.128][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:03.130][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75244".
biodb.TRACE[2022-04-09 08:05:03.131][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:05:03.131][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:05:03.132][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:03.133][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:05:03.134][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:05:03.135][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:05:03.137][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:03.137][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:03.138][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:03.139][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:03.140][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:03.141][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:03.141][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:03.142][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75244".
biodb.DEBUG[2022-04-09 08:05:03.145][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:05:03.145][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:05:03.146][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75244".
biodb.TRACE[2022-04-09 08:05:03.611][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75244).
biodb.DEBUG[2022-04-09 08:05:04.106][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:05:04.121][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cae81bf9939177869251c540dee6df85.content"
biodb.TRACE[2022-04-09 08:05:04.153][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cae81bf9939177869251c540dee6df85.request"
biodb.TRACE[2022-04-09 08:05:04.173][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75244.xml"
biodb.DEBUG[2022-04-09 08:05:04.180][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:05:04.197][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:04.198][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:04.199][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:04.200][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:04.201][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:04.202][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:04.203][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:04.203][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:04.204][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:04.206][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:04.206][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:04.207][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:04.208][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:04.209][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:04.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:04.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:04.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:04.219][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:04.219][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:04.220][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:04.221][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:04.222][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:04.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:04.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:04.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:04.232][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:04.232][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:04.233][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:04.234][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:04.235][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:04.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:04.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:04.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:04.244][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:04.245][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:04.246][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:04.247][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:04.248][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:04.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:04.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:04.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:04.265][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:04.265][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:04.266][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:04.267][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:04.268][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:04.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:04.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:04.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:04.277][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:04.278][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:04.279][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:04.279][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:04.280][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:04.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:04.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:04.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:04.289][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:04.290][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:04.291][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:04.291][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:04.292][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:04.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:04.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:04.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:04.301][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:04.302][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:04.303][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:04.303][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:04.304][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:04.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:04.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:04.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:04.313][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:04.314][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:04.314][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:04.315][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:04.316][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:04.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:04.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:04.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:04.325][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:04.325][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:04.326][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:04.327][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:04.328][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:04.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:04.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:04.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:04.337][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:04.337][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:04.338][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:04.339][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:04.340][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:04.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:04.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:04.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:04.349][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:04.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:04.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:04.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:04.352][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:04.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:04.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:04.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:04.355][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:04.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:04.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:04.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:04.358][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:04.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:04.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:04.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:04.361][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:04.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:04.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:04.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:04.364][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:04.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:04.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:04.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:04.367][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:04.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:04.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:04.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:04.382][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:04.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:04.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:04.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:04.386][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:04.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:04.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:04.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:04.390][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:04.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:04.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:04.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:04.393][self$createEntryFromContent] Accession numbers: 75244.
biodb.TRACE[2022-04-09 08:05:04.394][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:04.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:04.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:04.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:04.397][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:04.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:04.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:04.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:04.399][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:04.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:04.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:04.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:04.402][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:04.403][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:04.404][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:04.405][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:04.406][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:04.406][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:04.407][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:04.408][private$loadEntries] Creating entries from ids [1]: "75311".
biodb.DEBUG[2022-04-09 08:05:04.409][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:04.410][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75311".
biodb.TRACE[2022-04-09 08:05:04.411][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:05:04.412][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:05:04.412][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:04.413][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:05:04.414][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:05:04.415][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:05:04.417][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:04.417][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:04.418][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:04.419][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:04.420][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:04.420][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:04.421][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:04.422][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75311".
biodb.DEBUG[2022-04-09 08:05:04.424][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:05:04.425][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:05:04.426][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75311".
biodb.TRACE[2022-04-09 08:05:05.146][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75311).
biodb.DEBUG[2022-04-09 08:05:05.622][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:05:05.636][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4e5c0f0d646c796bdaff17cc90a3658d.content"
biodb.TRACE[2022-04-09 08:05:05.656][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4e5c0f0d646c796bdaff17cc90a3658d.request"
biodb.TRACE[2022-04-09 08:05:05.675][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75311.xml"
biodb.DEBUG[2022-04-09 08:05:05.682][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:05:05.699][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:05.700][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:05.702][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:05.702][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:05.703][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:05.705][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:05.705][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:05.706][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:05.897][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:05.899][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:05.900][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:05.901][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.902][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:05.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:05.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.912][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:05.913][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:05.914][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.914][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.915][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:05.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:05.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.924][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:05.925][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:05.925][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.926][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.927][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:05.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:05.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.936][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:05.936][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:05.937][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.938][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.939][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:05.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:05.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.947][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:05.948][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:05.948][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.949][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.950][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:05.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:05.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.959][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:05.959][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:05.960][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.961][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.962][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:05.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:05.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.970][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:05.971][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:05.972][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.972][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.973][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:05.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:05.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.982][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:05.983][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:05.983][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.984][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.985][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:05.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:05.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.994][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:05.995][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:05.996][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.997][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.998][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:05.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:05.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.006][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:06.007][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:06.008][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.008][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.009][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:06.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:06.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.022][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:06.023][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:06.023][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.024][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.025][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:06.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:06.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.033][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:06.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:06.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.036][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:06.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:06.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:06.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:06.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.042][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:06.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:06.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.045][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:06.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:06.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:06.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:06.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:06.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:06.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.059][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:06.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:06.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.062][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:06.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:06.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.065][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:06.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:06.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:06.068][self$createEntryFromContent] Accession numbers: 75311.
biodb.TRACE[2022-04-09 08:05:06.069][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:06.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:06.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.071][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:06.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:06.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.074][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:06.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:06.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:06.077][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:06.078][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:06.078][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:06.080][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:06.081][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:06.081][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:06.082][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:06.083][private$loadEntries] Creating entries from ids [1]: "75350".
biodb.DEBUG[2022-04-09 08:05:06.083][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:06.085][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75350".
biodb.TRACE[2022-04-09 08:05:06.086][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:05:06.086][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:05:06.087][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:06.088][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:05:06.089][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:05:06.089][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:05:06.091][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:06.092][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:06.093][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:06.094][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:06.095][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:06.095][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:06.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:06.097][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75350".
biodb.DEBUG[2022-04-09 08:05:06.099][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:05:06.100][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:05:06.101][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75350".
biodb.TRACE[2022-04-09 08:05:06.543][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75350).
biodb.DEBUG[2022-04-09 08:05:07.050][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:05:07.064][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37625fe42e340de84bdcc226ef73c285.content"
biodb.TRACE[2022-04-09 08:05:07.084][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37625fe42e340de84bdcc226ef73c285.request"
biodb.TRACE[2022-04-09 08:05:07.105][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75350.xml"
biodb.DEBUG[2022-04-09 08:05:07.118][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:05:07.133][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:07.134][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:07.135][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:07.136][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:07.137][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:07.138][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:07.139][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:07.139][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:07.140][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:07.141][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:07.142][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:07.143][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.144][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:07.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:07.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.153][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:07.154][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:07.154][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.155][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.156][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:07.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:07.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.165][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:07.165][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:07.166][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.167][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.168][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:07.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:07.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.176][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:07.177][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:07.178][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.179][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.179][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:07.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:07.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.188][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:07.189][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:07.190][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.190][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.191][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:07.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:07.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.200][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:07.201][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:07.201][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.202][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.203][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:07.204][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:07.204][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.205][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.206][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:07.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:07.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.215][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:07.216][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:07.216][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.217][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.218][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:07.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:07.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.227][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:07.227][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:07.228][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.229][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.234][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:07.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:07.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.242][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:07.243][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:07.244][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.245][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.245][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:07.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:07.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.254][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:07.255][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:07.255][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.256][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.257][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:07.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:07.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.266][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:07.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:07.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.269][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:07.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:07.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.271][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:07.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:07.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.274][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:07.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:07.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.277][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:07.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:07.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.280][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:07.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:07.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:07.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:07.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.291][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:07.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:07.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:07.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:07.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.296][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:07.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:07.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:07.299][self$createEntryFromContent] Accession numbers: 75350.
biodb.TRACE[2022-04-09 08:05:07.300][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:07.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:07.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.303][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:07.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:07.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.305][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:07.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:07.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:07.308][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:07.309][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:07.309][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:07.311][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:07.311][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:07.312][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:07.313][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:07.314][private$loadEntries] Creating entries from ids [1]: "87236".
biodb.DEBUG[2022-04-09 08:05:07.314][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:07.315][cch$loadFileContent] Trying to load 1 files from cache: [1]: "87236".
biodb.TRACE[2022-04-09 08:05:07.316][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:05:07.317][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:05:07.318][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:07.319][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:05:07.319][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:05:07.320][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:05:07.322][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:07.323][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:07.323][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:07.325][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:07.325][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:07.326][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:07.327][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:07.327][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=87236".
biodb.DEBUG[2022-04-09 08:05:07.329][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:05:07.330][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:05:07.331][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=87236".
biodb.TRACE[2022-04-09 08:05:07.771][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=87236).
biodb.DEBUG[2022-04-09 08:05:08.234][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:05:08.248][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/668dc6e1fe28fb2b9645ffb56917cb44.content"
biodb.TRACE[2022-04-09 08:05:08.269][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/668dc6e1fe28fb2b9645ffb56917cb44.request"
biodb.TRACE[2022-04-09 08:05:08.296][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/87236.xml"
biodb.DEBUG[2022-04-09 08:05:08.303][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:05:08.319][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:08.320][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:08.322][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:08.322][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:08.323][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:08.324][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:08.325][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:08.326][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:08.326][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:08.328][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:08.329][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:08.329][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.330][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.331][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:08.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:08.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.340][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:08.341][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:08.341][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.342][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.343][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:08.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:08.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.352][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:08.352][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:08.353][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.354][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.355][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:08.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:08.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.364][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:08.364][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:08.365][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.366][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.367][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:08.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:08.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.376][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:08.377][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:08.378][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.378][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.379][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:08.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:08.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.388][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:08.389][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:08.390][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.391][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.392][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:08.392][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:08.393][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.394][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.395][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:08.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:08.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.408][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:08.409][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:08.409][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.410][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.411][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:08.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:08.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.420][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:08.421][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:08.421][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.422][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.423][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:08.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:08.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.432][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:08.433][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:08.433][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.434][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.435][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:08.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:08.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.443][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:08.444][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:08.445][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.446][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.446][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:08.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:08.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.455][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:08.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:08.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.458][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:08.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:08.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.461][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:08.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:08.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.464][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:08.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:08.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.467][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:08.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:08.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.469][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:08.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:08.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.472][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:08.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:08.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:08.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:08.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.484][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:08.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:08.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.487][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:08.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:08.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:08.490][self$createEntryFromContent] Accession numbers: 87236.
biodb.TRACE[2022-04-09 08:05:08.491][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:08.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:08.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.494][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:08.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:08.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.497][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:08.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:08.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:08.500][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:08.500][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:08.501][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:08.502][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:08.503][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:08.504][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:08.504][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:08.505][private$loadEntries] Creating entries from ids [1]: "132193".
biodb.DEBUG[2022-04-09 08:05:08.506][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:08.507][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132193".
biodb.TRACE[2022-04-09 08:05:08.508][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:05:08.509][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:05:08.510][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:08.511][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:05:08.511][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:05:08.512][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:05:08.514][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:08.515][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:08.516][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:08.517][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:08.518][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:08.518][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:08.519][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:08.520][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132193".
biodb.DEBUG[2022-04-09 08:05:08.526][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:05:08.527][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:05:08.528][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132193".
biodb.TRACE[2022-04-09 08:05:08.966][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132193).
biodb.DEBUG[2022-04-09 08:05:09.432][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:05:09.454][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/485d54e768e8b3a26016a2841d39a83c.content"
biodb.TRACE[2022-04-09 08:05:09.475][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/485d54e768e8b3a26016a2841d39a83c.request"
biodb.TRACE[2022-04-09 08:05:09.495][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132193.xml"
biodb.DEBUG[2022-04-09 08:05:09.502][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:05:09.518][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:09.519][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:09.520][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:09.521][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:09.522][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:09.523][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:09.524][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:09.524][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:09.525][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:09.527][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:09.528][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:09.528][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:09.529][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:09.530][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:09.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:09.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:09.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:09.539][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:09.540][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:09.540][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:09.541][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:09.542][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:09.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:09.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:09.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:09.551][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:09.552][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:09.553][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:09.554][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:09.555][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:09.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:09.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:09.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:09.564][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:09.564][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:09.565][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:09.566][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:09.567][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:09.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:09.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:09.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:09.580][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:09.581][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:09.581][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:09.582][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:09.583][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:09.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:09.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:09.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:09.592][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:09.592][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:09.593][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:09.594][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:09.595][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:09.596][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:09.596][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:09.597][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:09.598][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:09.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:09.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:09.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:09.607][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:09.607][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:09.608][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:09.609][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:09.610][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:09.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:09.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:09.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:09.618][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:09.619][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:09.620][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:09.620][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:09.621][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:09.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:09.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:09.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:09.630][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:09.631][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:09.631][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:09.632][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:09.633][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:09.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:09.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:09.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:09.641][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:09.642][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:09.643][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:09.644][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:09.644][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:09.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:09.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:09.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:09.653][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:09.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:09.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:09.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:09.656][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:09.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:09.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:09.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:09.659][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:09.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:09.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:09.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:09.662][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:09.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:09.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:09.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:09.665][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:09.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:09.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:09.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:09.668][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:09.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:09.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:09.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:09.671][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:09.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:09.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:09.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:09.680][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:09.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:09.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:09.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:09.683][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:09.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:09.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:09.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:09.686][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:09.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:09.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:09.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:09.689][self$createEntryFromContent] Accession numbers: 132193.
biodb.TRACE[2022-04-09 08:05:09.690][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:09.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:09.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:09.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:09.693][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:09.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:09.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:09.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:09.699][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:09.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:09.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:09.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:09.702][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:09.703][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:09.703][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:09.705][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:09.705][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:09.706][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:09.707][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:09.707][private$loadEntries] Creating entries from ids [1]: "146002".
biodb.DEBUG[2022-04-09 08:05:09.708][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:09.709][cch$loadFileContent] Trying to load 1 files from cache: [1]: "146002".
biodb.TRACE[2022-04-09 08:05:09.710][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:05:09.711][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:05:09.712][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:09.712][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:05:09.713][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:05:09.714][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:05:09.716][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:09.716][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:09.717][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:09.718][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:09.719][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:09.720][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:09.720][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:09.721][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=146002".
biodb.DEBUG[2022-04-09 08:05:09.723][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:05:09.724][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:05:09.725][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=146002".
biodb.TRACE[2022-04-09 08:05:10.161][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=146002).
biodb.DEBUG[2022-04-09 08:05:10.630][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:05:10.644][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f6f6aad2df3f38cd332b2e82fd62eca2.content"
biodb.TRACE[2022-04-09 08:05:10.663][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f6f6aad2df3f38cd332b2e82fd62eca2.request"
biodb.TRACE[2022-04-09 08:05:10.683][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/146002.xml"
biodb.DEBUG[2022-04-09 08:05:10.689][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:05:10.705][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:10.706][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:10.708][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:10.708][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:10.709][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:10.710][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:10.711][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:10.712][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:10.712][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:10.714][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:10.715][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:10.716][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:10.716][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:10.717][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:10.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:10.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:10.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:10.726][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:10.727][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:10.728][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:10.728][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:10.729][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:10.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:10.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:10.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:10.742][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:10.743][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:10.743][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:10.744][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:10.745][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:10.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:10.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:10.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:10.753][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:10.754][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:10.755][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:10.755][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:10.756][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:10.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:10.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:10.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:10.765][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:10.766][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:10.766][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:10.767][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:10.768][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:10.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:10.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:10.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:10.776][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:10.777][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:10.778][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:10.779][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:10.779][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:10.780][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:10.781][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:10.782][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:10.782][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:10.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:10.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:10.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:10.791][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:10.792][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:10.792][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:10.793][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:10.794][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:10.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:10.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:10.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:10.802][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:10.803][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:10.804][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:10.805][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:10.806][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:10.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:10.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:10.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:10.814][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:10.815][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:10.816][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:10.816][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:10.817][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:10.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:10.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:10.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:10.826][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:10.827][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:10.828][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:10.828][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:10.829][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:10.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:10.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:10.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:10.838][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:10.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:10.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:10.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:10.841][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:10.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:10.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:10.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:10.844][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:10.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:10.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:10.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:10.847][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:10.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:10.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:10.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:10.850][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:10.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:10.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:10.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:10.853][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:10.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:10.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:10.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:10.859][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:10.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:10.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:10.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:10.868][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:10.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:10.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:10.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:10.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:10.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:10.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:10.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:10.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:10.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:10.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:10.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:10.876][self$createEntryFromContent] Accession numbers: 146002.
biodb.TRACE[2022-04-09 08:05:10.877][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:10.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:10.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:10.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:10.880][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:10.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:10.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:10.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:10.883][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:10.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:10.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:10.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:10.885][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:10.886][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:10.887][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:10.888][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:10.889][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:10.889][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:10.890][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:10.891][private$loadEntries] Creating entries from ids [1]: "65641".
biodb.DEBUG[2022-04-09 08:05:10.891][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:10.892][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65641".
biodb.TRACE[2022-04-09 08:05:10.893][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:05:10.894][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:05:10.895][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:10.896][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:05:10.896][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:05:10.897][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:05:10.899][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:10.900][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:10.900][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:10.901][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:10.902][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:10.903][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:10.903][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:10.904][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65641".
biodb.DEBUG[2022-04-09 08:05:10.906][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:05:10.907][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:05:10.908][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65641".
biodb.TRACE[2022-04-09 08:05:11.385][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65641).
biodb.DEBUG[2022-04-09 08:05:11.922][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:05:11.935][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cb3af00d6d6a96efc61a93d5105272fc.content"
biodb.TRACE[2022-04-09 08:05:11.954][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cb3af00d6d6a96efc61a93d5105272fc.request"
biodb.TRACE[2022-04-09 08:05:11.974][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65641.xml"
biodb.DEBUG[2022-04-09 08:05:11.981][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:05:11.998][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:11.998][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:12.005][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:12.006][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:12.007][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:12.008][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:12.009][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:12.009][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:12.010][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:12.011][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:12.012][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:12.013][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.014][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.014][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:12.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:12.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.023][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:12.024][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:12.024][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.025][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.026][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:12.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:12.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.034][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:12.035][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:12.036][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.036][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.037][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:12.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:12.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.046][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:12.047][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:12.047][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.048][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.049][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:12.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:12.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.057][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:12.058][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:12.059][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.059][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.060][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:12.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:12.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.068][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:12.069][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:12.070][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.071][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.071][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:12.072][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:12.073][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.074][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.074][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:12.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:12.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.083][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:12.084][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:12.084][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.085][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.086][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:12.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:12.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.095][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:12.095][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:12.096][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.097][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.098][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:12.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:12.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.107][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:12.107][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:12.108][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.109][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.110][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:12.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:12.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.119][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:12.119][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:12.124][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.124][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.125][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:12.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:12.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.134][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:12.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:12.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.136][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:12.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:12.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.139][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:12.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:12.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.142][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:12.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:12.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:12.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:12.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.147][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:12.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:12.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.150][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:12.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:12.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:12.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:12.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.161][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:12.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:12.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.164][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:12.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:12.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:12.167][self$createEntryFromContent] Accession numbers: 65641.
biodb.TRACE[2022-04-09 08:05:12.167][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:12.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:12.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.170][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:12.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:12.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.173][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:12.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:12.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:12.175][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:12.176][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:12.177][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:12.178][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:12.178][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:12.179][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:12.180][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:12.180][private$loadEntries] Creating entries from ids [1]: "144071".
biodb.DEBUG[2022-04-09 08:05:12.181][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:12.182][cch$loadFileContent] Trying to load 1 files from cache: [1]: "144071".
biodb.TRACE[2022-04-09 08:05:12.183][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:05:12.184][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:05:12.184][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:12.185][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:05:12.186][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:05:12.187][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:05:12.189][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:12.189][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:12.190][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:12.191][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:12.192][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:12.192][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:12.193][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:12.194][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=144071".
biodb.DEBUG[2022-04-09 08:05:12.196][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:05:12.196][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:05:12.197][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=144071".
biodb.TRACE[2022-04-09 08:05:12.633][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=144071).
biodb.DEBUG[2022-04-09 08:05:13.104][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:05:13.117][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/147c6b10a8e09e725fbbb250103f039d.content"
biodb.TRACE[2022-04-09 08:05:13.137][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/147c6b10a8e09e725fbbb250103f039d.request"
biodb.TRACE[2022-04-09 08:05:13.161][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/144071.xml"
biodb.DEBUG[2022-04-09 08:05:13.169][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:05:13.184][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:13.185][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:13.186][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:13.186][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:13.187][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:13.188][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:13.189][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:13.190][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:13.190][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:13.192][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:13.192][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:13.193][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.194][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.195][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:13.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:13.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.203][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:13.204][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:13.204][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.205][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.206][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:13.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:13.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.215][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:13.215][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:13.216][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.217][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.218][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:13.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:13.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.226][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:13.227][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:13.228][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.228][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.229][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:13.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:13.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.238][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:13.239][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:13.239][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.240][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.241][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:13.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:13.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.249][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:13.250][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:13.251][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.252][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.252][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:13.253][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.254][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.255][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.255][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:13.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.264][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:13.265][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:13.266][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.266][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.267][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:13.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:13.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.280][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:13.280][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:13.281][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.282][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.283][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:13.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:13.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.291][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:13.292][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:13.292][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.293][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.294][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:13.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:13.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.302][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:13.303][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:13.304][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.304][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.305][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:13.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:13.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.314][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:13.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:13.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.316][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:13.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:13.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.319][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:13.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:13.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.322][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:13.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:13.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:13.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:13.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.327][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:13.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:13.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:13.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:13.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:13.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:13.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:13.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:13.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.344][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:13.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:13.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:13.347][self$createEntryFromContent] Accession numbers: 144071.
biodb.TRACE[2022-04-09 08:05:13.348][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.351][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.353][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:13.356][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:13.357][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:13.357][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:13.359][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:13.359][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:13.360][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:13.361][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:13.361][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.364][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.367][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:13.370][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:13.371][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:13.371][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:13.373][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:13.373][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:13.374][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:13.375][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:13.375][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.378][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.381][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:13.384][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:13.385][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:13.385][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:13.387][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:13.387][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:13.388][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:13.389][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:13.389][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.392][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.401][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:13.404][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:13.404][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:13.405][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:13.406][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:13.407][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:13.407][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:13.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:13.409][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.411][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.414][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:13.417][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:13.417][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:13.418][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:13.419][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:13.420][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:13.420][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:13.421][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:13.422][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.425][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.427][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:13.430][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:13.431][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:13.431][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:13.433][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:13.433][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:13.434][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:13.434][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:13.435][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.438][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.441][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:13.443][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:13.444][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:13.445][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:13.446][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:13.446][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:13.447][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:13.448][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:13.448][private$loadEntries] Creating entries from ids [1]: "168650".
biodb.DEBUG[2022-04-09 08:05:13.449][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:13.450][cch$loadFileContent] Trying to load 1 files from cache: [1]: "168650".
biodb.TRACE[2022-04-09 08:05:13.451][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:05:13.452][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:05:13.453][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:13.453][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:05:13.454][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:05:13.455][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:05:13.457][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:13.457][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:13.458][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:13.459][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:13.460][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:13.460][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:13.461][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:13.462][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=168650".
biodb.DEBUG[2022-04-09 08:05:13.464][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:05:13.464][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:05:13.465][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=168650".
biodb.TRACE[2022-04-09 08:05:13.902][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=168650).
biodb.DEBUG[2022-04-09 08:05:14.382][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:05:14.395][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fbd7acd341e86313aeb547b3d6d3201b.content"
biodb.TRACE[2022-04-09 08:05:14.416][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fbd7acd341e86313aeb547b3d6d3201b.request"
biodb.TRACE[2022-04-09 08:05:14.436][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/168650.xml"
biodb.DEBUG[2022-04-09 08:05:14.443][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:05:14.467][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:14.468][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:14.469][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:14.470][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:14.471][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:14.472][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:14.473][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:14.473][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:14.474][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:14.476][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:14.477][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:14.477][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.478][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.479][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:14.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:14.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.488][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:14.489][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:14.489][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.490][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.491][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:14.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:14.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.500][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:14.501][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:14.501][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.502][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.503][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:14.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:14.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.512][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:14.512][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:14.513][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.514][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.515][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:14.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:14.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.523][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:14.524][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:14.525][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.525][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.526][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:14.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:14.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.535][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:14.536][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:14.537][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.537][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.538][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:14.539][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:14.540][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.540][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.541][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:14.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:14.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.550][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.551][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.552][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.553][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.553][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.563][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:14.563][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:14.564][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.565][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.566][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:14.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:14.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.575][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:14.581][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:14.581][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.582][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.583][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:14.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:14.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.592][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:14.593][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:14.594][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.594][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.595][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:14.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:14.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.604][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:14.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:14.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.607][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:14.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:14.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.610][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:14.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:14.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.613][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:14.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:14.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.616][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:14.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:14.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.619][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:14.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:14.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.622][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:14.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:14.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.630][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:14.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:14.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.633][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:14.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:14.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.636][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:14.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:14.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:14.639][self$createEntryFromContent] Accession numbers: 168650.
biodb.TRACE[2022-04-09 08:05:14.640][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:14.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:14.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.643][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:14.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:14.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.645][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:14.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:14.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:14.648][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:14.649][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:14.650][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:14.651][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:14.652][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:14.652][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:14.653][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:14.654][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:14.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:14.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.657][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:14.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:14.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.660][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:14.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:14.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:14.663][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:14.663][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:14.664][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:14.665][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:14.666][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:14.666][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:14.667][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:14.668][private$loadEntries] Creating entries from ids [1]: "169305".
biodb.DEBUG[2022-04-09 08:05:14.669][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:14.670][cch$loadFileContent] Trying to load 1 files from cache: [1]: "169305".
biodb.TRACE[2022-04-09 08:05:14.671][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:05:14.672][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:05:14.673][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:14.673][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:05:14.674][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:05:14.675][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:05:14.677][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:14.678][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:14.678][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:14.680][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:14.680][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:14.681][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:14.682][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:14.683][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169305".
biodb.DEBUG[2022-04-09 08:05:14.685][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:05:14.685][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:05:14.687][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169305".
biodb.TRACE[2022-04-09 08:05:15.223][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169305).
biodb.DEBUG[2022-04-09 08:05:15.691][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:05:15.705][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5eab934e4cfb5514f373385a6170c282.content"
biodb.TRACE[2022-04-09 08:05:15.735][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5eab934e4cfb5514f373385a6170c282.request"
biodb.TRACE[2022-04-09 08:05:15.754][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169305.xml"
biodb.DEBUG[2022-04-09 08:05:15.761][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:05:15.777][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:15.778][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:15.779][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:15.780][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:15.780][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:15.782][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:15.782][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:15.783][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:15.784][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:15.785][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:15.786][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:15.787][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.788][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.789][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:15.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:15.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.797][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:15.798][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:15.799][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.799][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.800][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:15.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:15.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.809][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:15.810][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:15.811][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.811][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.812][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:15.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:15.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.821][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:15.822][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:15.823][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.823][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.824][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:15.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:15.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.834][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:15.834][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:15.835][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.836][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.837][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:15.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:15.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.846][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:15.847][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:15.847][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.848][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.853][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:15.854][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:15.855][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.856][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.857][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:15.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:15.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.865][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:15.866][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:15.867][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.867][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.868][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:15.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:15.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.877][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:15.878][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:15.878][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.879][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.880][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:15.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:15.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.889][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:15.889][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:15.890][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.891][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.891][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:15.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:15.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.900][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:15.901][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:15.901][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.902][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.903][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:15.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:15.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.912][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:15.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:15.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.914][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:15.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:15.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.917][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:15.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:15.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.920][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:15.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:15.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.923][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:15.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:15.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.926][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:15.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:15.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.929][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:15.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:15.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.938][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:15.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:15.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:15.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:15.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.943][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:15.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:15.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:15.946][self$createEntryFromContent] Accession numbers: 169305.
biodb.TRACE[2022-04-09 08:05:15.947][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:15.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:15.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.950][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:15.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:15.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.953][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:15.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:15.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:15.956][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:15.957][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:15.958][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:15.959][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:15.960][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:15.960][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:15.961][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:15.962][private$loadEntries] Creating entries from ids [1]: "176869".
biodb.DEBUG[2022-04-09 08:05:15.963][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:15.964][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176869".
biodb.TRACE[2022-04-09 08:05:15.965][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:05:15.965][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:05:15.966][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:15.967][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:05:15.968][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:05:15.968][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:05:15.971][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:15.971][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:15.972][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:15.978][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:15.978][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:15.979][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:15.980][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:15.981][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176869".
biodb.DEBUG[2022-04-09 08:05:15.983][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:05:15.983][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:05:15.984][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176869".
biodb.TRACE[2022-04-09 08:05:16.583][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176869).
biodb.DEBUG[2022-04-09 08:05:17.112][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:05:17.134][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2c477fa42863c662724815d047e8c32.content"
biodb.TRACE[2022-04-09 08:05:17.154][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2c477fa42863c662724815d047e8c32.request"
biodb.TRACE[2022-04-09 08:05:17.174][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176869.xml"
biodb.DEBUG[2022-04-09 08:05:17.180][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:05:17.196][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:17.197][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:17.199][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:17.199][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:17.200][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:17.201][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:17.202][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:17.203][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:17.203][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:17.205][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:17.206][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:17.207][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.207][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.208][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:17.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:17.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.217][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:17.218][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:17.219][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.220][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.221][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:17.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:17.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.230][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:17.231][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:17.231][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.232][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.233][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:17.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:17.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.243][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:17.243][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:17.244][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.249][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.251][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:17.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:17.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.260][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:17.260][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:17.261][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.262][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.263][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:17.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:17.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.271][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:17.272][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:17.273][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.274][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.274][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:17.275][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:17.276][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.277][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.277][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:17.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:17.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.286][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:17.287][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:17.288][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.288][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.289][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:17.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:17.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.298][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:17.299][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:17.299][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.300][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.301][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:17.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:17.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.310][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:17.310][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:17.311][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.312][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.313][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:17.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:17.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.321][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:17.322][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:17.323][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.323][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.324][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:17.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:17.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.333][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:17.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:17.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.336][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:17.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:17.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:17.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:17.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.342][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:17.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:17.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.345][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:17.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:17.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.348][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:17.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:17.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.351][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:17.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:17.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.359][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:17.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:17.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.362][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:17.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:17.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:17.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:17.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:17.372][self$createEntryFromContent] Accession numbers: 176869.
biodb.TRACE[2022-04-09 08:05:17.373][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:17.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:17.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.376][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:17.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:17.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.379][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:17.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:17.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:17.381][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:17.382][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:17.383][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:17.384][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:17.385][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:17.385][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:17.386][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:17.386][private$loadEntries] Creating entries from ids [1]: "185696".
biodb.DEBUG[2022-04-09 08:05:17.387][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:17.388][cch$loadFileContent] Trying to load 1 files from cache: [1]: "185696".
biodb.TRACE[2022-04-09 08:05:17.389][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:05:17.390][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:05:17.391][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:17.392][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:05:17.392][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:05:17.393][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:05:17.395][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:17.395][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:17.396][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:17.397][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:17.398][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:17.399][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:17.399][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:17.400][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=185696".
biodb.DEBUG[2022-04-09 08:05:17.402][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:05:17.402][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:05:17.404][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=185696".
biodb.TRACE[2022-04-09 08:05:17.879][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=185696).
biodb.DEBUG[2022-04-09 08:05:18.467][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:05:18.481][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/030ac759c83231dbd7b7d6c83788888c.content"
biodb.TRACE[2022-04-09 08:05:18.500][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/030ac759c83231dbd7b7d6c83788888c.request"
biodb.TRACE[2022-04-09 08:05:18.519][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/185696.xml"
biodb.DEBUG[2022-04-09 08:05:18.526][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:05:18.542][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:18.543][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:18.545][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:18.545][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:18.546][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:18.547][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:18.548][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:18.549][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:18.549][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:18.551][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:18.552][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:18.553][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.553][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.554][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:18.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:18.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.568][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:18.569][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:18.570][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.570][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.571][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:18.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:18.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.580][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:18.580][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:18.581][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.582][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.583][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:18.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:18.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.591][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:18.592][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:18.593][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.593][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.594][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:18.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:18.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.603][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:18.604][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:18.604][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.605][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.606][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:18.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:18.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.614][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:18.615][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:18.616][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.616][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.617][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:18.618][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:18.618][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.619][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.620][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:18.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:18.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.628][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:18.629][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:18.630][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.630][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.631][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:18.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:18.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.640][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:18.640][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:18.641][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.642][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.643][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:18.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:18.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.651][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:18.652][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:18.653][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.653][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.654][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:18.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:18.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.663][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:18.664][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:18.665][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.665][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.666][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:18.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:18.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.675][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.678][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.681][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:18.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:18.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.687][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.690][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:18.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:18.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.693][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:18.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:18.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:18.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:18.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.704][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:18.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:18.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:18.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:18.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.710][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:18.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:18.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:18.713][self$createEntryFromContent] Accession numbers: 185696.
biodb.TRACE[2022-04-09 08:05:18.714][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:18.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:18.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.716][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:18.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:18.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.719][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:18.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:18.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:18.722][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:18.723][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:18.723][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:18.725][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:18.725][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:18.726][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:18.726][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:18.727][private$loadEntries] Creating entries from ids [1]: "190762".
biodb.DEBUG[2022-04-09 08:05:18.728][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:18.729][cch$loadFileContent] Trying to load 1 files from cache: [1]: "190762".
biodb.TRACE[2022-04-09 08:05:18.730][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:05:18.731][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:05:18.731][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:18.732][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:05:18.733][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:05:18.734][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:05:18.736][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:18.736][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:18.737][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:18.738][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:18.739][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:18.739][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:18.740][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:18.741][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=190762".
biodb.DEBUG[2022-04-09 08:05:18.743][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:05:18.743][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:05:18.744][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=190762".
biodb.TRACE[2022-04-09 08:05:19.275][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=190762).
biodb.DEBUG[2022-04-09 08:05:19.769][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:05:19.783][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fa9da4de7d7dc0d4458ab1ff7bbbbda0.content"
biodb.TRACE[2022-04-09 08:05:19.809][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fa9da4de7d7dc0d4458ab1ff7bbbbda0.request"
biodb.TRACE[2022-04-09 08:05:19.830][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/190762.xml"
biodb.DEBUG[2022-04-09 08:05:19.837][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:05:19.862][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:19.864][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:19.865][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:19.866][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:19.866][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:19.868][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:19.868][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:19.869][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:19.870][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:19.872][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:19.873][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:19.873][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.874][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:19.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:19.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.886][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:19.886][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:19.887][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.888][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.889][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:19.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:19.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.898][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:19.899][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:19.900][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.901][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.902][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:19.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:19.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.911][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:19.911][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:19.912][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.913][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.914][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:19.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:19.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.923][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:19.924][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:19.925][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.925][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.926][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:19.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:19.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.935][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:19.936][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:19.937][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.938][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.939][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:19.939][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:19.940][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.941][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.942][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:19.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:19.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.951][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:19.952][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:19.953][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.953][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.954][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:19.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:19.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.964][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:19.965][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:19.966][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.966][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.967][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:19.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:19.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.977][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:19.978][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:19.978][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.979][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.980][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:19.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:19.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.994][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:19.995][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:19.996][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.996][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.997][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:19.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:19.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.006][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.009][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.012][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:20.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:20.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.015][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.017][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:20.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:20.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.020][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:20.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:20.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.023][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:20.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:20.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.032][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:20.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:20.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.035][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:20.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:20.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.037][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:20.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:20.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:20.040][self$createEntryFromContent] Accession numbers: 190762.
biodb.TRACE[2022-04-09 08:05:20.041][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.044][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.046][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:20.050][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:20.052][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:20.053][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d7672f179ff5d0339b4462dafc99279b".
biodb.TRACE[2022-04-09 08:05:20.054][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:20.055][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d7672f179ff5d0339b4462dafc99279b.content".
biodb.DEBUG[2022-04-09 08:05:20.058][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:20.059][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:20.059][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:20.061][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:20.061][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:20.062][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:20.063][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:20.064][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.066][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.069][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:20.072][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:20.073][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:20.074][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:20.075][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:20.076][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:20.077][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:20.078][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:20.078][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:20.079][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.082][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.085][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:20.086][private$selectFields]
biodb.TRACE[2022-04-09 08:05:20.087][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:20.087][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:20.088][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:20.089][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.090][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.090][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.091][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.092][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.093][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.093][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.094][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.095][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:20.096][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:20.096][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.097][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.098][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.099][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.099][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:20.100][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.103][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.111][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.115][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2022-04-09 08:05:20.116][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:20.116][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:20.117][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:20.118][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:20.119][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:20.120][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:20.120][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:20.121][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.124][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.127][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:20.127][private$selectFields]
biodb.TRACE[2022-04-09 08:05:20.128][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:20.129][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:20.129][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:20.130][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.131][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.131][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.132][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.133][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.134][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.134][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.135][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.136][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:20.136][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:20.137][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.138][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.138][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.139][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.140][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:20.141][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.143][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.146][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.150][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2022-04-09 08:05:20.150][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:20.151][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:20.152][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:20.153][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:20.154][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:20.154][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:20.155][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:20.156][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.158][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.161][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:20.162][private$selectFields]
biodb.TRACE[2022-04-09 08:05:20.163][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:20.163][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:20.164][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:20.165][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.165][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.166][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.167][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.167][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.168][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.169][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.170][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.170][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:20.171][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:20.172][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.172][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.173][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.174][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.174][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:20.175][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.178][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.181][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.184][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2022-04-09 08:05:20.185][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:20.185][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:05:20.200][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:20.201][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:20.202][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:20.203][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:20.203][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:20.204][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:20.205][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:20.288][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:20.290][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:20.291][cch$loadFileContent] Trying to load 1 files from cache: [1]: "73049ee91ee5cceff4f3bc8a5644d766".
biodb.TRACE[2022-04-09 08:05:20.292][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:20.293][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/73049ee91ee5cceff4f3bc8a5644d766.content".
biodb.DEBUG[2022-04-09 08:05:20.296][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:20.297][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:20.297][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:20.298][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:20.299][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:20.300][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:20.300][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:20.301][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.304][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.307][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:20.310][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:20.310][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:20.311][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:20.312][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:20.313][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:20.314][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:20.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:20.315][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.318][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.321][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:20.324][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:20.325][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:20.325][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:20.326][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:20.327][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:20.328][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:20.328][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:20.329][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.332][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.335][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:20.338][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:20.339][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:20.339][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:20.341][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:20.341][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:20.342][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:20.343][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:20.344][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.347][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.355][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:20.358][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:20.359][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:20.360][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:20.360][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:20.362][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:20.362][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:20.363][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:20.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:20.365][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.367][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.370][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:20.371][private$selectFields]
biodb.TRACE[2022-04-09 08:05:20.372][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:20.373][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:20.373][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:20.374][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.375][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.375][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.376][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.377][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.378][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.378][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.379][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.380][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:20.381][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:20.381][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.382][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.383][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.383][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.384][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:20.385][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.388][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.391][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.394][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2022-04-09 08:05:20.394][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:20.395][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:20.396][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:20.397][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:20.397][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:20.398][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:20.399][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:20.399][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.402][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.405][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:20.406][private$selectFields]
biodb.TRACE[2022-04-09 08:05:20.406][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:20.407][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:20.408][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:20.409][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.409][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.410][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.411][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.411][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.412][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.413][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.413][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.414][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:20.415][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:20.415][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.416][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.417][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.418][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.418][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:20.419][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.422][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.425][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.428][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [8021].
biodb.DEBUG[2022-04-09 08:05:20.429][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:20.430][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:20.430][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:20.432][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:20.433][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:20.434][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:20.434][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:20.436][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.439][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.442][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:20.443][private$selectFields]
biodb.TRACE[2022-04-09 08:05:20.444][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:20.445][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:20.445][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:20.446][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.447][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.447][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.448][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.449][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.450][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.451][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.451][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.452][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:20.453][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:20.454][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.455][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.455][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.456][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.457][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:20.458][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.461][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.464][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.467][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [30382].
biodb.DEBUG[2022-04-09 08:05:20.468][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:20.469][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:05:20.471][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:20.471][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:20.472][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:20.473][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:20.474][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:20.475][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:20.475][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:20.558][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:20.561][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:20.561][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d19727a9ac34aca2de50a6f942f16ddf".
biodb.TRACE[2022-04-09 08:05:20.562][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:20.563][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d19727a9ac34aca2de50a6f942f16ddf.content".
biodb.DEBUG[2022-04-09 08:05:20.565][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:20.566][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:20.567][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:20.568][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:20.568][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:20.569][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:20.570][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:20.571][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.573][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.576][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:20.579][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:20.580][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:20.580][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:20.582][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:20.582][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:20.583][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:20.583][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:20.584][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.587][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.590][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:20.593][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:20.602][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:20.603][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:20.604][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:20.605][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:20.606][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:20.606][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:20.607][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.610][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.613][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:20.615][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:20.616][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:20.617][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:20.618][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:20.618][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:20.619][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:20.620][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:20.620][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.623][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.626][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:20.629][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:20.630][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:20.630][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:20.631][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:20.632][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:20.633][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:20.633][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:20.634][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.637][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.639][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:20.642][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:20.643][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:20.643][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:20.645][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:20.645][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:20.646][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:20.646][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:20.647][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.650][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.653][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:20.655][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:20.656][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:20.657][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:20.658][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:20.659][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:20.659][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:20.660][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:20.661][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.663][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.666][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:20.669][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:20.670][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:20.671][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:20.671][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:20.672][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:20.673][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:20.674][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:20.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:20.675][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.678][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.681][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:20.681][private$selectFields]
biodb.TRACE[2022-04-09 08:05:20.682][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:20.683][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:20.684][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:20.684][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.685][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.686][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.686][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.687][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.688][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.689][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.689][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.690][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:20.691][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:20.691][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.692][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.693][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.693][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.694][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:20.695][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.698][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.701][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.704][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65530].
biodb.DEBUG[2022-04-09 08:05:20.705][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:20.705][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:20.706][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:20.707][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:20.708][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:20.708][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:20.709][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:20.710][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.712][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.715][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:20.716][private$selectFields]
biodb.TRACE[2022-04-09 08:05:20.716][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:20.717][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:20.718][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:20.719][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.719][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.720][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.725][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.726][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.727][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.728][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.728][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.729][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:20.730][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:20.730][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.731][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.732][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.733][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.733][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:20.734][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.737][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.740][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.743][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [90204].
biodb.DEBUG[2022-04-09 08:05:20.743][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:20.744][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:20.745][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:20.746][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:20.747][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:20.747][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:20.748][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:20.749][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.751][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.754][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:20.755][private$selectFields]
biodb.TRACE[2022-04-09 08:05:20.756][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:20.756][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:20.757][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:20.758][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.758][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.759][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.760][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.761][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.761][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.762][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.763][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.763][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:20.764][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:20.765][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.765][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.766][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.767][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.767][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:20.768][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.771][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.774][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.777][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132793].
biodb.DEBUG[2022-04-09 08:05:20.777][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:20.778][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:05:20.779][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:20.780][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:20.781][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:20.782][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:20.782][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:20.783][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:20.784][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:20.870][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:20.872][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:20.873][cch$loadFileContent] Trying to load 1 files from cache: [1]: "bd904440f4fc2972890a98c52c563f7a".
biodb.TRACE[2022-04-09 08:05:20.874][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:20.875][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bd904440f4fc2972890a98c52c563f7a.content".
biodb.DEBUG[2022-04-09 08:05:20.877][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:20.878][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:20.878][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:20.879][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:20.880][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:20.881][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:20.881][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:20.882][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.885][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.888][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:20.892][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:20.894][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:20.895][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9a7be5ffc012df03c41d74610ef07a76".
biodb.TRACE[2022-04-09 08:05:20.896][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:20.896][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9a7be5ffc012df03c41d74610ef07a76.content".
biodb.DEBUG[2022-04-09 08:05:20.898][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:20.899][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:20.899][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:20.901][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:20.901][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:20.902][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:20.903][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:20.904][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.906][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.909][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:20.912][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:20.913][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:20.913][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:20.915][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:20.915][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:20.916][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:20.917][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:20.917][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.920][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.923][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:20.926][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:20.927][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:20.927][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:20.929][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:20.929][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:20.930][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:20.931][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:20.931][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.934][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.937][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:20.940][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:20.942][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:20.942][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:20.943][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:20.944][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:20.945][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:20.946][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:20.946][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:20.947][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.950][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.953][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:20.954][private$selectFields]
biodb.TRACE[2022-04-09 08:05:20.955][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:20.955][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:20.956][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:20.957][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.958][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.958][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.959][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.960][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.960][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.961][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.962][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.963][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:20.963][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:20.964][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.965][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.966][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.966][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.967][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:20.968][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.975][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.979][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.982][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51836].
biodb.DEBUG[2022-04-09 08:05:20.983][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:20.983][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:20.984][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:20.985][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:20.986][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:20.986][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:20.987][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:20.988][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.990][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.993][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:20.994][private$selectFields]
biodb.TRACE[2022-04-09 08:05:20.995][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:20.995][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:20.996][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:20.997][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.997][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.998][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.999][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.000][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.001][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.001][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.002][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.003][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:21.003][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:21.004][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.005][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.006][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.006][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.007][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:21.008][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.010][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.013][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.016][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51837].
biodb.DEBUG[2022-04-09 08:05:21.017][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:21.018][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:21.018][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:21.019][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:21.020][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:21.020][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:21.021][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:21.022][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.025][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.028][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:21.028][private$selectFields]
biodb.TRACE[2022-04-09 08:05:21.029][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:21.029][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:21.030][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:21.031][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.032][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.032][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.033][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.034][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.034][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.035][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.036][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.036][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:21.037][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:21.038][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.038][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.039][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.040][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.040][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:21.041][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.044][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.047][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.050][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132205].
biodb.DEBUG[2022-04-09 08:05:21.050][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:21.051][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:05:21.066][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:21.067][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:21.067][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:21.069][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:21.069][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:21.070][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:21.071][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:21.161][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:21.163][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:21.164][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1e3885f0c8b7bc081513880959401862".
biodb.TRACE[2022-04-09 08:05:21.165][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:21.166][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1e3885f0c8b7bc081513880959401862.content".
biodb.DEBUG[2022-04-09 08:05:21.169][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:21.171][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:21.172][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4b7e19492b2d1086a5dba1710a3b39b".
biodb.TRACE[2022-04-09 08:05:21.173][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:21.174][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f4b7e19492b2d1086a5dba1710a3b39b.content".
biodb.DEBUG[2022-04-09 08:05:21.176][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:21.177][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:21.177][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:21.179][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:21.180][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:21.181][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:21.181][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:21.182][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.185][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.189][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:21.192][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:21.194][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:21.195][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d57f841033be8ab371045edb0388ed60".
biodb.TRACE[2022-04-09 08:05:21.196][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:21.197][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d57f841033be8ab371045edb0388ed60.content".
biodb.DEBUG[2022-04-09 08:05:21.199][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:21.201][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:21.201][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:21.202][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:21.204][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:21.204][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:21.205][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:21.206][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:21.207][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.210][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.213][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:21.214][private$selectFields]
biodb.TRACE[2022-04-09 08:05:21.215][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:21.216][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:21.216][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:21.217][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.218][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.219][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.220][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.220][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.221][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.222][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.223][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.224][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:21.225][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:21.225][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.226][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.227][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.228][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.228][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:21.234][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.238][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.241][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.245][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-04-09 08:05:21.245][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:21.246][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:05:21.248][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:21.248][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:21.249][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:21.250][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:21.251][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:21.252][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:21.253][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:21.337][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:21.340][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:21.341][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3f1d442725dcc6ae0abe5c87cfaad307".
biodb.TRACE[2022-04-09 08:05:21.342][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:21.343][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3f1d442725dcc6ae0abe5c87cfaad307.content".
biodb.DEBUG[2022-04-09 08:05:21.345][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:21.346][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:21.347][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:21.348][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:21.349][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:21.350][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:21.350][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:21.351][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.354][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.357][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:21.366][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:21.367][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:21.367][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:21.369][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:21.370][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:21.370][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:21.371][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:21.372][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.375][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.378][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:21.381][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:21.383][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:21.384][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ef9eda9e8faa68b5f4644b265e186796".
biodb.TRACE[2022-04-09 08:05:21.385][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:21.386][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef9eda9e8faa68b5f4644b265e186796.content".
biodb.DEBUG[2022-04-09 08:05:21.388][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:21.389][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:21.390][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:21.391][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:21.392][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:21.393][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:21.393][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:21.394][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.397][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.400][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:21.403][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:21.404][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:21.404][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:21.406][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:21.406][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:21.407][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:21.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:21.408][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.411][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.414][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:21.417][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:21.418][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:21.419][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:21.420][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:21.421][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:21.421][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:21.422][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:21.423][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.426][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.429][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:21.432][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:21.433][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:21.434][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:21.434][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:21.436][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:21.436][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:21.437][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:21.438][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:21.439][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.442][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.445][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:21.445][private$selectFields]
biodb.TRACE[2022-04-09 08:05:21.446][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:21.447][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:21.447][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:21.448][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.449][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.450][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.450][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.451][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.452][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.453][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.454][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.454][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:21.455][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:21.456][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.457][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.457][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.458][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.459][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:21.460][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.463][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.466][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.469][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2022-04-09 08:05:21.470][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:21.471][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:21.472][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:21.473][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:21.474][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:21.475][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:21.475][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:21.476][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.479][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.483][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:21.484][private$selectFields]
biodb.TRACE[2022-04-09 08:05:21.484][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:21.485][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:21.486][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:21.487][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.488][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.489][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.489][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.490][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.491][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.492][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.493][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.494][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:21.494][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:21.500][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.502][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.503][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.503][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.504][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:21.505][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.508][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.511][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.515][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2022-04-09 08:05:21.516][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:21.516][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:21.517][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:21.519][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:21.519][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:21.520][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:21.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:21.522][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.525][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.528][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:21.529][private$selectFields]
biodb.TRACE[2022-04-09 08:05:21.529][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:21.530][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:21.531][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:21.532][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.533][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.533][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.534][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.535][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.536][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.537][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.537][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.538][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:21.539][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:21.540][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.541][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.541][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.542][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.543][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:21.544][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.547][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.550][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.558][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2022-04-09 08:05:21.559][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:21.559][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:05:21.561][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:21.562][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:21.562][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:21.564][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:21.565][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:21.566][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:21.566][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:21.664][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:21.666][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:21.667][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f077e512e38828ca0970d6a9a2df40b1".
biodb.TRACE[2022-04-09 08:05:21.668][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:21.669][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f077e512e38828ca0970d6a9a2df40b1.content".
biodb.DEBUG[2022-04-09 08:05:21.671][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:21.672][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:21.673][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:21.674][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:21.675][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:21.676][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:21.677][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:21.678][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.681][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.684][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:21.687][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:21.688][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:21.689][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:21.690][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:21.691][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:21.691][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:21.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:21.693][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.696][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.699][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:21.702][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:21.703][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:21.703][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:21.705][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:21.706][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:21.706][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:21.707][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:21.708][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.711][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.714][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:21.717][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:21.718][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:21.719][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:21.720][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:21.721][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:21.722][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:21.722][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:21.723][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.726][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.729][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:21.733][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:21.733][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:21.734][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:21.735][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:21.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:21.737][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:21.737][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:21.738][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.741][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.744][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:21.747][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:21.748][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:21.749][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:21.750][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:21.751][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:21.752][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:21.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:21.753][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.757][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.760][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:21.763][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:21.764][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:21.764][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:21.766][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:21.766][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:21.767][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:21.768][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:21.769][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.772][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.775][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:21.785][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:21.787][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:21.788][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1f74ce81a905644d346321032fe47e5f".
biodb.TRACE[2022-04-09 08:05:21.789][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:21.790][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1f74ce81a905644d346321032fe47e5f.content".
biodb.DEBUG[2022-04-09 08:05:21.792][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:21.792][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:21.793][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:21.794][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:21.795][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:21.796][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:21.796][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:21.797][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.800][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.803][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:21.806][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:21.807][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:21.808][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:21.809][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:21.810][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:21.810][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:21.811][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:21.812][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.815][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.818][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:21.821][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:21.823][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:21.824][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d7672f179ff5d0339b4462dafc99279b".
biodb.TRACE[2022-04-09 08:05:21.825][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:21.826][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d7672f179ff5d0339b4462dafc99279b.content".
biodb.DEBUG[2022-04-09 08:05:21.830][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:21.831][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:21.831][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:21.833][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:21.833][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:21.834][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:21.835][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:21.835][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.838][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.841][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:21.844][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:21.845][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:21.845][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:21.847][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:21.847][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:21.848][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:21.849][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:21.849][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.852][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.855][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:21.858][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:21.859][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:21.860][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:21.861][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:21.862][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:21.863][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:21.863][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:21.864][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:21.865][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.868][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.871][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:21.872][private$selectFields]
biodb.TRACE[2022-04-09 08:05:21.873][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:21.874][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:21.874][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:21.875][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.876][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.877][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.877][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.878][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.879][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.880][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.880][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.881][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:21.882][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:21.883][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.884][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.884][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.885][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.886][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:21.887][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.890][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.893][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.896][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2022-04-09 08:05:21.897][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:21.898][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:21.899][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:21.900][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:21.901][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:21.902][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:21.902][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:21.903][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.906][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.910][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:21.915][private$selectFields]
biodb.TRACE[2022-04-09 08:05:21.917][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:21.918][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:21.919][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:21.919][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.920][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.921][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.922][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.923][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.923][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.924][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.925][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.926][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:21.926][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:21.927][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.928][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.929][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.929][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.930][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:21.931][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.934][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.937][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.940][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2022-04-09 08:05:21.941][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:21.942][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:21.942][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:21.944][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:21.945][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:21.945][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:21.946][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:21.947][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.950][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.953][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:21.953][private$selectFields]
biodb.TRACE[2022-04-09 08:05:21.954][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:21.955][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:21.955][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:21.956][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.957][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.958][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.958][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.959][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.960][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.961][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.962][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.962][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:21.963][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:21.964][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.964][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.965][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.966][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.967][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:21.967][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.970][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.973][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.976][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3017].
biodb.DEBUG[2022-04-09 08:05:21.977][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:21.978][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:05:21.994][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:21.995][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:21.996][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:21.997][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:21.998][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:21.998][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:21.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:22.094][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:22.096][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:22.097][cch$loadFileContent] Trying to load 1 files from cache: [1]: "735359865bd435e9a652b6491588c177".
biodb.TRACE[2022-04-09 08:05:22.098][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:22.099][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/735359865bd435e9a652b6491588c177.content".
biodb.DEBUG[2022-04-09 08:05:22.102][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:22.102][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:22.103][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:22.104][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:22.105][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:22.106][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:22.106][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:22.107][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.110][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.113][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:22.116][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:22.117][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:22.118][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:22.119][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:22.120][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:22.120][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:22.121][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:22.122][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.125][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.128][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:22.131][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:22.132][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:22.132][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:22.134][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:22.134][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:22.135][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:22.135][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:22.136][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.139][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.142][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:22.145][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:22.146][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:22.147][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:22.148][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:22.149][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:22.149][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:22.150][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:22.151][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.154][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.157][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:22.160][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:22.161][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:22.161][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:22.163][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:22.163][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:22.164][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:22.165][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:22.166][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.169][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.172][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:22.180][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:22.181][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:22.181][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:22.183][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:22.183][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:22.184][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:22.185][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:22.186][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.189][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.191][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:22.194][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:22.196][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:22.196][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:22.197][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:22.198][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:22.199][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:22.199][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:22.200][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:22.201][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.204][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.207][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:22.207][private$selectFields]
biodb.TRACE[2022-04-09 08:05:22.208][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:22.209][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:22.209][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:22.210][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.211][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.212][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.212][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.213][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.214][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.214][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.215][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.216][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:22.217][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:22.217][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.218][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.219][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.219][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.220][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:22.221][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.224][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.227][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.230][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-04-09 08:05:22.230][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:22.231][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:22.232][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:22.233][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:22.234][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:22.234][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:22.235][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:22.236][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.239][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.242][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:22.242][private$selectFields]
biodb.TRACE[2022-04-09 08:05:22.243][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:22.244][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:22.244][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:22.245][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.246][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.247][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.247][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.248][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.249][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.249][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.250][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.251][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:22.252][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:22.252][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.253][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.254][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.254][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.255][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:22.256][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.259][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.262][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.265][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [28243].
biodb.DEBUG[2022-04-09 08:05:22.266][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:22.267][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:22.267][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:22.269][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:22.269][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:22.270][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:22.271][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:22.272][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.275][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.278][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:22.278][private$selectFields]
biodb.TRACE[2022-04-09 08:05:22.279][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:22.280][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:22.281][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:22.281][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.282][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.283][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.284][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.284][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.285][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.286][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.287][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.287][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:22.288][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:22.289][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.290][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.290][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.291][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.292][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:22.293][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.296][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.299][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.302][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [78144].
biodb.DEBUG[2022-04-09 08:05:22.308][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:22.309][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:05:22.310][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:22.311][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:22.312][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:22.313][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:22.314][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:22.314][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:22.315][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:22.397][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:22.399][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:22.401][cch$loadFileContent] Trying to load 1 files from cache: [1]: "8a541f1b4956cd259c40c32da3263881".
biodb.TRACE[2022-04-09 08:05:22.402][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:22.403][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8a541f1b4956cd259c40c32da3263881.content".
biodb.DEBUG[2022-04-09 08:05:22.406][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:22.407][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:22.407][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:22.409][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:22.410][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:22.410][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:22.411][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:22.412][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.415][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.418][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:22.421][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:22.422][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:22.423][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:22.424][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:22.425][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:22.426][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:22.426][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:22.427][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.436][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.439][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:22.442][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:22.443][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:22.443][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:22.445][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:22.445][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:22.446][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:22.447][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:22.448][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.451][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.454][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:22.457][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:22.458][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:22.459][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:22.459][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:22.461][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:22.461][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:22.462][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:22.463][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:22.463][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.466][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.469][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:22.470][private$selectFields]
biodb.TRACE[2022-04-09 08:05:22.471][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:22.472][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:22.472][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:22.473][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.474][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.474][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.475][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.476][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.477][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.477][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.478][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.479][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:22.480][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:22.480][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.481][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.482][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.482][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.483][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:22.484][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.487][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.490][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.493][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2022-04-09 08:05:22.494][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:22.495][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:22.495][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:22.497][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:22.497][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:22.498][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:22.499][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:22.499][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.502][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.505][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:22.506][private$selectFields]
biodb.TRACE[2022-04-09 08:05:22.507][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:22.507][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:22.508][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:22.509][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.510][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.510][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.511][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.512][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.513][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.513][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.514][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.515][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:22.516][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:22.516][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.517][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.518][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.519][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.519][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:22.520][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.523][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.526][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.530][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2022-04-09 08:05:22.531][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:22.531][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:22.532][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:22.534][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:22.534][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:22.535][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:22.536][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:22.537][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.540][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.543][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:22.544][private$selectFields]
biodb.TRACE[2022-04-09 08:05:22.545][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:22.545][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:22.546][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:22.547][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.548][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.548][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.549][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.550][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.551][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.551][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.552][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.553][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:22.554][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:22.555][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.555][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.556][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.557][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.558][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:22.558][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.567][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.570][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.574][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2022-04-09 08:05:22.575][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:22.575][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:05:22.577][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:22.578][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:22.578][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:22.580][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:22.580][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:22.581][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:22.582][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:22.663][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:22.665][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:22.666][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2ea9078bc4e1650d61bca0cacdbcb041".
biodb.TRACE[2022-04-09 08:05:22.667][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:22.668][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2ea9078bc4e1650d61bca0cacdbcb041.content".
biodb.DEBUG[2022-04-09 08:05:22.670][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:22.671][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:22.671][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:22.673][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:22.673][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:22.674][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:22.675][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:22.676][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.679][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.681][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:22.689][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:22.690][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:22.691][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:22.692][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:22.693][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:22.693][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:22.694][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:22.695][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.698][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.700][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:22.703][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:22.704][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:22.704][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:22.706][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:22.706][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:22.707][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:22.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:22.708][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.711][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.714][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:22.717][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:22.718][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:22.718][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:22.719][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:22.720][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:22.721][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:22.721][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:22.722][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.725][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.728][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:22.730][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:22.731][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:22.732][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:22.733][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:22.733][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:22.734][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:22.735][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:22.736][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.738][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.741][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:22.744][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:22.745][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:22.745][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:22.747][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:22.747][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:22.748][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:22.748][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:22.749][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.752][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.755][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:22.758][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:22.758][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:22.759][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:22.760][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:22.761][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:22.761][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:22.762][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:22.763][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.766][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.769][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:22.772][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:22.772][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:22.773][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:22.774][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:22.775][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:22.775][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:22.776][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:22.777][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.780][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.783][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:22.786][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:22.787][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:22.788][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:22.789][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:22.789][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:22.790][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:22.791][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:22.792][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.795][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.798][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:22.802][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:22.802][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:22.803][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:22.804][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:22.805][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:22.806][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:22.807][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:22.808][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.817][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.821][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:22.824][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:22.825][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:22.825][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:22.827][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:22.827][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:22.828][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:22.829][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:22.830][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.833][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.836][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:22.839][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:22.840][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:22.841][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:22.842][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:22.843][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:22.844][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:22.844][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:22.845][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.849][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.852][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:22.855][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:22.855][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:22.856][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:22.857][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:22.858][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:22.859][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:22.859][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:22.860][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.863][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.866][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:22.870][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:22.870][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:22.871][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:22.872][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:22.873][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:22.874][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:22.874][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:22.875][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.878][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.881][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:22.884][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:22.885][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:22.885][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:22.887][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:22.887][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:22.888][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:22.889][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:22.889][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.893][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.895][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:22.899][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:22.899][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:22.900][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:22.901][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:22.902][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:22.902][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:22.903][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:22.904][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.907][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.910][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:22.913][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:22.914][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:22.915][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:22.916][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:22.917][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:22.917][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:22.918][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:22.919][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.922][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.925][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:22.928][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:22.929][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:22.930][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:22.931][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:22.932][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:22.932][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:22.933][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:22.934][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.937][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.940][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:22.943][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:22.944][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:22.950][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:22.951][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:22.952][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:22.953][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:22.954][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:22.954][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.957][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.960][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:22.963][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:22.964][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:22.964][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:22.966][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:22.966][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:22.967][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:22.968][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:22.968][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.971][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.974][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:22.977][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:22.978][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:22.978][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:22.980][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:22.980][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:22.981][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:22.981][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:22.982][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.985][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.988][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:22.991][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:22.992][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:22.992][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:22.993][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:22.994][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:22.995][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:22.995][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:22.996][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.999][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.002][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:23.005][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:23.005][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:23.006][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:23.007][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:23.008][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:23.009][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:23.009][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:23.010][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.013][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.016][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:23.019][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:23.020][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:23.020][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:23.021][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:23.022][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:23.023][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:23.023][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:23.024][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.027][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.030][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:23.033][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:23.034][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:23.034][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:23.035][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:23.036][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:23.037][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:23.037][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:23.038][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.041][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.044][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:23.048][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:23.050][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:23.052][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d7672f179ff5d0339b4462dafc99279b".
biodb.TRACE[2022-04-09 08:05:23.053][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:23.054][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d7672f179ff5d0339b4462dafc99279b.content".
biodb.DEBUG[2022-04-09 08:05:23.058][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:23.058][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:23.059][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:23.060][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:23.061][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:23.061][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:23.062][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:23.063][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.066][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.069][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:23.072][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:23.074][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:23.080][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:23.081][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:23.082][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:23.083][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:23.084][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:23.084][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:23.085][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.088][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.091][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:23.092][private$selectFields]
biodb.TRACE[2022-04-09 08:05:23.092][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:23.093][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:23.094][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:23.095][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.095][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.096][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.097][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.098][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.098][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.099][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.100][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.101][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:23.101][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:23.102][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.103][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.104][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.104][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.105][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:23.106][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.109][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.112][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.115][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2022-04-09 08:05:23.116][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:23.117][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:23.117][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:23.119][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:23.119][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:23.120][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:23.121][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:23.122][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.125][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.128][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:23.128][private$selectFields]
biodb.TRACE[2022-04-09 08:05:23.129][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:23.130][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:23.130][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:23.131][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.132][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.133][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.133][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.134][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.135][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.136][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.136][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.137][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:23.138][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:23.139][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.140][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.140][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.141][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.142][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:23.143][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.146][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.149][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.153][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2022-04-09 08:05:23.153][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:23.154][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:23.155][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:23.156][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:23.157][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:23.158][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:23.158][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:23.159][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.162][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.166][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:23.166][private$selectFields]
biodb.TRACE[2022-04-09 08:05:23.167][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:23.168][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:23.169][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:23.170][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.170][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.171][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.172][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.173][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.173][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.174][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.175][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.176][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:23.177][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:23.177][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.178][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.179][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.180][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.181][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:23.181][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.185][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.188][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.192][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2022-04-09 08:05:23.192][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:23.193][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-04-09 08:05:23.218][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.221][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.225][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.228][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.231][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.234][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.237][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.240][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.243][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.246][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.249][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.253][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:23.258][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:23.258][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:23.259][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:23.261][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:23.261][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:23.262][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:23.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:23.361][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:23.363][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:05:23.364][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:05:23.365][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-04-09 08:05:23.807][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-04-09 08:05:24.463][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:05:24.488][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4d5b921f88c8441be6a678700f44ffee.content"
biodb.TRACE[2022-04-09 08:05:24.510][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4d5b921f88c8441be6a678700f44ffee.request"
biodb.DEBUG[2022-04-09 08:05:24.521][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:24.522][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:24.522][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:24.524][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:24.525][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:24.525][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:24.526][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:24.527][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:24.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:24.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.530][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:24.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:24.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.533][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:24.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:24.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:24.536][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:24.537][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:24.537][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:24.539][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:24.539][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:24.540][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:24.541][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:24.542][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:24.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:24.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.545][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:24.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:24.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.547][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:24.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:24.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:24.550][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:24.551][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:24.552][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:24.553][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:24.554][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:24.554][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:24.555][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:24.556][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:24.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:24.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.559][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:24.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:24.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.562][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:24.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:24.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:24.565][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:24.566][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:24.566][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:24.568][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:24.569][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:24.569][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:24.570][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:24.571][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:24.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:24.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.574][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:24.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:24.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.577][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:24.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:24.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:24.580][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:24.581][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:24.581][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:24.583][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:24.583][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:24.584][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:24.585][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:24.586][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:24.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:24.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.589][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:24.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:24.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.592][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:24.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:24.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:24.595][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:24.596][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:24.596][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:24.598][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:24.598][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:24.599][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:24.600][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:24.600][private$loadEntries] Creating entries from ids [1]: "9442".
biodb.DEBUG[2022-04-09 08:05:24.601][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:24.608][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9442".
biodb.TRACE[2022-04-09 08:05:24.609][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:05:24.611][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:05:24.612][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:24.613][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:05:24.613][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:05:24.614][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:05:24.616][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:24.617][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:24.617][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:24.619][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:24.619][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:24.620][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:24.621][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:24.622][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9442".
biodb.DEBUG[2022-04-09 08:05:24.624][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:05:24.624][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:05:24.625][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9442".
biodb.TRACE[2022-04-09 08:05:25.062][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9442).
biodb.DEBUG[2022-04-09 08:05:25.543][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:05:25.557][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7d1576b26aed79f4c1d758a3f87c749b.content"
biodb.TRACE[2022-04-09 08:05:25.578][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7d1576b26aed79f4c1d758a3f87c749b.request"
biodb.TRACE[2022-04-09 08:05:25.598][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9442.xml"
biodb.DEBUG[2022-04-09 08:05:25.605][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:05:25.622][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:25.623][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:25.624][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:25.625][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:25.626][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:25.627][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:25.628][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:25.629][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:25.629][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:25.631][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:25.632][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:25.633][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.634][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.635][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:25.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:25.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.645][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:25.646][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:25.647][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.648][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.649][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:25.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:25.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.659][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:25.660][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:25.660][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.661][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.662][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:25.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:25.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.678][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:25.679][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:25.680][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.681][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.682][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:25.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:25.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.691][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:25.692][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:25.693][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.693][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.694][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:25.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:25.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.704][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:25.705][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:25.705][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.706][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.707][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:25.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:25.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.717][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:25.717][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:25.718][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.719][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.720][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:25.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:25.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.729][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:25.730][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:25.731][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.731][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.732][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:25.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:25.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.741][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:25.742][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:25.743][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.743][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.745][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:25.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:25.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.754][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:25.754][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:25.755][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.756][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.757][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:25.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:25.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.767][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:25.767][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:25.768][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.769][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.770][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:25.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:25.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.780][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:25.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:25.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.783][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:25.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:25.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:25.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:25.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.789][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:25.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:25.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.792][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:25.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:25.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:25.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:25.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.805][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:25.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:25.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.815][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:25.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:25.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.817][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:25.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:25.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.820][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:25.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:25.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:25.823][self$createEntryFromContent] Accession numbers: 9442.
biodb.TRACE[2022-04-09 08:05:25.824][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:25.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:25.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.827][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:25.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:25.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.830][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:25.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:25.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:25.833][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:25.834][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:25.834][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:25.836][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:25.837][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:25.837][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:25.838][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:25.839][private$loadEntries] Creating entries from ids [1]: "34764".
biodb.DEBUG[2022-04-09 08:05:25.839][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:25.841][cch$loadFileContent] Trying to load 1 files from cache: [1]: "34764".
biodb.TRACE[2022-04-09 08:05:25.842][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:05:25.842][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:05:25.843][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:25.844][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:05:25.845][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:05:25.845][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:05:25.848][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:25.848][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:25.849][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:25.850][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:25.851][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:25.852][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:25.852][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:25.853][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=34764".
biodb.DEBUG[2022-04-09 08:05:25.855][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:05:25.856][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:05:25.857][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=34764".
biodb.TRACE[2022-04-09 08:05:26.302][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=34764).
biodb.DEBUG[2022-04-09 08:05:26.788][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:05:26.802][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a38508ac0dc37ed2da31f7bda33ae97f.content"
biodb.TRACE[2022-04-09 08:05:26.826][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a38508ac0dc37ed2da31f7bda33ae97f.request"
biodb.TRACE[2022-04-09 08:05:26.849][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/34764.xml"
biodb.DEBUG[2022-04-09 08:05:26.857][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:05:26.885][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:26.886][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:26.888][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:26.889][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:26.889][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:26.891][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:26.892][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:26.892][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:26.893][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:26.895][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:26.896][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:26.897][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.897][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.898][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:26.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:26.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.910][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:26.911][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:26.911][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.912][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.913][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:26.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:26.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.924][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:26.925][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:26.925][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.926][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.927][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:26.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:26.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.937][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:26.937][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:26.938][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.939][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.940][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:26.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:26.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.949][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:26.950][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:26.951][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.951][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.952][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:26.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:26.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.962][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:26.963][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:26.963][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.964][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.965][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:26.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:26.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.975][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:26.975][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:26.976][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.977][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.978][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:26.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:26.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.987][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:26.988][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:26.989][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.990][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.991][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:26.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:26.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.000][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:27.001][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:27.002][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.003][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.004][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:27.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:27.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.020][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:27.021][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:27.021][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.022][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.023][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:27.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:27.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.032][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:27.033][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:27.034][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.034][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.035][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:27.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:27.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.045][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.048][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:27.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:27.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.054][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.056][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:27.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:27.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.059][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:27.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:27.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.062][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:27.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:27.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:27.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:27.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.074][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:27.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:27.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.077][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:27.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:27.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:27.080][self$createEntryFromContent] Accession numbers: 34764.
biodb.TRACE[2022-04-09 08:05:27.081][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:27.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:27.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.084][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:27.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:27.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.087][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:27.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:27.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:27.090][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:27.092][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:27.092][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:27.093][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:27.095][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:27.095][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:27.096][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:27.097][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:27.098][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.101][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.104][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:27.104][private$selectFields]
biodb.TRACE[2022-04-09 08:05:27.105][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:27.106][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:27.107][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:27.107][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.108][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.109][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.110][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.110][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.111][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.112][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.113][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.113][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:27.114][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:27.115][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.116][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.117][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.117][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.118][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:27.119][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.122][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.125][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.129][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2022-04-09 08:05:27.130][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:27.130][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:27.131][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:27.133][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:27.133][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:27.134][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:27.135][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:27.136][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.139][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.147][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:27.148][private$selectFields]
biodb.TRACE[2022-04-09 08:05:27.149][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:27.150][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:27.151][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:27.152][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.153][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.154][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.154][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.155][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.156][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.157][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.157][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.158][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:27.159][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:27.160][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.160][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.161][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.162][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.162][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:27.163][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.166][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.169][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.172][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2022-04-09 08:05:27.173][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:27.174][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:27.175][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:27.176][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:27.177][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:27.177][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:27.178][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:27.179][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.182][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.185][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:27.186][private$selectFields]
biodb.TRACE[2022-04-09 08:05:27.187][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:27.187][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:27.188][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:27.189][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.189][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.190][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.191][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.192][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.192][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.193][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.194][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.195][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:27.195][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:27.196][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.197][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.197][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.198][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.199][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:27.200][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.203][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.206][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.209][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [34764].
biodb.DEBUG[2022-04-09 08:05:27.209][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:27.210][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:05:27.212][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:27.212][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:27.213][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:27.215][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:27.215][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:27.216][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:27.217][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:27.309][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:27.311][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:05:27.312][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:05:27.313][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480*&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-04-09 08:05:27.758][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480*&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-04-09 08:05:28.615][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:05:28.629][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5104bb979c9ec31aa9634ac7a986155.content"
biodb.TRACE[2022-04-09 08:05:28.649][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5104bb979c9ec31aa9634ac7a986155.request"
biodb.DEBUG[2022-04-09 08:05:28.661][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:28.662][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:28.662][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:28.664][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:28.664][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:28.665][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:28.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:28.667][private$loadEntries] Creating entries from ids [1]: "2535".
biodb.DEBUG[2022-04-09 08:05:28.667][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:28.669][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2535".
biodb.TRACE[2022-04-09 08:05:28.670][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:05:28.670][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:05:28.671][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:28.672][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:05:28.673][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:05:28.674][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:05:28.676][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:28.676][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:28.677][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:28.679][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:28.679][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:28.680][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:28.681][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:28.681][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2535".
biodb.DEBUG[2022-04-09 08:05:28.684][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:05:28.684][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:05:28.685][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2535".
biodb.TRACE[2022-04-09 08:05:29.138][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2535).
biodb.DEBUG[2022-04-09 08:05:29.722][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:05:29.735][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e1d9514645c3005d4e4f643b2d18f099.content"
biodb.TRACE[2022-04-09 08:05:29.756][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e1d9514645c3005d4e4f643b2d18f099.request"
biodb.TRACE[2022-04-09 08:05:29.785][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2535.xml"
biodb.DEBUG[2022-04-09 08:05:29.792][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:05:29.808][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:29.809][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:29.810][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:29.811][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:29.811][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:29.813][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:29.813][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:29.814][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:29.815][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:29.816][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:29.817][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:29.818][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.818][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.819][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:29.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:29.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.828][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:29.829][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:29.830][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.830][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.831][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:29.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:29.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.840][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:29.841][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:29.842][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.842][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.843][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:29.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:29.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.852][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:29.853][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:29.854][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.854][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.856][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:29.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:29.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.865][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:29.866][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:29.866][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.867][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.868][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:29.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:29.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.877][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:29.878][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:29.879][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.880][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.886][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:29.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:29.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.896][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:29.897][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:29.897][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.898][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.899][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:29.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:29.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.908][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:29.908][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:29.909][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.910][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.911][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:29.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:29.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.919][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:29.920][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:29.921][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.922][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.923][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:29.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:29.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.931][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:29.932][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:29.933][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.933][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.934][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:29.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:29.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.943][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:29.944][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:29.945][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.945][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.946][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:29.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:29.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.955][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:29.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:29.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.958][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:29.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:29.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.961][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:29.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:29.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.964][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:29.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:29.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.967][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:29.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:29.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.970][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:29.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:29.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.973][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:29.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:29.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.983][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:29.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:29.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.986][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:29.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:29.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.989][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:29.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:29.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:29.992][self$createEntryFromContent] Accession numbers: 2535.
biodb.TRACE[2022-04-09 08:05:29.993][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:29.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:29.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.996][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:29.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:29.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.999][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:30.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:30.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:30.003][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:30.003][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:30.004][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:30.011][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:30.012][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:30.013][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:30.014][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:30.015][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:30.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:30.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.018][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:30.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:30.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.021][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:30.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:30.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:30.024][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:30.024][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:30.025][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:30.026][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:30.027][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:30.028][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:30.028][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:30.029][private$loadEntries] Creating entries from ids [1]: "5525".
biodb.DEBUG[2022-04-09 08:05:30.030][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:30.031][cch$loadFileContent] Trying to load 1 files from cache: [1]: "5525".
biodb.TRACE[2022-04-09 08:05:30.032][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:05:30.033][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:05:30.034][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:30.035][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:05:30.035][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:05:30.036][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:05:30.038][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:30.039][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:30.040][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:30.041][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:30.042][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:30.042][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:30.043][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:30.044][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=5525".
biodb.DEBUG[2022-04-09 08:05:30.046][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:05:30.047][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:05:30.048][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=5525".
biodb.TRACE[2022-04-09 08:05:30.769][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=5525).
biodb.DEBUG[2022-04-09 08:05:31.250][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:05:31.264][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8c1563abc6b93d34a6b6b66375881583.content"
biodb.TRACE[2022-04-09 08:05:31.284][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8c1563abc6b93d34a6b6b66375881583.request"
biodb.TRACE[2022-04-09 08:05:31.305][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5525.xml"
biodb.DEBUG[2022-04-09 08:05:31.312][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:05:31.330][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:31.331][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:31.332][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:31.333][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:31.334][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:31.335][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:31.336][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:31.337][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:31.337][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:31.339][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:31.340][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:31.341][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.342][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.343][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:31.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:31.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.359][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:31.360][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:31.360][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.361][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.362][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:31.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:31.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.371][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:31.372][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:31.373][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.374][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.374][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:31.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:31.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.384][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:31.384][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:31.385][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.386][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.387][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:31.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:31.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.396][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:31.396][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:31.397][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.398][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.399][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:31.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:31.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.408][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:31.409][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:31.409][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.410][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.411][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:31.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:31.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.420][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:31.421][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.421][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.422][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.423][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:31.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.432][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:31.433][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:31.434][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.434][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.435][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:31.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:31.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.445][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:31.445][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:31.446][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.447][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.448][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:31.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:31.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.457][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:31.458][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:31.459][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.460][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.461][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:31.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:31.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.475][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:31.476][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:31.477][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.478][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.479][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:31.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:31.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.489][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.492][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.495][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:31.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:31.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.498][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.501][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:31.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:31.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.503][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:31.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:31.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.506][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:31.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:31.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.515][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:31.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:31.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.518][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:31.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:31.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.521][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:31.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:31.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:31.524][self$createEntryFromContent] Accession numbers: 5525.
biodb.TRACE[2022-04-09 08:05:31.525][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:31.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:31.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.527][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:31.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:31.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.530][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:31.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:31.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:31.533][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:31.534][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:31.534][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:31.536][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:31.536][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:31.537][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:31.538][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:31.539][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:31.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:31.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.541][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:31.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:31.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.544][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:31.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:31.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:31.547][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:31.549][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:31.549][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:31.550][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:31.551][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:31.552][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:31.553][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:31.553][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:31.554][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.557][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.560][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:31.561][private$selectFields]
biodb.TRACE[2022-04-09 08:05:31.561][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:31.562][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:31.563][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:31.564][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.564][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.565][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.566][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.566][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.567][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.568][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.568][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.569][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:31.570][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:31.571][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.571][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.572][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.573][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.574][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:31.574][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.577][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.580][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.583][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [2535].
biodb.DEBUG[2022-04-09 08:05:31.584][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:31.585][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:31.585][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:31.587][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:31.587][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:31.588][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:31.589][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:31.590][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.593][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.601][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:31.602][private$selectFields]
biodb.TRACE[2022-04-09 08:05:31.603][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:31.604][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:31.605][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:31.605][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.606][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.607][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.607][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.608][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.609][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.610][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.610][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.611][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:31.612][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:31.613][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.613][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.614][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.615][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.615][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:31.616][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.619][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.622][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.625][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2022-04-09 08:05:31.626][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:31.626][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:31.627][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:31.628][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:31.629][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:31.630][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:31.630][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:31.631][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.634][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.637][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:31.638][private$selectFields]
biodb.TRACE[2022-04-09 08:05:31.638][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:31.639][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:31.640][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:31.640][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.641][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.642][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.642][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.643][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.644][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.645][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.645][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.646][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:31.647][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:31.647][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.648][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.649][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.650][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.650][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:31.651][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.654][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.657][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.660][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2022-04-09 08:05:31.660][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:31.661][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:05:31.663][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:31.663][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:31.664][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:31.665][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:31.666][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:31.666][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:31.667][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:31.756][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:31.758][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:05:31.759][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:05:31.760][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9*&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-04-09 08:05:32.386][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9*&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-04-09 08:05:32.863][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:05:32.877][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/beb9d154bf0d4e4f372dd6176fab59e2.content"
biodb.TRACE[2022-04-09 08:05:32.897][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/beb9d154bf0d4e4f372dd6176fab59e2.request"
biodb.DEBUG[2022-04-09 08:05:32.905][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:32.906][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:32.906][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:32.908][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:32.908][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:32.909][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:32.910][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:32.911][private$loadEntries] Creating entries from ids [1]: "31303".
biodb.DEBUG[2022-04-09 08:05:32.911][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:32.913][cch$loadFileContent] Trying to load 1 files from cache: [1]: "31303".
biodb.TRACE[2022-04-09 08:05:32.913][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:05:32.914][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:05:32.915][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:32.916][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:05:32.917][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:05:32.917][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:05:32.919][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:32.920][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:32.921][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:32.922][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:32.923][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:32.923][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:32.924][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:32.925][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=31303".
biodb.DEBUG[2022-04-09 08:05:32.927][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:05:32.927][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:05:32.928][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=31303".
biodb.TRACE[2022-04-09 08:05:33.370][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=31303).
biodb.DEBUG[2022-04-09 08:05:33.836][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:05:33.853][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/99089a071b7e4bcfb0ef9a12b49b39b2.content"
biodb.TRACE[2022-04-09 08:05:33.875][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/99089a071b7e4bcfb0ef9a12b49b39b2.request"
biodb.TRACE[2022-04-09 08:05:33.906][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/31303.xml"
biodb.DEBUG[2022-04-09 08:05:33.914][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:05:33.932][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:33.933][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:33.934][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:33.935][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:33.935][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:33.937][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:33.938][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:33.939][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:33.940][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:33.942][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:33.943][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:33.943][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.944][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.945][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:33.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:33.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.955][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:33.956][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:33.956][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.957][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.958][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:33.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:33.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.967][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:33.968][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:33.969][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.970][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.971][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:33.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:33.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.980][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:33.981][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:33.982][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.983][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.984][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:33.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:33.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.993][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:33.994][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:33.995][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.995][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.996][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:33.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:33.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.006][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:34.006][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:34.007][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.008][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.009][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:34.010][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.010][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.011][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.012][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:34.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.028][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.029][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.030][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.030][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.031][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.040][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:34.041][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:34.042][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.042][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.043][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:34.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:34.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.052][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:34.053][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:34.054][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.054][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.055][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:34.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:34.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.064][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:34.065][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:34.066][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.066][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.067][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:34.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:34.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.076][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.079][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.082][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:34.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:34.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.085][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.088][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:34.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:34.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.091][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:34.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:34.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.093][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:34.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:34.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.102][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:34.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:34.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.105][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:34.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:34.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.108][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:34.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:34.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:34.111][self$createEntryFromContent] Accession numbers: 31303.
biodb.TRACE[2022-04-09 08:05:34.112][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.115][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.118][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:34.121][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:34.122][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:34.122][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:34.124][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:34.125][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:34.125][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:34.126][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:34.127][private$loadEntries] Creating entries from ids [1]: "37118".
biodb.DEBUG[2022-04-09 08:05:34.128][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:34.129][cch$loadFileContent] Trying to load 1 files from cache: [1]: "37118".
biodb.TRACE[2022-04-09 08:05:34.130][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:05:34.130][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:05:34.131][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:34.132][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:05:34.133][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:05:34.134][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:05:34.136][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:34.136][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:34.137][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:34.138][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:34.139][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:34.140][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:34.145][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:34.147][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=37118".
biodb.DEBUG[2022-04-09 08:05:34.150][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:05:34.150][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:05:34.152][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=37118".
biodb.TRACE[2022-04-09 08:05:34.590][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=37118).
biodb.DEBUG[2022-04-09 08:05:35.047][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:05:35.072][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37e09c6197385dffaf0a241198ec6309.content"
biodb.TRACE[2022-04-09 08:05:35.093][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37e09c6197385dffaf0a241198ec6309.request"
biodb.TRACE[2022-04-09 08:05:35.113][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37118.xml"
biodb.DEBUG[2022-04-09 08:05:35.120][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:05:35.137][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:35.138][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:35.139][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:35.140][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:35.140][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:35.142][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:35.143][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:35.143][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:35.144][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:35.146][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:35.147][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:35.147][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.148][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:35.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:35.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.159][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:35.160][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:35.160][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.161][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.162][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:35.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:35.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.172][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:35.172][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:35.173][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.174][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.175][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:35.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:35.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.184][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:35.190][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:35.191][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.192][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.194][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:35.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:35.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.203][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:35.204][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:35.205][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.205][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.206][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:35.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:35.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.215][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:35.216][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:35.217][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.217][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.218][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:35.219][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:35.220][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.221][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.221][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:35.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:35.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.230][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:35.231][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:35.232][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.233][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.234][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:35.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:35.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.242][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:35.243][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:35.244][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.245][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.246][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:35.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:35.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.254][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:35.255][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:35.256][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.257][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.257][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:35.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:35.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.266][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:35.267][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:35.268][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.269][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.269][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:35.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:35.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.279][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.282][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.285][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:35.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:35.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.288][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.291][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:35.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:35.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:35.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:35.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.297][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:35.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:35.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.306][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:35.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:35.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:35.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:35.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.319][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:35.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:35.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:35.322][self$createEntryFromContent] Accession numbers: 37118.
biodb.TRACE[2022-04-09 08:05:35.323][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:35.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:35.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.326][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:35.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:35.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.329][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:35.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:35.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:35.332][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:35.333][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:35.334][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:35.335][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:35.336][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:35.336][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:35.337][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:35.338][private$loadEntries] Creating entries from ids [1]: "39424".
biodb.DEBUG[2022-04-09 08:05:35.339][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:35.340][cch$loadFileContent] Trying to load 1 files from cache: [1]: "39424".
biodb.TRACE[2022-04-09 08:05:35.341][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:05:35.342][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:05:35.343][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:35.343][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:05:35.344][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:05:35.345][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:05:35.347][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:35.347][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:35.348][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:35.350][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:35.350][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:35.351][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:35.351][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:35.352][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=39424".
biodb.DEBUG[2022-04-09 08:05:35.354][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:05:35.355][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:05:35.356][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=39424".
biodb.TRACE[2022-04-09 08:05:35.794][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=39424).
biodb.DEBUG[2022-04-09 08:05:36.266][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:05:36.280][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/da5bac251de02a0ce66c3d69c0d59bb8.content"
biodb.TRACE[2022-04-09 08:05:36.302][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/da5bac251de02a0ce66c3d69c0d59bb8.request"
biodb.TRACE[2022-04-09 08:05:36.322][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/39424.xml"
biodb.DEBUG[2022-04-09 08:05:36.330][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:05:36.348][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:36.349][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:36.351][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:36.352][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:36.352][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:36.354][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:36.354][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:36.355][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:36.356][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:36.358][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:36.359][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:36.359][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.360][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.361][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:36.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:36.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.378][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:36.379][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:36.379][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.380][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.381][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:36.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:36.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.391][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:36.391][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:36.392][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.393][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.394][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:36.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:36.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.403][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:36.404][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:36.405][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.406][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.407][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:36.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:36.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.416][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:36.417][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:36.417][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.418][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.419][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:36.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:36.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.428][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:36.429][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:36.429][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.430][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.431][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:36.432][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:36.432][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.433][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.434][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:36.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:36.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.443][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.444][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.445][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.446][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.446][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.456][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:36.457][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:36.457][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.458][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.459][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:36.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:36.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.469][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:36.470][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:36.470][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.471][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.472][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:36.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:36.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.482][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:36.482][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:36.483][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.484][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.485][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:36.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:36.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.501][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.504][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.507][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:36.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:36.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.510][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:36.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:36.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.516][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:36.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:36.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.519][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:36.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:36.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:36.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:36.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.532][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:36.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:36.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.535][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:36.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:36.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:36.538][self$createEntryFromContent] Accession numbers: 39424.
biodb.TRACE[2022-04-09 08:05:36.539][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.542][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.544][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:36.547][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:36.548][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:36.549][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:36.550][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:36.551][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:36.551][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:36.552][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:36.553][private$loadEntries] Creating entries from ids [1]: "81767".
biodb.DEBUG[2022-04-09 08:05:36.554][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:36.555][cch$loadFileContent] Trying to load 1 files from cache: [1]: "81767".
biodb.TRACE[2022-04-09 08:05:36.556][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:05:36.557][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:05:36.557][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:36.558][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:05:36.559][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:05:36.560][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:05:36.562][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:36.562][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:36.563][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:36.564][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:36.565][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:36.566][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:36.566][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:36.567][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=81767".
biodb.DEBUG[2022-04-09 08:05:36.569][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:05:36.570][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:05:36.571][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=81767".
biodb.TRACE[2022-04-09 08:05:37.024][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=81767).
biodb.DEBUG[2022-04-09 08:05:37.500][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:05:37.514][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6d9dc9192959d977e17745ebfa06bb73.content"
biodb.TRACE[2022-04-09 08:05:37.534][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6d9dc9192959d977e17745ebfa06bb73.request"
biodb.TRACE[2022-04-09 08:05:37.554][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/81767.xml"
biodb.DEBUG[2022-04-09 08:05:37.570][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:05:37.586][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:37.587][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:37.588][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:37.589][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:37.590][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:37.591][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:37.592][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:37.592][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:37.593][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:37.595][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:37.595][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:37.596][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.597][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.598][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:37.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:37.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.607][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:37.607][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:37.608][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.609][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.610][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:37.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:37.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.618][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:37.619][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:37.620][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.621][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.622][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:37.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:37.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.630][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:37.631][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:37.632][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.632][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.633][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:37.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:37.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.642][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:37.643][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:37.643][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.644][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.645][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:37.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:37.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.653][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:37.654][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:37.655][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.656][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.657][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:37.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:37.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.666][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:37.666][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:37.667][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.668][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.669][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:37.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:37.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.678][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:37.679][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:37.679][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.680][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.681][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:37.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:37.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.696][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:37.697][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:37.697][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.698][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.699][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:37.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:37.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.708][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:37.708][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:37.709][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.710][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.711][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:37.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:37.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.719][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:37.720][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:37.721][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.721][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.722][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:37.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:37.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.731][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.734][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.737][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:37.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:37.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.739][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.742][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:37.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:37.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.745][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:37.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:37.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:37.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:37.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.757][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:37.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:37.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.759][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:37.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:37.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.762][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:37.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:37.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:37.765][self$createEntryFromContent] Accession numbers: 81767.
biodb.TRACE[2022-04-09 08:05:37.766][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:37.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:37.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.769][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:37.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:37.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.772][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:37.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:37.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:37.775][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:37.775][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:37.776][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:37.777][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:37.778][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:37.779][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:37.779][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:37.780][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:37.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:37.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.783][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:37.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:37.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.786][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:37.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:37.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:37.789][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:37.791][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:37.791][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:37.792][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:37.793][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:37.794][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:37.795][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:37.795][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:37.796][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.799][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.802][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:37.803][private$selectFields]
biodb.TRACE[2022-04-09 08:05:37.803][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:37.809][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:37.810][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:37.811][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.812][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.813][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.813][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.814][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.815][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.816][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.816][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.817][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:37.818][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:37.818][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.819][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.820][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.820][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.821][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:37.822][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.825][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.828][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.831][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [31303].
biodb.DEBUG[2022-04-09 08:05:37.831][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:37.832][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:37.833][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:37.834][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:37.835][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:37.835][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:37.836][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:37.837][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.840][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.842][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:37.843][private$selectFields]
biodb.TRACE[2022-04-09 08:05:37.844][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:37.844][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:37.845][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:37.846][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.846][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.847][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.848][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.848][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.849][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.850][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.850][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.851][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:37.852][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:37.853][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.853][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.854][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.855][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.855][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:37.856][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.859][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.861][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.864][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [81767].
biodb.DEBUG[2022-04-09 08:05:37.865][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:37.866][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:37.866][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:37.868][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:37.868][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:37.869][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:37.870][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:37.870][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.873][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.876][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:37.877][private$selectFields]
biodb.TRACE[2022-04-09 08:05:37.877][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:37.878][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:37.879][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:37.879][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.880][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.881][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.881][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.882][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.883][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.884][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.884][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.885][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:37.886][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:37.886][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.887][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.888][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.888][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.889][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:37.890][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.893][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.896][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.899][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [131378].
biodb.DEBUG[2022-04-09 08:05:37.899][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:37.900][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:05:37.916][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:37.916][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:37.917][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:37.918][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:37.919][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:37.919][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:37.920][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:38.005][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:38.007][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:38.008][cch$loadFileContent] Trying to load 1 files from cache: [1]: "c60f2116f91d4ce61370ae6298305b49".
biodb.TRACE[2022-04-09 08:05:38.009][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:38.010][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c60f2116f91d4ce61370ae6298305b49.content".
biodb.DEBUG[2022-04-09 08:05:38.013][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:38.015][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:38.016][cch$loadFileContent] Trying to load 1 files from cache: [1]: "921bb2fccd1f3497458cb7cf8fd2ffda".
biodb.TRACE[2022-04-09 08:05:38.016][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:38.017][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/921bb2fccd1f3497458cb7cf8fd2ffda.content".
biodb.DEBUG[2022-04-09 08:05:38.019][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:38.020][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:38.020][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:38.022][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:38.022][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:38.023][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:38.024][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:38.025][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.028][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.031][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:38.034][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:38.034][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:38.035][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:38.036][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:38.037][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:38.037][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:38.038][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:38.039][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.042][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.050][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:38.053][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:38.054][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:38.055][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:38.056][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:38.057][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:38.057][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:38.058][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:38.059][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.062][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.064][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:38.067][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:38.068][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:38.069][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:38.070][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:38.071][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:38.071][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:38.072][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:38.073][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:38.074][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.076][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.079][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:38.080][private$selectFields]
biodb.TRACE[2022-04-09 08:05:38.081][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:38.081][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:38.082][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:38.083][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.083][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.084][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.085][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.085][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.086][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.087][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.087][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.088][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:38.089][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:38.089][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.090][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.091][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.092][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.092][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:38.093][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.096][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.098][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.102][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2022-04-09 08:05:38.102][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:38.103][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:38.104][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:38.105][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:38.105][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:38.106][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:38.107][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:38.107][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.110][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.113][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:38.114][private$selectFields]
biodb.TRACE[2022-04-09 08:05:38.114][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:38.115][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:38.116][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:38.116][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.117][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.118][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.118][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.119][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.120][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.121][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.121][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.122][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:38.123][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:38.123][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.124][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.125][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.125][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.126][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:38.127][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.130][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.132][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.136][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-04-09 08:05:38.136][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:38.137][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:38.138][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:38.139][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:38.140][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:38.140][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:38.141][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:38.142][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.145][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.148][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:38.148][private$selectFields]
biodb.TRACE[2022-04-09 08:05:38.149][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:38.150][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:38.150][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:38.151][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.152][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.153][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.153][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.154][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.155][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.155][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.156][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.157][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:38.158][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:38.158][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.159][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.160][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.160][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.161][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:38.162][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.165][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.174][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.177][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2022-04-09 08:05:38.177][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:38.178][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:05:38.180][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:38.180][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:38.181][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:38.182][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:38.183][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:38.183][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:38.184][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:38.262][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:38.265][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:38.266][cch$loadFileContent] Trying to load 1 files from cache: [1]: "839357b56387b64c91d43055dd5c5193".
biodb.TRACE[2022-04-09 08:05:38.267][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:38.268][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/839357b56387b64c91d43055dd5c5193.content".
biodb.DEBUG[2022-04-09 08:05:38.269][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:38.270][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:38.271][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:38.272][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:38.273][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:38.273][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:38.274][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:38.275][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.278][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.281][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:38.290][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:38.290][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:38.291][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:38.293][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:38.293][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:38.294][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:38.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:38.295][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.298][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.301][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:38.304][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:38.305][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:38.305][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:38.306][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:38.307][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:38.308][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:38.308][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:38.309][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.312][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.315][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:38.318][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:38.319][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:38.320][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:38.320][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:38.321][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:38.322][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:38.323][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:38.323][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:38.324][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.327][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.330][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:38.330][private$selectFields]
biodb.TRACE[2022-04-09 08:05:38.331][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:38.332][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:38.332][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:38.333][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.334][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.334][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.335][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.336][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.336][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.337][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.338][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.338][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:38.339][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:38.340][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.341][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.341][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.342][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.343][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:38.344][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.346][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.349][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.352][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2022-04-09 08:05:38.353][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:38.354][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:38.355][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:38.356][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:38.357][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:38.357][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:38.358][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:38.359][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.362][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.365][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:38.365][private$selectFields]
biodb.TRACE[2022-04-09 08:05:38.366][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:38.367][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:38.367][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:38.368][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.369][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.370][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.370][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.371][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.372][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.373][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.373][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.374][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:38.375][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:38.375][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.376][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.377][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.378][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.378][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:38.379][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.382][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.385][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.389][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2022-04-09 08:05:38.389][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:38.390][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:38.391][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:38.392][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:38.393][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:38.393][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:38.394][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:38.395][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.398][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.401][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:38.402][private$selectFields]
biodb.TRACE[2022-04-09 08:05:38.402][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:38.403][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:38.404][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:38.405][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.405][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.406][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.407][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.413][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.414][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.415][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.416][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.417][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:38.418][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:38.418][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.419][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.420][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.420][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.421][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:38.422][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.425][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.428][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.431][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2022-04-09 08:05:38.432][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:38.432][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:05:38.434][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:38.435][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:38.435][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:38.437][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:38.437][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:38.438][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:38.438][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:38.519][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:38.522][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:38.523][cch$loadFileContent] Trying to load 1 files from cache: [1]: "432bde1fb4bc526aec38c781f579d7cb".
biodb.TRACE[2022-04-09 08:05:38.524][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:38.525][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/432bde1fb4bc526aec38c781f579d7cb.content".
biodb.DEBUG[2022-04-09 08:05:38.527][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:38.532][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:38.534][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:38.535][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:38.536][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:38.537][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:38.538][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:38.538][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.542][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.544][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:38.547][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:38.548][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:38.549][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:38.550][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:38.550][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:38.551][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:38.552][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:38.553][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.555][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.558][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:38.561][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:38.562][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:38.562][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:38.564][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:38.564][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:38.565][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:38.566][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:38.566][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.569][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.572][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:38.575][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:38.576][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:38.577][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:38.578][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:38.579][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:38.579][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:38.580][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:38.581][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:38.582][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.584][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.587][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:38.588][private$selectFields]
biodb.TRACE[2022-04-09 08:05:38.588][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:38.589][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:38.590][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:38.591][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.591][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.592][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.593][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.593][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.594][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.595][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.595][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.596][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:38.597][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:38.597][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.598][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.599][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.600][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.600][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:38.601][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.604][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.607][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.610][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2022-04-09 08:05:38.611][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:38.611][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:38.612][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:38.613][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:38.614][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:38.615][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:38.615][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:38.616][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.619][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.622][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:38.623][private$selectFields]
biodb.TRACE[2022-04-09 08:05:38.623][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:38.624][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:38.625][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:38.625][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.626][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.627][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.628][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.628][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.629][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.630][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.631][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.631][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:38.632][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:38.633][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.634][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.634][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.635][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.636][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:38.637][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.640][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.643][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.646][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2022-04-09 08:05:38.647][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:38.647][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:38.648][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:38.649][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:38.650][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:38.651][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:38.651][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:38.660][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.664][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.668][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:38.669][private$selectFields]
biodb.TRACE[2022-04-09 08:05:38.670][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:38.670][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:38.671][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:38.672][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.673][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.673][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.674][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.675][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.675][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.676][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.677][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.678][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:38.678][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:38.679][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.680][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.680][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.681][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.682][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:38.682][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.685][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.688][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.691][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2022-04-09 08:05:38.692][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:38.693][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:05:38.708][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:38.709][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:38.709][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:38.710][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:38.711][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:38.712][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:38.712][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:38.803][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:38.805][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:05:38.806][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:05:38.807][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-04-09 08:05:39.242][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-04-09 08:05:39.718][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:05:39.732][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/460e5a713fddea0c2866dcbc892dfc2b.content"
biodb.TRACE[2022-04-09 08:05:39.752][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/460e5a713fddea0c2866dcbc892dfc2b.request"
biodb.DEBUG[2022-04-09 08:05:39.760][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:39.761][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:39.762][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:39.763][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:39.764][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:39.764][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:39.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:39.766][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:39.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:39.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.769][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:39.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:39.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.772][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:39.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:39.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:39.775][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:39.775][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:39.776][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:39.777][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:39.778][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:39.778][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:39.779][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:39.780][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:39.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:39.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.783][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:39.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:39.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.785][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:39.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:39.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:39.788][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:39.789][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:39.790][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:39.791][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:39.792][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:39.792][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:39.793][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:39.794][private$loadEntries] Creating entries from ids [1]: "17813".
biodb.DEBUG[2022-04-09 08:05:39.794][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:39.796][cch$loadFileContent] Trying to load 1 files from cache: [1]: "17813".
biodb.TRACE[2022-04-09 08:05:39.797][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:05:39.797][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:05:39.798][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:39.799][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:05:39.800][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:05:39.800][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:05:39.802][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:39.803][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:39.804][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:39.805][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:39.806][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:39.806][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:39.807][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:39.808][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=17813".
biodb.DEBUG[2022-04-09 08:05:39.811][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:05:39.812][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:05:39.813][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=17813".
biodb.TRACE[2022-04-09 08:05:40.262][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=17813).
biodb.DEBUG[2022-04-09 08:05:40.738][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:05:40.753][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62f7e1534a05c51cc1431eff021df0bd.content"
biodb.TRACE[2022-04-09 08:05:40.785][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62f7e1534a05c51cc1431eff021df0bd.request"
biodb.TRACE[2022-04-09 08:05:40.806][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/17813.xml"
biodb.DEBUG[2022-04-09 08:05:40.813][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:05:40.830][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:40.831][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:40.832][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:40.833][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:40.833][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:40.835][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:40.835][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:40.836][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:40.837][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:40.838][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:40.839][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:40.840][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.841][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.842][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:40.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:40.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.851][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:40.851][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:40.852][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.853][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.854][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:40.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:40.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.863][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:40.864][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:40.864][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.865][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.866][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:40.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:40.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.875][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:40.876][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:40.877][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.878][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.879][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:40.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:40.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.888][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:40.889][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:40.890][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.890][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.891][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:40.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:40.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.907][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:40.909][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:40.909][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.910][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.911][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:40.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:40.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.920][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:40.921][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:40.922][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.922][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.923][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:40.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:40.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.932][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:40.933][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:40.934][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.934][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.935][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:40.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:40.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.944][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:40.945][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:40.946][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.946][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.947][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:40.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:40.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.956][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:40.957][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:40.958][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.958][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.959][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:40.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:40.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.968][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:40.969][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:40.970][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.970][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.971][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:40.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:40.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.980][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:40.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:40.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.983][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:40.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:40.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.986][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:40.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:40.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.989][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:40.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:40.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.992][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:40.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:40.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.995][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:40.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:40.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:40.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:40.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.007][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:41.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:41.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.010][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:41.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:41.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:41.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:41.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:41.017][self$createEntryFromContent] Accession numbers: 17813.
biodb.TRACE[2022-04-09 08:05:41.017][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:41.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:41.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.020][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:41.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:41.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.029][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:41.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:41.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:41.033][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:41.034][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:41.035][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:41.036][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:41.037][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:41.038][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:41.038][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:41.039][private$loadEntries] Creating entries from ids [1]: "30109".
biodb.DEBUG[2022-04-09 08:05:41.040][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:41.041][cch$loadFileContent] Trying to load 1 files from cache: [1]: "30109".
biodb.TRACE[2022-04-09 08:05:41.042][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:05:41.043][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:05:41.044][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:41.045][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:05:41.045][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:05:41.046][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:05:41.048][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:41.049][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:41.049][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:41.051][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:41.051][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:41.052][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:41.053][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:41.054][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30109".
biodb.DEBUG[2022-04-09 08:05:41.056][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:05:41.056][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:05:41.057][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30109".
biodb.TRACE[2022-04-09 08:05:41.497][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30109).
biodb.DEBUG[2022-04-09 08:05:41.976][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:05:41.990][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8ed09c4c418a18a426e08dad5ae6a3f9.content"
biodb.TRACE[2022-04-09 08:05:42.009][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8ed09c4c418a18a426e08dad5ae6a3f9.request"
biodb.TRACE[2022-04-09 08:05:42.029][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/30109.xml"
biodb.DEBUG[2022-04-09 08:05:42.035][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:05:42.052][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:42.053][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:42.054][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:42.055][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:42.056][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:42.057][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:42.058][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:42.058][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:42.059][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:42.061][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:42.062][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:42.063][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.063][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:42.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:42.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.073][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:42.074][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:42.075][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.081][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.082][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:42.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:42.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.093][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:42.093][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:42.094][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.095][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.096][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:42.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:42.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.104][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:42.105][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:42.106][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.106][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.107][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:42.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:42.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.116][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:42.117][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:42.118][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.118][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.119][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:42.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:42.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.128][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:42.129][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:42.129][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.130][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.131][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:42.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:42.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.139][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:42.140][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:42.141][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.142][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.142][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:42.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:42.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.151][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.152][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.153][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.153][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.154][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.163][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:42.164][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:42.164][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.165][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.166][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:42.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:42.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.175][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:42.176][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:42.177][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.177][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.178][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:42.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:42.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.188][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:42.188][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:42.189][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.190][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.191][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:42.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:42.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.206][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.211][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.214][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:42.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:42.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.217][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.220][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:42.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:42.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.222][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:42.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:42.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:42.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:42.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.235][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:42.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:42.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.238][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:42.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:42.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.241][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:42.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:42.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:42.243][self$createEntryFromContent] Accession numbers: 30109.
biodb.TRACE[2022-04-09 08:05:42.244][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.247][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.250][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:42.253][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:42.253][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:42.254][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:42.256][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:42.256][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:42.257][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:42.257][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:42.258][private$loadEntries] Creating entries from ids [1]: "33275".
biodb.DEBUG[2022-04-09 08:05:42.259][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:42.260][cch$loadFileContent] Trying to load 1 files from cache: [1]: "33275".
biodb.TRACE[2022-04-09 08:05:42.261][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:05:42.262][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:05:42.263][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:42.263][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:05:42.264][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:05:42.265][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:05:42.267][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:42.268][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:42.268][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:42.270][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:42.270][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:42.271][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:42.272][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:42.272][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33275".
biodb.DEBUG[2022-04-09 08:05:42.274][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:05:42.275][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:05:42.276][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33275".
biodb.TRACE[2022-04-09 08:05:42.926][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33275).
biodb.DEBUG[2022-04-09 08:05:43.402][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:05:43.415][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e7b5440dd739854267ce8eafb6ea36b1.content"
biodb.TRACE[2022-04-09 08:05:43.435][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e7b5440dd739854267ce8eafb6ea36b1.request"
biodb.TRACE[2022-04-09 08:05:43.456][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/33275.xml"
biodb.DEBUG[2022-04-09 08:05:43.472][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:05:43.488][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:43.489][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:43.491][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:43.491][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:43.492][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:43.493][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:43.494][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:43.495][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:43.495][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:43.497][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:43.498][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:43.498][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.499][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.500][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:43.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:43.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.509][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:43.509][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:43.510][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.511][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.512][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:43.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:43.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.520][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:43.521][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:43.522][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.522][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.523][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:43.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:43.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.532][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:43.532][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:43.533][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.534][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.535][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:43.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:43.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.543][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:43.544][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:43.545][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.545][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.546][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:43.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:43.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.555][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:43.556][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:43.556][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.557][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.558][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:43.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:43.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.567][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:43.568][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:43.568][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.569][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.570][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:43.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:43.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.579][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.580][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.586][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.587][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.588][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.599][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:43.600][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:43.600][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.601][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.602][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:43.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:43.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.611][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:43.612][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:43.612][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.613][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.614][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:43.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:43.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.622][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:43.623][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:43.624][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.624][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.625][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:43.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:43.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.634][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.637][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.640][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:43.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:43.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.642][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.645][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:43.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:43.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.648][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:43.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:43.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:43.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:43.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.659][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:43.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:43.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.662][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:43.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:43.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.665][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:43.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:43.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:43.668][self$createEntryFromContent] Accession numbers: 33275.
biodb.TRACE[2022-04-09 08:05:43.669][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.672][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.674][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:43.677][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:43.678][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:43.679][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:43.680][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:43.681][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:43.681][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:43.682][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:43.683][private$loadEntries] Creating entries from ids [1]: "33277".
biodb.DEBUG[2022-04-09 08:05:43.684][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:43.685][cch$loadFileContent] Trying to load 1 files from cache: [1]: "33277".
biodb.TRACE[2022-04-09 08:05:43.686][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:05:43.687][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:05:43.688][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:43.688][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:05:43.689][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:05:43.690][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:05:43.692][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:43.693][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:43.693][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:43.695][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:43.695][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:43.696][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:43.697][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:43.698][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33277".
biodb.DEBUG[2022-04-09 08:05:43.700][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:05:43.700][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:05:43.701][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33277".
biodb.TRACE[2022-04-09 08:05:44.150][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33277).
biodb.DEBUG[2022-04-09 08:05:44.706][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:05:44.729][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9e077bb25f478950bf1d29f1e643c2aa.content"
biodb.TRACE[2022-04-09 08:05:44.751][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9e077bb25f478950bf1d29f1e643c2aa.request"
biodb.TRACE[2022-04-09 08:05:44.771][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/33277.xml"
biodb.DEBUG[2022-04-09 08:05:44.778][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:05:44.793][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:44.794][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:44.796][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:44.796][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:44.797][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:44.798][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:44.799][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:44.800][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:44.800][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:44.802][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:44.803][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:44.804][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.804][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.805][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:44.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:44.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.814][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:44.815][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:44.816][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.817][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.818][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:44.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:44.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.827][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:44.828][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:44.828][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.829][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.830][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:44.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:44.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.839][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:44.840][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:44.841][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.841][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.842][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:44.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:44.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.859][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:44.859][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:44.860][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.861][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.862][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:44.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:44.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.870][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:44.871][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:44.872][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.872][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.873][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:44.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:44.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.882][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:44.882][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:44.883][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.884][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.885][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:44.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:44.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.893][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.894][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.895][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.895][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.896][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.905][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:44.906][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:44.906][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.907][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.908][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:44.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:44.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.917][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:44.917][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:44.918][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.919][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.920][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:44.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:44.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.929][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:44.929][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:44.930][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.931][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.932][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:44.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:44.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.941][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.944][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.947][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:44.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:44.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.950][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.953][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:44.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:44.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.956][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:44.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:44.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.959][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:44.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:44.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.973][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:44.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:44.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:44.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:44.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.979][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:44.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:44.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:44.982][self$createEntryFromContent] Accession numbers: 33277.
biodb.TRACE[2022-04-09 08:05:44.983][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.986][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.988][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:44.991][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:44.992][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:44.993][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:44.994][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:44.995][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:44.995][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:44.996][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:44.997][private$loadEntries] Creating entries from ids [1]: "52421".
biodb.DEBUG[2022-04-09 08:05:44.997][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:44.998][cch$loadFileContent] Trying to load 1 files from cache: [1]: "52421".
biodb.TRACE[2022-04-09 08:05:44.999][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:05:45.000][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:05:45.001][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:45.002][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:05:45.002][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:05:45.003][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:05:45.005][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:45.006][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:45.006][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:45.007][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:45.008][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:45.009][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:45.009][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:45.010][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=52421".
biodb.DEBUG[2022-04-09 08:05:45.012][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:05:45.013][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:05:45.014][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=52421".
biodb.TRACE[2022-04-09 08:05:45.446][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=52421).
biodb.DEBUG[2022-04-09 08:05:45.913][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:05:45.926][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66d999f05cd47f00d9f023cd227b9481.content"
biodb.TRACE[2022-04-09 08:05:45.945][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66d999f05cd47f00d9f023cd227b9481.request"
biodb.TRACE[2022-04-09 08:05:45.964][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/52421.xml"
biodb.DEBUG[2022-04-09 08:05:45.971][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:05:45.988][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:45.993][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:45.997][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:45.998][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:45.999][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:46.000][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:46.001][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:46.002][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:46.003][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:46.004][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:46.005][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:46.006][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.006][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.007][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:46.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:46.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.016][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:46.017][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:46.018][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.019][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.019][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:46.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:46.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.028][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:46.029][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:46.030][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.030][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.031][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:46.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:46.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.040][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:46.041][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:46.041][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.042][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.043][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:46.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:46.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.052][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:46.052][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:46.053][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.054][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.055][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:46.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:46.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.063][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:46.064][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:46.065][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.065][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.066][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:46.067][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.068][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.068][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.069][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:46.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.078][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:46.079][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:46.079][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.080][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.081][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:46.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:46.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.089][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:46.090][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:46.091][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.092][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.093][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:46.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:46.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.102][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:46.102][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:46.103][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.104][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.105][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:46.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:46.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.120][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:46.121][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:46.121][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.122][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.123][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:46.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:46.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.132][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.134][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.137][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:46.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:46.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.140][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:46.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:46.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:46.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:46.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:46.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:46.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.157][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:46.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:46.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.160][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:46.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:46.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.163][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:46.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:46.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:46.165][self$createEntryFromContent] Accession numbers: 52421.
biodb.TRACE[2022-04-09 08:05:46.166][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:46.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:46.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.169][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:46.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:46.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.172][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:46.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:46.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:46.175][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:46.175][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:46.176][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:46.177][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:46.178][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:46.178][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:46.179][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:46.180][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:46.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:46.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.183][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:46.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:46.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.185][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:46.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:46.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:46.188][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:46.190][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:46.190][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:46.191][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:46.192][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:46.193][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:46.193][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:46.194][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:46.195][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.198][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.201][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:46.201][private$selectFields]
biodb.TRACE[2022-04-09 08:05:46.202][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:46.203][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:46.203][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:46.204][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.205][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.206][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.206][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.207][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.208][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.209][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.209][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.210][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:46.211][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:46.211][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.212][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.213][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.214][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.214][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:46.215][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.218][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.221][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.224][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2022-04-09 08:05:46.225][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:46.226][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:46.226][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:46.228][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:46.228][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:46.229][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:46.230][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:46.231][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.239][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.242][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:46.243][private$selectFields]
biodb.TRACE[2022-04-09 08:05:46.244][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:46.244][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:46.245][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:46.246][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.246][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.247][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.248][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.248][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.249][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.250][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.251][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.251][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:46.252][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:46.253][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.253][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.254][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.255][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.255][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:46.256][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.259][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.262][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.265][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-04-09 08:05:46.266][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:46.266][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:46.267][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:46.268][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:46.269][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:46.269][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:46.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:46.271][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.274][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.276][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:46.277][private$selectFields]
biodb.TRACE[2022-04-09 08:05:46.278][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:46.278][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:46.279][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:46.280][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.281][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.281][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.282][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.283][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.283][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.284][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.285][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.285][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:46.286][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:46.287][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.287][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.288][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.289][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.289][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:46.290][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.293][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.296][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.298][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2022-04-09 08:05:46.299][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:46.300][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:05:46.301][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:46.302][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:46.303][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:46.304][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:46.304][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:46.305][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:46.306][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:46.566][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:46.568][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:05:46.569][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:05:46.570][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2*&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-04-09 08:05:47.012][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2*&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-04-09 08:05:47.857][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:05:47.870][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0908e22233c03290fae8e61cbb27ce42.content"
biodb.TRACE[2022-04-09 08:05:47.889][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0908e22233c03290fae8e61cbb27ce42.request"
biodb.DEBUG[2022-04-09 08:05:47.899][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:47.900][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:47.900][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:47.902][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:47.902][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:47.903][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:47.904][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:47.905][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:47.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:47.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.908][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:47.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:47.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.910][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:47.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:47.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:47.913][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:47.914][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:47.915][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:47.916][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:47.917][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:47.917][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:47.918][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:47.919][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:47.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:47.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.922][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:47.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:47.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.925][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:47.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:47.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:47.928][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:47.928][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:47.929][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:47.930][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:47.931][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:47.931][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:47.932][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:47.933][private$loadEntries] Creating entries from ids [1]: "65567".
biodb.DEBUG[2022-04-09 08:05:47.934][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:47.935][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65567".
biodb.TRACE[2022-04-09 08:05:47.936][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:05:47.937][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:05:47.937][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:47.938][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:05:47.939][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:05:47.940][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:05:47.942][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:47.942][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:47.943][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:47.944][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:47.945][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:47.945][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:47.946][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:47.951][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65567".
biodb.DEBUG[2022-04-09 08:05:47.953][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:05:47.954][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:05:47.955][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65567".
biodb.TRACE[2022-04-09 08:05:48.446][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65567).
biodb.DEBUG[2022-04-09 08:05:48.909][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:05:48.931][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7f0d7a30f02eb1e897d8c17a3958aa76.content"
biodb.TRACE[2022-04-09 08:05:48.950][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7f0d7a30f02eb1e897d8c17a3958aa76.request"
biodb.TRACE[2022-04-09 08:05:48.969][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65567.xml"
biodb.DEBUG[2022-04-09 08:05:48.976][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:05:48.992][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:48.992][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:48.994][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:48.994][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:48.995][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:48.996][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:48.997][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:48.998][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:48.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:49.000][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:49.001][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:49.002][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.002][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.003][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:49.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:49.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.012][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:49.013][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:49.013][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.014][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.015][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:49.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:49.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.024][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:49.025][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:49.025][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.026][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.027][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:49.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:49.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.036][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:49.037][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:49.037][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.038][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.039][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:49.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:49.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.052][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:49.052][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:49.053][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.054][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.055][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:49.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:49.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.063][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:49.064][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:49.064][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.065][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.066][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:49.067][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:49.067][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.068][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.069][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:49.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:49.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.077][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:49.078][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:49.079][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.080][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.080][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:49.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:49.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.089][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:49.090][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:49.090][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.091][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.092][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:49.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:49.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.100][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:49.101][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:49.102][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.102][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.103][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:49.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:49.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.112][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:49.112][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:49.113][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.114][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.115][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:49.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:49.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.124][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:49.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:49.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.127][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:49.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:49.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.129][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:49.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:49.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.132][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:49.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:49.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.135][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:49.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:49.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:49.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:49.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.141][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:49.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:49.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.150][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:49.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:49.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:49.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:49.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:49.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:49.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:49.159][self$createEntryFromContent] Accession numbers: 65567.
biodb.TRACE[2022-04-09 08:05:49.160][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:49.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:49.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.167][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:49.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:49.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.170][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:49.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:49.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:49.173][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:49.173][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:49.174][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:49.175][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:49.176][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:49.176][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:49.177][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:49.178][private$loadEntries] Creating entries from ids [1]: "65576".
biodb.DEBUG[2022-04-09 08:05:49.178][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:49.180][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65576".
biodb.TRACE[2022-04-09 08:05:49.180][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:05:49.181][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:05:49.182][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:49.183][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:05:49.184][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:05:49.184][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:05:49.186][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:49.187][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:49.187][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:49.189][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:49.189][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:49.190][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:49.191][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:49.191][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65576".
biodb.DEBUG[2022-04-09 08:05:49.193][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:05:49.194][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:05:49.195][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65576".
biodb.TRACE[2022-04-09 08:05:49.634][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65576).
biodb.DEBUG[2022-04-09 08:05:50.175][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:05:50.189][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/df387492c1d7c1e81f35830307d5d903.content"
biodb.TRACE[2022-04-09 08:05:50.209][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/df387492c1d7c1e81f35830307d5d903.request"
biodb.TRACE[2022-04-09 08:05:50.229][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65576.xml"
biodb.DEBUG[2022-04-09 08:05:50.236][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:05:50.252][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:50.253][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:50.255][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:50.255][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:50.256][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:50.257][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:50.258][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:50.259][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:50.259][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:50.261][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:50.262][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:50.263][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.264][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.265][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:50.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:50.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.274][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:50.275][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:50.276][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.281][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.282][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:50.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:50.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.290][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:50.291][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:50.292][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.292][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.293][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:50.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:50.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.302][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:50.303][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:50.303][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.304][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.305][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:50.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:50.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.313][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:50.314][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:50.315][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.315][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.316][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:50.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:50.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.325][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:50.325][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:50.326][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.327][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.327][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:50.328][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.329][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.330][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.330][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:50.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.339][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:50.340][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:50.340][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.341][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.342][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:50.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:50.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.350][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:50.351][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:50.352][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.352][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.353][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:50.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:50.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.362][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:50.363][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:50.364][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.364][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.365][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:50.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:50.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.374][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:50.375][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:50.375][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.376][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.377][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:50.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:50.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.386][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:50.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:50.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.389][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:50.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:50.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.392][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:50.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:50.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.395][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:50.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:50.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.402][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:50.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:50.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.405][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:50.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:50.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:50.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:50.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.416][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:50.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:50.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:50.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:50.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.422][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:50.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:50.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:50.425][self$createEntryFromContent] Accession numbers: 65576.
biodb.TRACE[2022-04-09 08:05:50.426][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:50.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:50.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.428][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:50.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:50.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.431][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:50.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:50.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:50.434][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:50.435][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:50.435][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:50.437][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:50.437][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:50.438][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:50.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:50.440][private$loadEntries] Creating entries from ids [1]: "66352".
biodb.DEBUG[2022-04-09 08:05:50.440][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:50.442][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66352".
biodb.TRACE[2022-04-09 08:05:50.442][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:05:50.443][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:05:50.444][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:50.445][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:05:50.446][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:05:50.446][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:05:50.448][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:50.449][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:50.449][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:50.451][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:50.451][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:50.452][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:50.453][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:50.454][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66352".
biodb.DEBUG[2022-04-09 08:05:50.456][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:05:50.456][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:05:50.457][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66352".
biodb.TRACE[2022-04-09 08:05:50.906][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66352).
biodb.DEBUG[2022-04-09 08:05:51.382][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:05:51.395][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/45b0333aa11c1e7eb4af7d2d82f453d6.content"
biodb.TRACE[2022-04-09 08:05:51.415][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/45b0333aa11c1e7eb4af7d2d82f453d6.request"
biodb.TRACE[2022-04-09 08:05:51.434][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66352.xml"
biodb.DEBUG[2022-04-09 08:05:51.441][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:05:51.464][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:51.465][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:51.467][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:51.467][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:51.468][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:51.469][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:51.470][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:51.471][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:51.471][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:51.473][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:51.474][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:51.474][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.475][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.476][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:51.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:51.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.485][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:51.486][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:51.486][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.487][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.488][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:51.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:51.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.496][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:51.497][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:51.498][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.499][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.499][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:51.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:51.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.508][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:51.509][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:51.509][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.510][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.511][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:51.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:51.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.519][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:51.520][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:51.521][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.521][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.522][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:51.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:51.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.531][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:51.531][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:51.532][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.533][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.534][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:51.534][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:51.535][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.536][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.537][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:51.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:51.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.545][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.546][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.547][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.547][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.548][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.557][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:51.558][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:51.559][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.559][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.560][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:51.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:51.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.569][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:51.570][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:51.571][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.571][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.572][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:51.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:51.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.585][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:51.586][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:51.587][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.587][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.588][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:51.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:51.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.596][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:51.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:51.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.599][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:51.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:51.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.602][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:51.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:51.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.605][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:51.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:51.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.608][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:51.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:51.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:51.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:51.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.614][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:51.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:51.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:51.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:51.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.625][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:51.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:51.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.628][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:51.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:51.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:51.631][self$createEntryFromContent] Accession numbers: 66352.
biodb.TRACE[2022-04-09 08:05:51.632][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.634][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.637][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:51.640][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:51.641][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:51.641][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:51.642][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:51.643][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:51.644][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:51.644][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:51.645][private$loadEntries] Creating entries from ids [1]: "67567".
biodb.DEBUG[2022-04-09 08:05:51.646][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:51.647][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67567".
biodb.TRACE[2022-04-09 08:05:51.648][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:05:51.649][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:05:51.650][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:51.650][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:05:51.651][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:05:51.652][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:05:51.654][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:51.654][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:51.655][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:51.656][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:51.657][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:51.657][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:51.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:51.659][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67567".
biodb.DEBUG[2022-04-09 08:05:51.661][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:05:51.662][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:05:51.663][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67567".
biodb.TRACE[2022-04-09 08:05:52.106][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67567).
biodb.DEBUG[2022-04-09 08:05:52.619][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:05:52.633][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef82f494f4fdd41c2bb93aa0869ad73e.content"
biodb.TRACE[2022-04-09 08:05:52.654][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef82f494f4fdd41c2bb93aa0869ad73e.request"
biodb.TRACE[2022-04-09 08:05:52.682][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67567.xml"
biodb.DEBUG[2022-04-09 08:05:52.689][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:05:52.705][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:52.706][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:52.708][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:52.708][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:52.709][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:52.710][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:52.711][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:52.712][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:52.712][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:52.714][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:52.715][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:52.716][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.716][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.717][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:52.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:52.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.726][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:52.727][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:52.728][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.728][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.729][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:52.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:52.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.738][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:52.739][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:52.740][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.741][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.742][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:52.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:52.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.751][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:52.751][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:52.752][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.753][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.754][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:52.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:52.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.763][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:52.764][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:52.764][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.765][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.766][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:52.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:52.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.776][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:52.776][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:52.777][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.778][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.779][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:52.780][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:52.781][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.781][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.782][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:52.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:52.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.797][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:52.798][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:52.798][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.799][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.800][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:52.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:52.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.809][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:52.809][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:52.810][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.811][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.812][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:52.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:52.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.821][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:52.822][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:52.822][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.823][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.824][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:52.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:52.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.833][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:52.834][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:52.834][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.835][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.836][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:52.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:52.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.845][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:52.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:52.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.848][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:52.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:52.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.851][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:52.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:52.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.853][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:52.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:52.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.856][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:52.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:52.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.859][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:52.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:52.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.862][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:52.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:52.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.871][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:52.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:52.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:52.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:52.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.877][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:52.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:52.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:52.880][self$createEntryFromContent] Accession numbers: 67567.
biodb.TRACE[2022-04-09 08:05:52.881][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:52.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:52.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.884][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:52.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:52.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.887][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:52.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:52.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:52.890][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:52.891][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:52.891][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:52.893][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:52.893][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:52.894][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:52.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:52.896][private$loadEntries] Creating entries from ids [1]: "67693".
biodb.DEBUG[2022-04-09 08:05:52.896][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:52.898][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67693".
biodb.TRACE[2022-04-09 08:05:52.899][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:05:52.900][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:05:52.900][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:52.901][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:05:52.902][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:05:52.903][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:05:52.905][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:52.906][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:52.906][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:52.908][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:52.908][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:52.909][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:52.910][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:52.911][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67693".
biodb.DEBUG[2022-04-09 08:05:52.913][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:05:52.913][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:05:52.915][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67693".
biodb.TRACE[2022-04-09 08:05:53.366][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67693).
biodb.DEBUG[2022-04-09 08:05:53.832][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:05:53.846][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/007181120197262f6a39eff57d7aa092.content"
biodb.TRACE[2022-04-09 08:05:53.874][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/007181120197262f6a39eff57d7aa092.request"
biodb.TRACE[2022-04-09 08:05:53.894][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67693.xml"
biodb.DEBUG[2022-04-09 08:05:53.901][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:05:53.918][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:53.919][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:53.920][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:53.921][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:53.921][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:53.923][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:53.924][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:53.924][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:53.925][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:53.927][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:53.928][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:53.928][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.929][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.930][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:53.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:53.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.939][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:53.940][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:53.941][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.941][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.942][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:53.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:53.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.952][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:53.953][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:53.953][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.954][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.955][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:53.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:53.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.965][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:53.966][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:53.966][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.967][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.968][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:53.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:53.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.982][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:53.983][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:53.984][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.984][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.985][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:53.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:53.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.994][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:53.995][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:53.996][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.997][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.998][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:53.998][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:53.999][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.004][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.006][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:54.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:54.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.018][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:54.019][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:54.020][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.021][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.022][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:54.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:54.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.032][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:54.032][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:54.033][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.034][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.035][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:54.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:54.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.045][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:54.046][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:54.047][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.047][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.048][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:54.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:54.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.058][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:54.059][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:54.060][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.060][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.062][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:54.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:54.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.072][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:54.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:54.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.075][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:54.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:54.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.078][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:54.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:54.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.082][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:54.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:54.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.085][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:54.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:54.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:54.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:54.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.092][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:54.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:54.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.103][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:54.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:54.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:54.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:54.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:54.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:54.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:54.113][self$createEntryFromContent] Accession numbers: 67693.
biodb.TRACE[2022-04-09 08:05:54.114][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:54.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:54.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.127][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:54.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:54.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.130][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:54.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:54.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:54.133][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:54.134][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:54.135][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:54.136][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:54.137][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:54.138][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:54.138][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:54.139][private$loadEntries] Creating entries from ids [1]: "67700".
biodb.DEBUG[2022-04-09 08:05:54.140][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:54.141][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67700".
biodb.TRACE[2022-04-09 08:05:54.142][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:05:54.143][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:05:54.144][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:54.145][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:05:54.146][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:05:54.147][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:05:54.149][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:54.150][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:54.150][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:54.152][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:54.152][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:54.153][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:54.154][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:54.155][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67700".
biodb.DEBUG[2022-04-09 08:05:54.157][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:05:54.158][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:05:54.159][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67700".
biodb.TRACE[2022-04-09 08:05:54.626][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67700).
biodb.DEBUG[2022-04-09 08:05:55.106][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:05:55.120][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e41afa9432b74fa2b22a0c53e84c091a.content"
biodb.TRACE[2022-04-09 08:05:55.139][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e41afa9432b74fa2b22a0c53e84c091a.request"
biodb.TRACE[2022-04-09 08:05:55.158][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67700.xml"
biodb.DEBUG[2022-04-09 08:05:55.165][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:05:55.182][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:55.183][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:55.185][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:55.185][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:55.186][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:55.187][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:55.188][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:55.189][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:55.190][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:55.191][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:55.192][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:55.193][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.194][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.195][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:55.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:55.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.208][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:55.209][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:55.210][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.210][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.211][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:55.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:55.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.220][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:55.220][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:55.221][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.222][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.223][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:55.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:55.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.231][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:55.232][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:55.233][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.234][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.234][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:55.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:55.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.243][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:55.244][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:55.244][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.245][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.246][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:55.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:55.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.254][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:55.255][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:55.256][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.257][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.257][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:55.258][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:55.259][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.259][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.260][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:55.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:55.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.269][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:55.270][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:55.270][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.271][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.272][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:55.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:55.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.281][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:55.281][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:55.282][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.283][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.284][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:55.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:55.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.293][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:55.293][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:55.294][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.295][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.296][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:55.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:55.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.305][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:55.306][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:55.306][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.307][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.308][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:55.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:55.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.317][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:55.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:55.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.329][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:55.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:55.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:55.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:55.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.335][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:55.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:55.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:55.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:55.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:55.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:55.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.343][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:55.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:55.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.353][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:55.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:55.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.356][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:55.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:55.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.359][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:55.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:55.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:55.362][self$createEntryFromContent] Accession numbers: 67700.
biodb.TRACE[2022-04-09 08:05:55.362][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:55.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:55.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.365][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:55.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:55.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.368][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:55.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:55.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:55.371][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:55.372][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:55.372][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:55.374][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:55.374][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:55.375][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:55.376][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:55.376][private$loadEntries] Creating entries from ids [1]: "67701".
biodb.DEBUG[2022-04-09 08:05:55.377][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:55.378][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67701".
biodb.TRACE[2022-04-09 08:05:55.379][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:05:55.380][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:05:55.381][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:55.381][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:05:55.382][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:05:55.383][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:05:55.385][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:55.385][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:55.386][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:55.387][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:55.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:55.389][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:55.389][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:55.390][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67701".
biodb.DEBUG[2022-04-09 08:05:55.392][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:05:55.393][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:05:55.394][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67701".
biodb.TRACE[2022-04-09 08:05:55.854][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67701).
biodb.DEBUG[2022-04-09 08:05:56.458][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:05:56.471][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ca9443fe11bfb8fe207e2797d18dbba3.content"
biodb.TRACE[2022-04-09 08:05:56.490][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ca9443fe11bfb8fe207e2797d18dbba3.request"
biodb.TRACE[2022-04-09 08:05:56.510][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67701.xml"
biodb.DEBUG[2022-04-09 08:05:56.517][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:05:56.541][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:56.542][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:56.543][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:56.544][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:56.544][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:56.546][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:56.546][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:56.547][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:56.548][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:56.549][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:56.550][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:56.551][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.551][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.552][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:56.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:56.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.561][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:56.562][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:56.563][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.563][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.564][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:56.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:56.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.573][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:56.574][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:56.574][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.575][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.576][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:56.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:56.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.585][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:56.585][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:56.586][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.587][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.588][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:56.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:56.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.596][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:56.597][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:56.597][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.598][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.599][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:56.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:56.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.607][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:56.608][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:56.609][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.610][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.611][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:56.611][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:56.612][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.613][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.614][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:56.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:56.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.622][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:56.623][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:56.624][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.625][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.626][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:56.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:56.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.635][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:56.635][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:56.636][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.637][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.638][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:56.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:56.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.651][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:56.653][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:56.653][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.654][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.655][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:56.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:56.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.664][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:56.665][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:56.665][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.666][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.667][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:56.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:56.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.675][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:56.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:56.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.678][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:56.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:56.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.681][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:56.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:56.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.684][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:56.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:56.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.687][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:56.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:56.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.689][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:56.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:56.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.692][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:56.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:56.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:56.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:56.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.703][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:56.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:56.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.706][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:56.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:56.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:56.709][self$createEntryFromContent] Accession numbers: 67701.
biodb.TRACE[2022-04-09 08:05:56.710][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:56.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:56.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.713][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:56.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:56.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.716][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:56.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:56.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:56.718][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:56.719][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:56.720][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:56.721][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:56.722][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:56.722][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:56.723][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:56.724][private$loadEntries] Creating entries from ids [1]: "67705".
biodb.DEBUG[2022-04-09 08:05:56.725][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:56.726][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67705".
biodb.TRACE[2022-04-09 08:05:56.727][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:05:56.728][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:05:56.728][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:56.729][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:05:56.730][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:05:56.731][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:05:56.733][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:56.733][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:56.734][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:56.735][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:56.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:56.737][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:56.737][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:56.738][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67705".
biodb.DEBUG[2022-04-09 08:05:56.740][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:05:56.741][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:05:56.742][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67705".
biodb.TRACE[2022-04-09 08:05:57.201][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67705).
biodb.DEBUG[2022-04-09 08:05:57.758][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:05:57.771][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/19583a5be2f48ffe4ea86ed642cbc7df.content"
biodb.TRACE[2022-04-09 08:05:57.792][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/19583a5be2f48ffe4ea86ed642cbc7df.request"
biodb.TRACE[2022-04-09 08:05:57.820][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67705.xml"
biodb.DEBUG[2022-04-09 08:05:57.826][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:05:57.842][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:57.843][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:57.844][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:57.845][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:57.846][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:57.847][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:57.848][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:57.848][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:57.849][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:57.851][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:57.851][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:57.852][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.853][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.854][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:57.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:57.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.862][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:57.863][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:57.864][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.864][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.865][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:57.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:57.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.874][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:57.875][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:57.875][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.876][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.877][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:57.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:57.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.885][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:57.886][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:57.887][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.888][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.888][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:57.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:57.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.897][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:57.898][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:57.899][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.899][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.900][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:57.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:57.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.909][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:57.910][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:57.911][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.911][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.912][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:57.913][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:57.914][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.915][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.915][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:57.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:57.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.930][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:57.930][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:57.931][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.932][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.933][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:57.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:57.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.941][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:57.942][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:57.942][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.943][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.944][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:57.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:57.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.953][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:57.953][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:57.954][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.955][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.955][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:57.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:57.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.964][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:57.965][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:57.965][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.966][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.967][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:57.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:57.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.975][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:57.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:57.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.978][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:57.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:57.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.981][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:57.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:57.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.983][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:57.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:57.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.986][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:57.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:57.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.989][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:57.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:57.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.992][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:57.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:57.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:58.000][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:58.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:58.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:58.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:58.003][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:58.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:58.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:58.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:58.006][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:58.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:58.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:58.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:58.009][self$createEntryFromContent] Accession numbers: 67705.
biodb.TRACE[2022-04-09 08:05:58.010][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:58.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:58.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:58.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:58.012][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:58.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:58.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:58.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:58.015][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:58.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:58.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:58.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:58.018][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:58.019][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:58.020][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:58.021][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:58.022][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:58.022][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:58.023][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:58.024][private$loadEntries] Creating entries from ids [1]: "75265".
biodb.DEBUG[2022-04-09 08:05:58.025][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:58.026][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75265".
biodb.TRACE[2022-04-09 08:05:58.027][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:05:58.028][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:05:58.028][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:58.029][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:05:58.030][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:05:58.031][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:05:58.033][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:58.033][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:58.034][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:58.035][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:58.036][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:58.037][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:58.037][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:58.038][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75265".
biodb.DEBUG[2022-04-09 08:05:58.040][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:05:58.041][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:05:58.042][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75265".
biodb.TRACE[2022-04-09 08:05:58.547][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75265).
biodb.DEBUG[2022-04-09 08:05:59.026][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:05:59.049][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d89a3a12f8b9f5e8203e72f55b0016ed.content"
biodb.TRACE[2022-04-09 08:05:59.069][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d89a3a12f8b9f5e8203e72f55b0016ed.request"
biodb.TRACE[2022-04-09 08:05:59.089][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75265.xml"
biodb.DEBUG[2022-04-09 08:05:59.096][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:05:59.112][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:59.113][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:59.114][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:59.115][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:59.116][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:59.117][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:59.118][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:59.118][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:59.119][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:59.121][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:59.121][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:59.122][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:59.123][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:59.124][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:59.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:59.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:59.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:59.133][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:59.134][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:59.134][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:59.135][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:59.136][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:59.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:59.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:59.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:59.145][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:59.146][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:59.147][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:59.147][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:59.148][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:59.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:59.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:59.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:59.157][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:59.158][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:59.159][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:59.159][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:59.160][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:59.161][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:59.162][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:59.163][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:59.164][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:59.169][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:59.170][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:59.171][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:59.172][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:59.172][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:59.173][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:59.174][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:59.175][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:59.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:59.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:59.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:59.183][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:59.184][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:59.185][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:59.185][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:59.186][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:59.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:59.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:59.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:59.195][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:59.196][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:59.197][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:59.197][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:59.198][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:59.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:59.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:59.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:59.207][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:59.208][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:59.209][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:59.209][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:59.210][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:59.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:59.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:59.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:59.219][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:59.220][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:59.220][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:59.221][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:59.222][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:59.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:59.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:59.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:59.231][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:59.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:59.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:59.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:59.234][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:59.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:59.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:59.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:59.237][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:59.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:59.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:59.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:59.240][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:59.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:59.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:59.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:59.242][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:59.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:59.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:59.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:59.245][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:59.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:59.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:59.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:59.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:59.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:59.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:59.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:59.257][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:59.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:59.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:59.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:59.260][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:59.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:59.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:59.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:59.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:59.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:59.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:59.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:59.266][self$createEntryFromContent] Accession numbers: 75265.
biodb.TRACE[2022-04-09 08:05:59.267][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:59.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:59.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:59.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:59.271][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:59.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:59.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:59.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:59.274][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:59.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:59.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:59.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:59.277][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:59.278][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:59.278][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:59.280][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:59.281][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:59.282][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:59.282][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:59.283][private$loadEntries] Creating entries from ids [1]: "77370".
biodb.DEBUG[2022-04-09 08:05:59.284][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:59.285][cch$loadFileContent] Trying to load 1 files from cache: [1]: "77370".
biodb.TRACE[2022-04-09 08:05:59.286][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:05:59.287][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:05:59.288][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:59.289][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:05:59.294][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:05:59.295][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:05:59.298][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:59.299][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:59.299][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:59.301][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:59.301][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:59.302][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:59.303][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:59.304][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77370".
biodb.DEBUG[2022-04-09 08:05:59.306][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:05:59.307][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:05:59.308][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77370".
biodb.TRACE[2022-04-09 08:05:59.746][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77370).
biodb.DEBUG[2022-04-09 08:06:00.212][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:06:00.235][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c00fcc12163fc12434466e6319d4b9a8.content"
biodb.TRACE[2022-04-09 08:06:00.255][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c00fcc12163fc12434466e6319d4b9a8.request"
biodb.TRACE[2022-04-09 08:06:00.274][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77370.xml"
biodb.DEBUG[2022-04-09 08:06:00.281][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:06:00.297][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:00.298][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:00.300][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:00.300][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:00.301][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:00.302][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:00.303][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:00.304][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:00.304][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:00.306][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:00.307][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:00.308][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.309][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:00.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:00.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.319][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:00.320][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:00.321][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.322][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.323][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:00.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:00.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.332][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:00.333][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:00.334][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.334][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.335][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:00.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:00.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.350][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:00.351][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:00.352][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.352][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.353][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:00.354][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:00.355][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.355][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.356][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:00.357][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:00.358][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.358][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.359][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:00.360][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:00.361][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.361][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.362][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:00.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:00.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.371][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:00.372][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:00.373][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.373][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.374][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:00.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:00.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.383][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:00.384][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:00.384][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.385][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.386][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:00.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:00.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.395][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:00.396][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:00.396][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.397][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.398][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:00.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:00.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.406][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:00.407][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:00.408][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.409][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.410][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:00.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:00.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.419][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:00.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:00.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.422][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:00.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:00.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.425][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:00.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:00.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.428][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:00.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:00.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.431][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:00.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:00.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.434][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:00.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:00.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.437][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:00.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:00.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.447][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:00.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:00.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:00.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:00.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:00.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:00.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:00.456][self$createEntryFromContent] Accession numbers: 77370.
biodb.TRACE[2022-04-09 08:06:00.457][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:00.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:00.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.460][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:00.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:00.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.463][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:00.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:00.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:00.472][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:00.473][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:00.473][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:00.475][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:00.475][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:00.476][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:00.477][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:00.478][private$loadEntries] Creating entries from ids [1]: "79074".
biodb.DEBUG[2022-04-09 08:06:00.478][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:00.480][cch$loadFileContent] Trying to load 1 files from cache: [1]: "79074".
biodb.TRACE[2022-04-09 08:06:00.481][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:06:00.481][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:06:00.482][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:00.483][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:06:00.484][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:06:00.485][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:06:00.487][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:00.488][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:00.488][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:00.490][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:00.490][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:00.491][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:00.492][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:00.493][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79074".
biodb.DEBUG[2022-04-09 08:06:00.495][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:06:00.496][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:06:00.497][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79074".
biodb.TRACE[2022-04-09 08:06:00.973][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79074).
biodb.DEBUG[2022-04-09 08:06:01.763][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:06:01.776][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9d103521a9057f87b1d7f6dac467847d.content"
biodb.TRACE[2022-04-09 08:06:01.796][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9d103521a9057f87b1d7f6dac467847d.request"
biodb.TRACE[2022-04-09 08:06:01.816][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/79074.xml"
biodb.DEBUG[2022-04-09 08:06:01.823][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:06:01.839][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:01.840][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:01.841][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:01.842][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:01.842][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:01.844][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:01.844][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:01.845][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:01.846][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:01.848][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:01.849][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:01.849][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.850][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.851][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:01.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:01.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.860][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:01.861][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:01.862][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.862][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.863][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:01.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:01.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.877][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:01.878][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:01.879][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.880][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.880][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:01.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:01.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.889][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:01.890][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:01.890][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.891][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.892][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:01.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:01.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.901][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:01.902][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:01.902][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.903][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.904][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:01.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:01.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.912][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:01.913][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:01.914][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.915][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.915][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:01.916][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:01.917][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.918][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.918][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:01.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:01.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.927][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:01.928][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:01.928][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.929][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.930][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:01.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:01.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.939][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:01.939][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:01.940][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.941][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.942][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:01.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:01.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.950][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:01.951][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:01.952][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.952][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.953][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:01.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:01.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.962][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:01.963][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:01.964][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.964][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.965][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:01.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:01.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.974][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:01.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:01.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.977][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:01.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:01.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:01.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:01.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.983][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:01.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:01.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.991][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:01.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:01.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.994][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:01.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:01.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.997][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:01.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:01.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.006][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:02.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:02.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.009][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:02.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:02.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.012][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:02.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:02.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:02.014][self$createEntryFromContent] Accession numbers: 79074.
biodb.TRACE[2022-04-09 08:06:02.015][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:02.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:02.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.018][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:02.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:02.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.021][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:02.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:02.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:02.024][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:02.025][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:02.025][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:02.027][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:02.027][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:02.028][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:02.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:02.029][private$loadEntries] Creating entries from ids [1]: "79302".
biodb.DEBUG[2022-04-09 08:06:02.030][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:02.031][cch$loadFileContent] Trying to load 1 files from cache: [1]: "79302".
biodb.TRACE[2022-04-09 08:06:02.032][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:06:02.033][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:06:02.034][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:02.035][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:06:02.035][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:06:02.036][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:06:02.038][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:02.039][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:02.039][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:02.041][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:02.041][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:02.042][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:02.043][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:02.044][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79302".
biodb.DEBUG[2022-04-09 08:06:02.046][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:06:02.046][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:06:02.047][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79302".
biodb.TRACE[2022-04-09 08:06:02.482][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79302).
biodb.DEBUG[2022-04-09 08:06:02.950][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:06:02.963][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/db109891c430ecee6c4d31019e936bb4.content"
biodb.TRACE[2022-04-09 08:06:02.983][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/db109891c430ecee6c4d31019e936bb4.request"
biodb.TRACE[2022-04-09 08:06:03.002][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/79302.xml"
biodb.DEBUG[2022-04-09 08:06:03.010][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:06:03.033][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:03.034][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:03.035][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:03.036][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:03.037][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:03.038][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:03.039][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:03.039][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:03.040][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:03.041][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:03.042][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:03.043][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:03.044][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:03.045][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:03.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:03.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:03.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:03.054][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:03.054][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:03.055][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:03.056][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:03.057][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:03.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:03.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:03.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:03.065][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:03.066][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:03.067][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:03.067][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:03.068][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:03.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:03.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:03.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:03.077][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:03.078][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:03.078][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:03.079][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:03.080][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:03.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:03.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:03.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:03.089][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:03.089][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:03.090][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:03.091][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:03.092][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:03.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:03.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:03.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:03.100][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:03.101][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:03.102][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:03.102][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:03.103][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:03.104][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:03.105][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:03.105][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:03.106][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:03.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:03.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:03.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:03.115][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:03.116][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:03.117][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:03.117][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:03.118][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:03.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:03.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:03.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:03.127][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:03.128][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:03.129][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:03.129][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:03.130][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:03.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:03.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:03.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:03.144][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:03.145][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:03.146][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:03.147][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:03.148][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:03.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:03.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:03.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:03.156][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:03.157][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:03.158][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:03.159][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:03.159][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:03.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:03.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:03.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:03.168][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:03.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:03.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:03.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:03.171][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:03.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:03.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:03.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:03.174][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:03.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:03.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:03.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:03.176][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:03.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:03.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:03.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:03.179][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:03.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:03.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:03.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:03.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:03.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:03.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:03.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:03.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:03.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:03.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:03.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:03.193][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:03.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:03.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:03.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:03.196][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:03.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:03.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:03.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:03.199][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:03.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:03.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:03.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:03.202][self$createEntryFromContent] Accession numbers: 79302.
biodb.TRACE[2022-04-09 08:06:03.202][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:03.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:03.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:03.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:03.205][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:03.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:03.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:03.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:03.208][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:03.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:03.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:03.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:03.211][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:03.211][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:03.212][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:03.213][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:03.214][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:03.215][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:03.215][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:03.216][private$loadEntries] Creating entries from ids [1]: "84164".
biodb.DEBUG[2022-04-09 08:06:03.217][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:03.218][cch$loadFileContent] Trying to load 1 files from cache: [1]: "84164".
biodb.TRACE[2022-04-09 08:06:03.219][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:06:03.220][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:06:03.220][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:03.221][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:06:03.222][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:06:03.223][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:06:03.225][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:03.225][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:03.226][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:03.227][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:03.228][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:03.229][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:03.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:03.230][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=84164".
biodb.DEBUG[2022-04-09 08:06:03.232][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:06:03.233][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:06:03.234][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=84164".
biodb.TRACE[2022-04-09 08:06:03.675][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=84164).
biodb.DEBUG[2022-04-09 08:06:04.236][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:06:04.250][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5878d01d3db7a255abcfdf35c60dd985.content"
biodb.TRACE[2022-04-09 08:06:04.272][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5878d01d3db7a255abcfdf35c60dd985.request"
biodb.TRACE[2022-04-09 08:06:04.308][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/84164.xml"
biodb.DEBUG[2022-04-09 08:06:04.316][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:06:04.332][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:04.333][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:04.335][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:04.335][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:04.336][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:04.337][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:04.338][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:04.339][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:04.339][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:04.341][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:04.342][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:04.343][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:04.343][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:04.344][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:04.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:04.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:04.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:04.353][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:04.354][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:04.355][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:04.356][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:04.357][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:04.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:04.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:04.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:04.365][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:04.366][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:04.367][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:04.368][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:04.369][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:04.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:04.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:04.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:04.378][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:04.379][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:04.379][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:04.380][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:04.381][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:04.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:04.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:04.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:04.390][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:04.391][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:04.392][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:04.392][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:04.393][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:04.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:04.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:04.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:04.402][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:04.403][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:04.404][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:04.405][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:04.405][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:04.406][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:04.407][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:04.408][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:04.414][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:04.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:04.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:04.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:04.424][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:04.425][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:04.425][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:04.426][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:04.427][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:04.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:04.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:04.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:04.436][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:04.437][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:04.438][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:04.438][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:04.439][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:04.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:04.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:04.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:04.448][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:04.449][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:04.450][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:04.451][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:04.452][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:04.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:04.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:04.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:04.461][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:04.461][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:04.462][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:04.463][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:04.464][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:04.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:04.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:04.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:04.473][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:04.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:04.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:04.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:04.475][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:04.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:04.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:04.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:04.478][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:04.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:04.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:04.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:04.481][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:04.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:04.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:04.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:04.484][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:04.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:04.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:04.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:04.487][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:04.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:04.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:04.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:04.490][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:04.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:04.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:04.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:04.500][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:04.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:04.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:04.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:04.503][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:04.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:04.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:04.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:04.506][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:04.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:04.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:04.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:04.509][self$createEntryFromContent] Accession numbers: 84164.
biodb.TRACE[2022-04-09 08:06:04.510][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:04.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:04.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:04.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:04.513][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:04.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:04.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:04.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:04.516][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:04.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:04.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:04.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:04.520][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:04.520][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:04.521][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:04.523][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:04.523][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:04.524][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:04.525][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:04.526][private$loadEntries] Creating entries from ids [1]: "132314".
biodb.DEBUG[2022-04-09 08:06:04.526][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:04.528][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132314".
biodb.TRACE[2022-04-09 08:06:04.529][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:06:04.530][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:06:04.530][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:04.531][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:06:04.532][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:06:04.533][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:06:04.535][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:04.536][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:04.536][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:04.538][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:04.544][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:04.545][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:04.546][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:04.547][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132314".
biodb.DEBUG[2022-04-09 08:06:04.549][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:06:04.550][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:06:04.551][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132314".
biodb.TRACE[2022-04-09 08:06:04.987][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132314).
biodb.DEBUG[2022-04-09 08:06:05.478][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:06:05.502][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/faff8e4827734119a684907f214879a2.content"
biodb.TRACE[2022-04-09 08:06:05.525][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/faff8e4827734119a684907f214879a2.request"
biodb.TRACE[2022-04-09 08:06:05.546][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132314.xml"
biodb.DEBUG[2022-04-09 08:06:05.553][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:06:05.570][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:05.572][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:05.573][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:05.574][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:05.575][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:05.576][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:05.577][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:05.578][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:05.578][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:05.580][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:05.581][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:05.582][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:05.583][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:05.584][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:05.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:05.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:05.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:05.594][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:05.595][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:05.596][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:05.596][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:05.598][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:05.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:05.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:05.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:05.607][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:05.608][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:05.609][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:05.610][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:05.611][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:05.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:05.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:05.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:05.621][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:05.627][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:05.628][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:05.629][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:05.630][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:05.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:05.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:05.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:05.640][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:05.641][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:05.641][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:05.642][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:05.643][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:05.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:05.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:05.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:05.653][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:05.654][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:05.654][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:05.655][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:05.656][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:05.657][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:05.658][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:05.658][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:05.659][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:05.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:05.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:05.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:05.669][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:05.670][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:05.671][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:05.671][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:05.673][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:05.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:05.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:05.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:05.682][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:05.683][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:05.683][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:05.684][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:05.685][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:05.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:05.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:05.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:05.695][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:05.695][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:05.696][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:05.697][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:05.698][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:05.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:05.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:05.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:05.707][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:05.708][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:05.709][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:05.709][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:05.710][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:05.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:05.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:05.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:05.720][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:05.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:05.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:05.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:05.723][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:05.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:05.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:05.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:05.726][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:05.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:05.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:05.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:05.729][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:05.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:05.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:05.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:05.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:05.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:05.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:05.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:05.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:05.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:05.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:05.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:05.738][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:05.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:05.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:05.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:05.749][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:05.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:05.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:05.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:05.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:05.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:05.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:05.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:05.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:05.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:05.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:05.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:05.763][self$createEntryFromContent] Accession numbers: 132314.
biodb.TRACE[2022-04-09 08:06:05.764][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:05.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:05.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:05.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:05.767][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:05.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:05.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:05.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:05.770][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:05.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:05.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:05.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:05.773][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:05.774][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:05.774][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:05.776][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:05.777][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:05.777][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:05.778][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:05.779][private$loadEntries] Creating entries from ids [1]: "132338".
biodb.DEBUG[2022-04-09 08:06:05.780][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:05.781][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132338".
biodb.TRACE[2022-04-09 08:06:05.782][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:06:05.783][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:06:05.784][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:05.785][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:06:05.786][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:06:05.786][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:06:05.788][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:05.789][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:05.790][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:05.791][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:05.792][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:05.793][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:05.793][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:05.794][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132338".
biodb.DEBUG[2022-04-09 08:06:05.797][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:06:05.797][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:06:05.798][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132338".
biodb.TRACE[2022-04-09 08:06:06.243][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132338).
biodb.DEBUG[2022-04-09 08:06:06.867][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:06:06.881][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ab2b9171a775a690a32a30e73cf2a1c.content"
biodb.TRACE[2022-04-09 08:06:06.901][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ab2b9171a775a690a32a30e73cf2a1c.request"
biodb.TRACE[2022-04-09 08:06:06.922][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132338.xml"
biodb.DEBUG[2022-04-09 08:06:06.929][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:06:06.947][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:06.948][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:06.949][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:06.950][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:06.950][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:06.952][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:06.953][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:06.953][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:06.954][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:06.956][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:06.957][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:06.957][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.958][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.959][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:06.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:06.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.974][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:06.975][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:06.976][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.977][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.978][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:06.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:06.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.986][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:06.987][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:06.988][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.989][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.990][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:06.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:06.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.999][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:07.000][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:07.000][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.001][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.002][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:07.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:07.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.011][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:07.011][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:07.012][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.013][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.014][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:07.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:07.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.023][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:07.023][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:07.024][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.025][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.026][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:07.027][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:07.027][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.028][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.029][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:07.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:07.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.038][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:07.038][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:07.039][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.040][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.041][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:07.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:07.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.050][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:07.051][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:07.051][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.052][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.053][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:07.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:07.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.062][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:07.063][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:07.064][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.065][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.066][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:07.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:07.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.075][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:07.076][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:07.077][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.078][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.079][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:07.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:07.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.093][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:07.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:07.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.097][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:07.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:07.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:07.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:07.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.103][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:07.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:07.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:07.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:07.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.109][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:07.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:07.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.112][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:07.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:07.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.122][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:07.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:07.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.125][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:07.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:07.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:07.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:07.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:07.131][self$createEntryFromContent] Accession numbers: 132338.
biodb.TRACE[2022-04-09 08:06:07.132][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:07.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:07.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.135][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:07.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:07.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.138][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:07.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:07.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:07.141][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:07.141][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:07.142][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:07.144][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:07.144][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:07.145][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:07.146][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:07.146][private$loadEntries] Creating entries from ids [1]: "139019".
biodb.DEBUG[2022-04-09 08:06:07.147][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:07.148][cch$loadFileContent] Trying to load 1 files from cache: [1]: "139019".
biodb.TRACE[2022-04-09 08:06:07.149][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:06:07.150][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:06:07.151][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:07.152][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:06:07.153][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:06:07.153][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:06:07.155][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:07.156][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:07.157][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:07.158][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:07.159][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:07.160][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:07.160][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:07.161][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139019".
biodb.DEBUG[2022-04-09 08:06:07.163][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:06:07.164][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:06:07.165][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139019".
biodb.TRACE[2022-04-09 08:06:07.603][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139019).
biodb.DEBUG[2022-04-09 08:06:08.071][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:06:08.085][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c6e6f1783364d5307c1e22caca9f3324.content"
biodb.TRACE[2022-04-09 08:06:08.106][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c6e6f1783364d5307c1e22caca9f3324.request"
biodb.TRACE[2022-04-09 08:06:08.127][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/139019.xml"
biodb.DEBUG[2022-04-09 08:06:08.134][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:06:08.159][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:08.160][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:08.161][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:08.162][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:08.162][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:08.164][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:08.165][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:08.165][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:08.166][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:08.168][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:08.169][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:08.169][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.170][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:08.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:08.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.181][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:08.181][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:08.182][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.183][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.184][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:08.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:08.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.193][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:08.194][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:08.194][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.195][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.196][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:08.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:08.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.205][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:08.206][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:08.206][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.207][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.208][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:08.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:08.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.217][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:08.218][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:08.218][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.219][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.220][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:08.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:08.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.229][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:08.230][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:08.231][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.231][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.232][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:08.233][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.234][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.235][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.235][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:08.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.245][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:08.246][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:08.246][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.247][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.248][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:08.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:08.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.257][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:08.258][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:08.259][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.260][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.261][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:08.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:08.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.275][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:08.276][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:08.277][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.278][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.278][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:08.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:08.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.287][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:08.288][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:08.289][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.290][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.291][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:08.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:08.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.300][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.302][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.305][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:08.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:08.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.308][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.311][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:08.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:08.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.314][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:08.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:08.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.317][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:08.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:08.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:08.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:08.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.329][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:08.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:08.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:08.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:08.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:08.335][self$createEntryFromContent] Accession numbers: 139019.
biodb.TRACE[2022-04-09 08:06:08.336][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:08.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:08.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.339][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:08.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:08.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.342][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:08.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:08.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:08.345][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:08.345][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:08.346][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:08.347][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:08.348][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:08.349][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:08.350][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:08.350][private$loadEntries] Creating entries from ids [1]: "139367".
biodb.DEBUG[2022-04-09 08:06:08.351][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:08.352][cch$loadFileContent] Trying to load 1 files from cache: [1]: "139367".
biodb.TRACE[2022-04-09 08:06:08.353][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:06:08.354][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:06:08.355][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:08.356][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:06:08.357][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:06:08.357][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:06:08.360][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:08.360][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:08.361][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:08.362][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:08.363][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:08.364][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:08.365][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:08.366][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139367".
biodb.DEBUG[2022-04-09 08:06:08.368][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:06:08.369][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:06:08.370][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139367".
biodb.TRACE[2022-04-09 08:06:08.826][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139367).
biodb.DEBUG[2022-04-09 08:06:09.295][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:06:09.310][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ad7d38680a9a89d96fe967aa23d4180d.content"
biodb.TRACE[2022-04-09 08:06:09.340][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ad7d38680a9a89d96fe967aa23d4180d.request"
biodb.TRACE[2022-04-09 08:06:09.360][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/139367.xml"
biodb.DEBUG[2022-04-09 08:06:09.367][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:06:09.383][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:09.384][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:09.386][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:09.386][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:09.387][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:09.389][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:09.389][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:09.390][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:09.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:09.392][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:09.393][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:09.394][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.394][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:09.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:09.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.404][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:09.405][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:09.406][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.406][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.407][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:09.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:09.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.416][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:09.417][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:09.418][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.419][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.420][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:09.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:09.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.429][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:09.430][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:09.430][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.431][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.432][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:09.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:09.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.442][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:09.442][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:09.443][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.444][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.445][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:09.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:09.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.460][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:09.461][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:09.461][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.462][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.463][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:09.464][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.465][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.465][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.466][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:09.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.475][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.476][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.476][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.477][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.478][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.487][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:09.488][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:09.488][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.489][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.490][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:09.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:09.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.499][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:09.500][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:09.500][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.501][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.502][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:09.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:09.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.511][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:09.511][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:09.512][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.513][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.514][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:09.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:09.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.523][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.526][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:09.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:09.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.532][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.535][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:09.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:09.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.538][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:09.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:09.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.541][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:09.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:09.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:09.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:09.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.553][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:09.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:09.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.556][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:09.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:09.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:09.559][self$createEntryFromContent] Accession numbers: 139367.
biodb.TRACE[2022-04-09 08:06:09.560][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.563][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.566][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:09.569][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:09.570][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:09.571][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:09.572][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:09.573][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:09.573][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:09.574][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:09.575][private$loadEntries] Creating entries from ids [1]: "145029".
biodb.DEBUG[2022-04-09 08:06:09.576][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:09.582][cch$loadFileContent] Trying to load 1 files from cache: [1]: "145029".
biodb.TRACE[2022-04-09 08:06:09.584][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:06:09.584][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:06:09.585][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:09.586][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:06:09.587][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:06:09.588][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:06:09.590][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:09.590][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:09.591][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:09.592][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:09.593][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:09.594][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:09.594][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:09.595][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=145029".
biodb.DEBUG[2022-04-09 08:06:09.597][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:06:09.598][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:06:09.599][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=145029".
biodb.TRACE[2022-04-09 08:06:10.053][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=145029).
biodb.DEBUG[2022-04-09 08:06:10.689][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:06:10.703][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6db4642c7bdbd10dc105b3470394caa5.content"
biodb.TRACE[2022-04-09 08:06:10.724][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6db4642c7bdbd10dc105b3470394caa5.request"
biodb.TRACE[2022-04-09 08:06:10.744][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/145029.xml"
biodb.DEBUG[2022-04-09 08:06:10.751][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:06:10.768][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:10.769][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:10.770][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:10.771][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:10.771][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:10.773][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:10.774][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:10.774][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:10.775][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:10.777][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:10.778][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:10.778][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.779][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.780][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:10.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:10.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.790][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:10.791][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:10.792][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.793][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.794][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:10.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:10.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.809][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:10.810][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:10.810][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.811][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.812][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:10.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:10.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.821][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:10.822][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:10.823][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.823][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.824][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:10.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:10.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.833][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:10.834][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:10.835][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.836][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.837][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:10.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:10.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.846][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:10.846][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:10.847][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.848][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.849][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:10.850][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.850][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.851][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.852][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:10.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.861][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.862][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.862][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.863][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.864][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.873][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:10.874][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:10.874][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.875][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.876][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:10.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:10.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.885][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:10.886][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:10.887][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.888][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.889][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:10.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:10.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.898][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:10.899][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:10.899][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.900][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.901][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:10.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:10.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.910][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.914][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.917][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:10.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:10.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.920][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.923][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:10.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:10.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.926][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:10.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:10.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:10.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:10.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:10.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:10.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.947][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:10.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:10.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.950][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:10.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:10.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:10.953][self$createEntryFromContent] Accession numbers: 145029.
biodb.TRACE[2022-04-09 08:06:10.954][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.957][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.960][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:10.963][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:10.964][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:10.964][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:10.966][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:10.966][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:10.967][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:10.968][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:10.969][private$loadEntries] Creating entries from ids [1]: "173077".
biodb.DEBUG[2022-04-09 08:06:10.969][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:10.971][cch$loadFileContent] Trying to load 1 files from cache: [1]: "173077".
biodb.TRACE[2022-04-09 08:06:10.972][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:06:10.972][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:06:10.973][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:10.974][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:06:10.975][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:06:10.975][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:06:10.977][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:10.978][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:10.979][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:10.980][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:10.981][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:10.981][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:10.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:10.983][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=173077".
biodb.DEBUG[2022-04-09 08:06:10.985][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:06:10.986][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:06:10.987][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=173077".
biodb.TRACE[2022-04-09 08:06:11.486][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=173077).
biodb.DEBUG[2022-04-09 08:06:12.077][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:06:12.091][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/337fedbe654250105ac3b03683794b9b.content"
biodb.TRACE[2022-04-09 08:06:12.112][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/337fedbe654250105ac3b03683794b9b.request"
biodb.TRACE[2022-04-09 08:06:12.133][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/173077.xml"
biodb.DEBUG[2022-04-09 08:06:12.141][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:06:12.167][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:12.168][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:12.170][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:12.170][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:12.171][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:12.173][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:12.173][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:12.174][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:12.175][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:12.177][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:12.177][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:12.178][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.179][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.180][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:12.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:12.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.190][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:12.191][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:12.191][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.192][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.193][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:12.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:12.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.203][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:12.204][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:12.204][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.205][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.206][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:12.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:12.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.215][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:12.216][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:12.217][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.217][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.218][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:12.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:12.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.227][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:12.228][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:12.229][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.229][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.230][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:12.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:12.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.239][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:12.240][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:12.241][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.242][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.243][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:12.243][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.244][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.245][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.246][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:12.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.255][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:12.256][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:12.256][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.257][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.258][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:12.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:12.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.268][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:12.269][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:12.269][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.270][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.271][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:12.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:12.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.281][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:12.281][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:12.282][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.283][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.284][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:12.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:12.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.303][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:12.304][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:12.304][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.305][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.306][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:12.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:12.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.315][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.318][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.321][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:12.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:12.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.324][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.327][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:12.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:12.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:12.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:12.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:12.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:12.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.342][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:12.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:12.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.345][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:12.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:12.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.348][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:12.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:12.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:12.351][self$createEntryFromContent] Accession numbers: 173077.
biodb.TRACE[2022-04-09 08:06:12.352][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:12.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:12.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.355][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:12.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:12.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.358][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:12.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:12.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:12.360][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:12.361][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:12.362][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:12.363][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:12.364][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:12.365][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:12.365][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:12.366][private$loadEntries] Creating entries from ids [1]: "365445".
biodb.DEBUG[2022-04-09 08:06:12.367][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:12.368][cch$loadFileContent] Trying to load 1 files from cache: [1]: "365445".
biodb.TRACE[2022-04-09 08:06:12.369][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:06:12.370][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:06:12.371][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:12.371][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:06:12.372][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:06:12.373][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:06:12.375][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:12.376][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:12.376][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:12.378][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:12.378][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:12.379][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:12.380][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:12.381][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=365445".
biodb.DEBUG[2022-04-09 08:06:12.383][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:06:12.383][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:06:12.384][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=365445".
biodb.TRACE[2022-04-09 08:06:12.831][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=365445).
biodb.DEBUG[2022-04-09 08:06:13.298][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:06:13.312][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/026ecb4be6491f40bcefe5cdf8425328.content"
biodb.TRACE[2022-04-09 08:06:13.333][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/026ecb4be6491f40bcefe5cdf8425328.request"
biodb.TRACE[2022-04-09 08:06:13.366][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/365445.xml"
biodb.DEBUG[2022-04-09 08:06:13.374][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:06:13.391][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:13.392][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:13.393][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:13.394][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:13.394][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:13.396][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:13.397][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:13.397][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:13.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:13.400][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:13.401][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:13.401][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.402][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.403][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:13.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:13.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.412][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:13.413][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:13.414][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.415][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.416][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:13.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:13.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.425][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:13.425][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:13.426][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.427][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.428][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:13.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:13.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.437][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:13.438][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:13.439][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.439][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.440][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:13.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:13.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.449][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:13.450][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:13.451][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.452][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.453][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:13.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:13.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.462][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:13.463][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:13.464][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.465][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.466][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:13.466][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:13.467][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.468][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.469][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:13.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:13.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.485][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.486][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.487][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.487][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.488][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.498][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:13.498][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:13.499][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.500][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.501][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:13.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:13.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.510][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:13.511][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:13.511][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.512][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.513][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:13.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:13.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.522][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:13.523][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:13.524][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.524][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.525][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:13.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:13.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.534][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.537][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:13.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:13.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.543][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.546][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:13.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:13.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.548][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:13.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:13.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.551][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:13.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:13.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.560][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:13.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:13.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.563][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:13.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:13.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.566][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:13.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:13.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:13.569][self$createEntryFromContent] Accession numbers: 365445.
biodb.TRACE[2022-04-09 08:06:13.570][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.573][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.576][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:13.579][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:13.580][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:13.581][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:13.582][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:13.583][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:13.584][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:13.584][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:13.585][private$loadEntries] Creating entries from ids [1]: "32151".
biodb.DEBUG[2022-04-09 08:06:13.586][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:13.587][cch$loadFileContent] Trying to load 1 files from cache: [1]: "32151".
biodb.TRACE[2022-04-09 08:06:13.588][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:06:13.589][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:06:13.590][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:13.591][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:06:13.591][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:06:13.592][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:06:13.594][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:13.595][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:13.596][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:13.597][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:13.598][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:13.599][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:13.599][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:13.600][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=32151".
biodb.DEBUG[2022-04-09 08:06:13.602][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:06:13.603][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:06:13.610][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=32151".
biodb.TRACE[2022-04-09 08:06:14.054][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=32151).
biodb.DEBUG[2022-04-09 08:06:14.518][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:06:14.542][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/094c4c16dd654c0e11594a0cd5a42217.content"
biodb.TRACE[2022-04-09 08:06:14.564][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/094c4c16dd654c0e11594a0cd5a42217.request"
biodb.TRACE[2022-04-09 08:06:14.584][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/32151.xml"
biodb.DEBUG[2022-04-09 08:06:14.591][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:06:14.607][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:14.609][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:14.610][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:14.611][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:14.611][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:14.613][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:14.613][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:14.614][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:14.615][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:14.617][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:14.617][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:14.618][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.619][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.620][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:14.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:14.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.630][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:14.631][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:14.631][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.632][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.633][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:14.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:14.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.643][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:14.644][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:14.645][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.645][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.646][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:14.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:14.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.656][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:14.657][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:14.658][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.658][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.659][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:14.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:14.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.675][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:14.676][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:14.676][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.677][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.678][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:14.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:14.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.687][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:14.688][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:14.688][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.689][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.690][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:14.691][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:14.692][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.692][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.693][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:14.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:14.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.702][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:14.703][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:14.704][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.704][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.705][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:14.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:14.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.714][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:14.715][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:14.716][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.716][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.717][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:14.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:14.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.726][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:14.727][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:14.728][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.728][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.729][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:14.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:14.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.738][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:14.739][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:14.740][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.740][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.741][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:14.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:14.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.750][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.753][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.756][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:14.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:14.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.759][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.762][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:14.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:14.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.766][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:14.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:14.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.769][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:14.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:14.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:14.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:14.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.782][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:14.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:14.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.785][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:14.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:14.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:14.794][self$createEntryFromContent] Accession numbers: 32151.
biodb.TRACE[2022-04-09 08:06:14.795][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:14.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:14.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.798][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:14.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:14.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.801][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:14.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:14.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:14.804][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:14.804][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:14.805][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:14.807][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:14.807][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:14.808][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:14.809][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:14.809][private$loadEntries] Creating entries from ids [1]: "67676".
biodb.DEBUG[2022-04-09 08:06:14.810][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:14.811][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67676".
biodb.TRACE[2022-04-09 08:06:14.812][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:06:14.813][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:06:14.814][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:14.815][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:06:14.816][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:06:14.816][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:06:14.818][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:14.819][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:14.820][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:14.821][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:14.822][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:14.822][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:14.823][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:14.824][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67676".
biodb.DEBUG[2022-04-09 08:06:14.826][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:06:14.827][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:06:14.828][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67676".
biodb.TRACE[2022-04-09 08:06:15.326][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67676).
biodb.DEBUG[2022-04-09 08:06:15.798][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:06:15.812][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f87eff9f669415e5528b4d9281ce70e2.content"
biodb.TRACE[2022-04-09 08:06:15.833][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f87eff9f669415e5528b4d9281ce70e2.request"
biodb.TRACE[2022-04-09 08:06:15.853][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67676.xml"
biodb.DEBUG[2022-04-09 08:06:15.860][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:06:15.878][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:15.879][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:15.880][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:15.881][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:15.881][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:15.883][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:15.884][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:15.884][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:15.885][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:15.887][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:15.888][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:15.888][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.889][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.890][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:15.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:15.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.906][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:15.907][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:15.908][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.909][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.910][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:15.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:15.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.919][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:15.919][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:15.920][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.921][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.922][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:15.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:15.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.931][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:15.932][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:15.932][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.933][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.934][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:15.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:15.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.943][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:15.944][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:15.944][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.945][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.946][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:15.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:15.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.955][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:15.956][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:15.956][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.957][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.958][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:15.959][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.959][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.960][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.961][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:15.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.970][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:15.971][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:15.971][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.972][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.973][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:15.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:15.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.982][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:15.983][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:15.984][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.984][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.985][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:15.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:15.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.995][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:15.995][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:15.996][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.997][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.998][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:15.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:15.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.007][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:16.008][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:16.009][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.010][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.011][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:16.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:16.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.026][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.030][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.033][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:16.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:16.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.036][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:16.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:16.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.042][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:16.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:16.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.045][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:16.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:16.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:16.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:16.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.058][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:16.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:16.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:16.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:16.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:16.064][self$createEntryFromContent] Accession numbers: 67676.
biodb.TRACE[2022-04-09 08:06:16.065][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.068][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.071][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:16.074][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:16.075][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:16.075][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:16.077][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:16.077][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:16.078][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:16.079][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:16.080][private$loadEntries] Creating entries from ids [1]: "69690".
biodb.DEBUG[2022-04-09 08:06:16.080][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:16.082][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69690".
biodb.TRACE[2022-04-09 08:06:16.082][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:06:16.083][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:06:16.084][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:16.085][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:06:16.086][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:06:16.086][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:06:16.088][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:16.089][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:16.090][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:16.091][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:16.092][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:16.092][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:16.093][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:16.094][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69690".
biodb.DEBUG[2022-04-09 08:06:16.096][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:06:16.137][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:06:16.138][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69690".
biodb.TRACE[2022-04-09 08:06:16.578][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69690).
biodb.DEBUG[2022-04-09 08:06:17.056][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:06:17.070][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ce43467f7e4550d502ff0cc79c06666.content"
biodb.TRACE[2022-04-09 08:06:17.091][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ce43467f7e4550d502ff0cc79c06666.request"
biodb.TRACE[2022-04-09 08:06:17.112][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/69690.xml"
biodb.DEBUG[2022-04-09 08:06:17.128][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:06:17.145][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:17.146][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:17.147][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:17.148][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:17.149][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:17.150][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:17.151][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:17.152][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:17.152][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:17.154][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:17.155][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:17.156][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.156][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.157][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:17.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:17.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.167][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:17.167][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:17.168][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.169][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.170][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:17.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:17.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.179][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:17.180][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:17.180][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.181][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.182][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:17.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:17.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.191][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:17.192][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:17.192][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.193][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.194][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:17.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:17.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.203][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:17.204][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:17.205][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.205][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.206][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:17.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:17.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.216][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:17.216][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:17.217][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.218][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.219][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:17.220][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:17.220][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.221][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.222][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:17.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:17.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.231][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:17.232][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:17.233][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.234][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.235][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:17.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:17.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.249][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:17.250][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:17.251][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.252][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.254][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:17.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:17.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.263][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:17.263][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:17.264][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.265][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.266][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:17.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:17.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.275][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:17.275][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:17.276][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.277][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.278][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:17.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:17.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.287][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:17.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:17.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.289][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:17.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:17.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.292][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:17.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:17.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.295][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:17.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:17.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.298][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:17.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:17.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:17.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:17.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.304][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:17.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:17.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.313][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:17.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:17.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.316][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:17.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:17.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.319][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:17.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:17.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:17.322][self$createEntryFromContent] Accession numbers: 69690.
biodb.TRACE[2022-04-09 08:06:17.323][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:17.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:17.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.326][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:17.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:17.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.329][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:17.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:17.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:17.332][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:17.332][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:17.333][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:17.334][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:17.335][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:17.336][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:17.337][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:17.337][private$loadEntries] Creating entries from ids [1]: "69734".
biodb.DEBUG[2022-04-09 08:06:17.338][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:17.339][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69734".
biodb.TRACE[2022-04-09 08:06:17.340][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:06:17.341][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:06:17.342][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:17.343][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:06:17.344][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:06:17.344][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:06:17.346][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:17.347][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:17.348][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:17.349][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:17.350][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:17.351][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:17.351][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:17.352][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69734".
biodb.DEBUG[2022-04-09 08:06:17.354][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:06:17.355][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:06:17.356][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69734".
biodb.TRACE[2022-04-09 08:06:17.802][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69734).
biodb.DEBUG[2022-04-09 08:06:18.375][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:06:18.390][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3ed7db8dba94801a8856f9bde313afe1.content"
biodb.TRACE[2022-04-09 08:06:18.421][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3ed7db8dba94801a8856f9bde313afe1.request"
biodb.TRACE[2022-04-09 08:06:18.442][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/69734.xml"
biodb.DEBUG[2022-04-09 08:06:18.450][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:06:18.467][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:18.468][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:18.469][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:18.470][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:18.471][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:18.472][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:18.473][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:18.474][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:18.474][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:18.476][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:18.477][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:18.478][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.478][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.479][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:18.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:18.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.488][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:18.489][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:18.490][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.491][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.492][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:18.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:18.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.501][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:18.502][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:18.502][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.503][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.504][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:18.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:18.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.513][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:18.514][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:18.515][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.516][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.517][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:18.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:18.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.526][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:18.527][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:18.528][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.534][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.535][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:18.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:18.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.545][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:18.546][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:18.547][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.547][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.548][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:18.549][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.550][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.550][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.551][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:18.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.560][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:18.561][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:18.562][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.563][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.564][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:18.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:18.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.573][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:18.573][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:18.574][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.575][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.576][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:18.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:18.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.585][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:18.585][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:18.586][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.587][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.588][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:18.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:18.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.597][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:18.598][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:18.598][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.599][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.600][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:18.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:18.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.609][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.612][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.615][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:18.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:18.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.618][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.621][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:18.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:18.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.624][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:18.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:18.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.627][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:18.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:18.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:18.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:18.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.640][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:18.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:18.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.643][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:18.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:18.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:18.646][self$createEntryFromContent] Accession numbers: 69734.
biodb.TRACE[2022-04-09 08:06:18.647][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:18.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:18.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.650][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:18.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:18.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.653][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:18.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:18.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:18.663][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:18.664][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:18.664][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:18.666][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:18.667][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:18.667][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:18.668][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:18.669][private$loadEntries] Creating entries from ids [1]: "79978".
biodb.DEBUG[2022-04-09 08:06:18.670][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:18.671][cch$loadFileContent] Trying to load 1 files from cache: [1]: "79978".
biodb.TRACE[2022-04-09 08:06:18.672][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:06:18.673][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:06:18.673][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:18.674][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:06:18.675][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:06:18.676][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:06:18.678][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:18.678][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:18.679][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:18.680][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:18.681][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:18.682][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:18.682][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:18.683][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79978".
biodb.DEBUG[2022-04-09 08:06:18.685][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:06:18.686][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:06:18.687][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79978".
biodb.TRACE[2022-04-09 08:06:19.126][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79978).
biodb.DEBUG[2022-04-09 08:06:19.599][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:06:19.614][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fb887d003d6fc3b4aa767483d261b31c.content"
biodb.TRACE[2022-04-09 08:06:19.635][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fb887d003d6fc3b4aa767483d261b31c.request"
biodb.TRACE[2022-04-09 08:06:19.655][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/79978.xml"
biodb.DEBUG[2022-04-09 08:06:19.662][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:06:19.680][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:19.681][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:19.683][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:19.683][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:19.684][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:19.686][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:19.686][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:19.687][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:19.688][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:19.690][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:19.691][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:19.691][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.692][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.693][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:19.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:19.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.708][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:19.710][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:19.711][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.712][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.713][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:19.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:19.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.723][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:19.723][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:19.724][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.725][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.726][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:19.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:19.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.735][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:19.736][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:19.737][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.737][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.738][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:19.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:19.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.747][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:19.748][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:19.749][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.750][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.751][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:19.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:19.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.760][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:19.761][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:19.762][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.762][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.763][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:19.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:19.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.773][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:19.773][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:19.774][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.775][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.776][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:19.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:19.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.785][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:19.786][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:19.786][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.787][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.788][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:19.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:19.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.797][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:19.798][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:19.799][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.800][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.801][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:19.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:19.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.810][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:19.811][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:19.812][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.813][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.814][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:19.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:19.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.824][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:19.824][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:19.825][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.826][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.827][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:19.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:19.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.844][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.847][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.850][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:19.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:19.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.853][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.856][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:19.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:19.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.859][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:19.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:19.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.862][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:19.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:19.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.871][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:19.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:19.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:19.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:19.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.877][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:19.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:19.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:19.880][self$createEntryFromContent] Accession numbers: 79978.
biodb.TRACE[2022-04-09 08:06:19.881][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:19.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:19.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.884][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:19.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:19.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.886][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:19.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:19.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:19.889][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:19.890][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:19.891][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:19.892][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:19.893][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:19.894][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:19.894][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:19.895][private$loadEntries] Creating entries from ids [1]: "88771".
biodb.DEBUG[2022-04-09 08:06:19.896][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:19.897][cch$loadFileContent] Trying to load 1 files from cache: [1]: "88771".
biodb.TRACE[2022-04-09 08:06:19.898][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:06:19.899][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:06:19.900][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:19.900][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:06:19.901][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:06:19.902][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:06:19.904][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:19.905][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:19.905][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:19.907][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:19.907][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:19.908][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:19.909][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:19.910][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88771".
biodb.DEBUG[2022-04-09 08:06:19.912][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:06:19.912][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:06:19.913][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88771".
biodb.TRACE[2022-04-09 08:06:20.348][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88771).
biodb.DEBUG[2022-04-09 08:06:20.828][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:06:20.842][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f96325cdb7f39b42d0ab67a7fc41aced.content"
biodb.TRACE[2022-04-09 08:06:20.864][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f96325cdb7f39b42d0ab67a7fc41aced.request"
biodb.TRACE[2022-04-09 08:06:20.894][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88771.xml"
biodb.DEBUG[2022-04-09 08:06:20.902][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:06:20.920][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:20.921][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:20.922][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:20.923][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:20.924][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:20.925][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:20.926][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:20.926][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:20.927][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:20.929][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:20.930][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:20.930][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.931][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.932][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:20.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:20.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.942][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:20.943][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:20.944][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.944][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.945][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:20.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:20.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.955][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:20.955][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:20.956][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.957][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.958][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:20.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:20.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.968][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:20.968][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:20.969][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.970][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.971][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:20.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:20.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.980][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:20.981][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:20.982][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.982][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.983][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:20.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:20.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.993][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:20.993][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:20.994][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.995][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.996][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:20.997][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:20.998][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.998][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.999][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:21.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:21.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.009][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.010][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.011][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.012][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.013][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.029][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:21.030][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:21.030][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.031][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.032][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:21.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:21.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.041][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:21.042][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:21.043][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.044][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.045][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:21.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:21.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.054][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:21.055][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:21.055][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.056][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.057][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:21.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:21.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.066][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.069][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.072][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:21.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:21.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.075][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.078][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:21.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:21.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.081][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:21.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:21.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:21.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:21.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:21.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:21.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.097][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:21.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:21.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.099][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:21.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:21.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:21.102][self$createEntryFromContent] Accession numbers: 88771.
biodb.TRACE[2022-04-09 08:06:21.103][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.106][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.109][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:21.112][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:21.113][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:21.114][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:21.115][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:21.116][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:21.117][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:21.117][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:21.118][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.121][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.124][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:21.128][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:21.128][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:21.129][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:21.130][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:21.131][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:21.132][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:21.133][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:21.133][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.136][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.140][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:21.143][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:21.144][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:21.145][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:21.145][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:21.147][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:21.148][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:21.154][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:21.155][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:21.156][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.160][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.163][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:21.163][private$selectFields]
biodb.TRACE[2022-04-09 08:06:21.164][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:21.165][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:21.166][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:21.166][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.167][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.168][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.169][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.169][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.170][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.171][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.171][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.172][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:21.173][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:21.174][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.174][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.175][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.176][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.177][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:21.177][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.180][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.183][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.186][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2022-04-09 08:06:21.187][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:21.188][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:21.189][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:21.190][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:21.191][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:21.191][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:21.192][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:21.193][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.196][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.199][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:21.199][private$selectFields]
biodb.TRACE[2022-04-09 08:06:21.200][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:21.201][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:21.201][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:21.202][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.203][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.204][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.204][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.205][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.206][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.206][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.207][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.208][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:21.209][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:21.209][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.210][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.211][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.211][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.212][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:21.213][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.216][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.219][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.222][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2022-04-09 08:06:21.223][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:21.223][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:21.224][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:21.226][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:21.226][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:21.227][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:21.227][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:21.228][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.231][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.234][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:21.235][private$selectFields]
biodb.TRACE[2022-04-09 08:06:21.236][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:21.236][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:21.237][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:21.238][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.239][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.239][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.240][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.241][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.242][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.242][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.243][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.244][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:21.244][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:21.245][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.246][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.247][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.247][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.248][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:21.249][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.252][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.255][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.258][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2022-04-09 08:06:21.259][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:21.260][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:21.262][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:21.262][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:21.263][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:21.264][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:21.265][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:21.266][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:21.266][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:21.353][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:21.355][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:21.357][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4d5b921f88c8441be6a678700f44ffee".
biodb.TRACE[2022-04-09 08:06:21.357][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:21.359][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4d5b921f88c8441be6a678700f44ffee.content".
biodb.DEBUG[2022-04-09 08:06:21.363][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:21.363][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:21.364][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:21.365][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:21.366][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:21.367][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:21.367][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:21.368][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.371][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.374][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:21.377][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:21.378][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:21.379][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:21.380][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:21.381][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:21.381][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:21.382][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:21.383][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.386][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.389][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:21.392][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:21.392][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:21.393][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:21.394][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:21.395][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:21.396][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:21.396][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:21.397][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.406][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.409][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:21.412][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:21.413][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:21.414][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:21.415][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:21.416][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:21.416][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:21.417][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:21.418][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.421][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.423][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:21.426][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:21.428][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:21.428][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:21.429][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:21.430][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:21.431][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:21.431][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:21.432][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:21.433][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.436][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.439][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:21.439][private$selectFields]
biodb.TRACE[2022-04-09 08:06:21.440][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:21.441][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:21.441][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:21.442][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.443][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.444][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.444][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.445][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.446][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.446][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.447][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.448][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:21.448][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:21.449][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.450][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.450][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.451][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.452][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:21.453][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.455][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.458][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.461][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2022-04-09 08:06:21.462][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:21.463][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:21.463][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:21.464][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:21.465][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:21.466][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:21.466][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:21.467][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.470][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.473][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:21.473][private$selectFields]
biodb.TRACE[2022-04-09 08:06:21.474][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:21.475][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:21.475][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:21.476][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.477][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.478][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.478][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.479][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.480][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.480][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.481][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.482][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:21.483][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:21.483][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.484][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.485][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.485][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.486][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:21.487][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.490][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.493][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.496][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2022-04-09 08:06:21.497][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:21.497][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:21.498][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:21.499][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:21.500][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:21.501][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:21.501][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:21.502][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.505][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.508][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:21.509][private$selectFields]
biodb.TRACE[2022-04-09 08:06:21.509][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:21.510][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:21.511][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:21.512][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.512][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.513][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.514][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.515][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.515][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.516][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.517][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.517][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:21.518][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:21.519][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.520][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.520][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.521][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.522][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:21.523][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.531][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.534][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.537][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2022-04-09 08:06:21.538][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:21.539][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:21.554][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:21.555][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:21.555][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:21.557][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:21.557][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:21.558][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:21.558][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:21.640][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:21.647][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:21.649][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4d5b921f88c8441be6a678700f44ffee".
biodb.TRACE[2022-04-09 08:06:21.650][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:21.651][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4d5b921f88c8441be6a678700f44ffee.content".
biodb.DEBUG[2022-04-09 08:06:21.656][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:21.656][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:21.657][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:21.658][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:21.659][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:21.660][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:21.660][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:21.661][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.664][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.667][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:21.670][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:21.670][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:21.671][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:21.672][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:21.673][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:21.674][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:21.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:21.675][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.678][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.681][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:21.684][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:21.684][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:21.685][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:21.686][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:21.687][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:21.687][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:21.688][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:21.689][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.692][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.694][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:21.697][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:21.698][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:21.698][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:21.700][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:21.700][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:21.701][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:21.702][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:21.702][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.705][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.708][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:21.711][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:21.711][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:21.712][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:21.713][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:21.714][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:21.715][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:21.715][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:21.716][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.719][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.722][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:21.725][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:21.725][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:21.726][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:21.727][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:21.728][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:21.728][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:21.729][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:21.730][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.733][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.736][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:21.739][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:21.739][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:21.740][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:21.741][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:21.742][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:21.742][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:21.743][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:21.744][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.747][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.750][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:21.753][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:21.754][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:21.755][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:21.756][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:21.757][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:21.758][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:21.758][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:21.759][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:21.760][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.763][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.766][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:21.766][private$selectFields]
biodb.TRACE[2022-04-09 08:06:21.773][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:21.774][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:21.775][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:21.776][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.777][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.777][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.778][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.779][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.780][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.780][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.781][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.782][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:21.783][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:21.783][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.784][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.785][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.785][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.786][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:21.787][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.790][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.792][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.796][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2022-04-09 08:06:21.796][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:21.797][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:21.798][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:21.799][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:21.800][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:21.800][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:21.801][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:21.802][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.805][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.807][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:21.808][private$selectFields]
biodb.TRACE[2022-04-09 08:06:21.809][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:21.809][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:21.810][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:21.811][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.811][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.812][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.813][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.814][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.814][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.815][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.816][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.816][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:21.817][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:21.818][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.818][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.819][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.820][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.820][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:21.821][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.824][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.827][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.830][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2022-04-09 08:06:21.831][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:21.831][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:21.832][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:21.833][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:21.834][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:21.834][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:21.835][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:21.836][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.839][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.842][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:21.842][private$selectFields]
biodb.TRACE[2022-04-09 08:06:21.843][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:21.844][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:21.844][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:21.845][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.846][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.847][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.847][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.848][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.849][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.849][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.850][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.851][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:21.851][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:21.852][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.853][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.854][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.854][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.855][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:21.856][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.859][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.862][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.865][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [34764].
biodb.DEBUG[2022-04-09 08:06:21.866][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:21.866][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:21.868][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:21.869][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:21.869][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:21.871][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:21.871][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:21.872][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:21.873][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:21.960][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:21.962][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:21.963][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d5104bb979c9ec31aa9634ac7a986155".
biodb.TRACE[2022-04-09 08:06:21.964][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:21.965][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5104bb979c9ec31aa9634ac7a986155.content".
biodb.DEBUG[2022-04-09 08:06:21.970][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:21.971][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:21.971][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:21.973][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:21.974][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:21.974][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:21.975][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:21.976][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.979][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.982][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:21.985][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:21.986][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:21.987][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:21.988][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:21.989][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:21.989][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:21.990][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:21.991][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.994][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.997][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:22.000][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:22.001][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:22.002][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:22.003][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:22.004][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:22.005][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:22.005][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:22.006][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.009][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.013][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:22.023][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:22.024][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:22.025][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:22.026][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:22.027][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:22.028][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:22.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:22.030][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.033][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.036][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:22.039][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:22.041][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:22.041][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:22.042][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:22.043][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:22.044][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:22.045][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:22.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:22.046][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.049][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.053][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:22.053][private$selectFields]
biodb.TRACE[2022-04-09 08:06:22.054][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:22.055][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:22.055][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:22.056][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.057][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.058][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.058][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.059][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.060][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.061][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.062][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.062][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:22.063][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:22.064][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.065][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.065][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.066][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.067][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:22.068][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.071][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.073][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.077][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [2535].
biodb.DEBUG[2022-04-09 08:06:22.078][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:22.078][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:22.079][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:22.080][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:22.081][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:22.082][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:22.082][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:22.083][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.086][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.089][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:22.090][private$selectFields]
biodb.TRACE[2022-04-09 08:06:22.091][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:22.091][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:22.092][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:22.093][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.094][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.094][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.095][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.096][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.097][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.097][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.098][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.099][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:22.100][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:22.100][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.101][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.102][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.103][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.103][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:22.104][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.107][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.110][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.113][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2022-04-09 08:06:22.114][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:22.115][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:22.116][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:22.117][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:22.118][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:22.118][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:22.119][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:22.120][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.123][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.126][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:22.127][private$selectFields]
biodb.TRACE[2022-04-09 08:06:22.128][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:22.129][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:22.129][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:22.130][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.131][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.132][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.133][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.133][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.134][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.135][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.136][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.137][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:22.137][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:22.138][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.139][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.140][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.140][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.141][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:22.142][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.145][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.154][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.158][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2022-04-09 08:06:22.159][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:22.160][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:22.161][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:22.162][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:22.163][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:22.164][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:22.165][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:22.166][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:22.166][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:22.251][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:22.254][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:22.255][cch$loadFileContent] Trying to load 1 files from cache: [1]: "beb9d154bf0d4e4f372dd6176fab59e2".
biodb.TRACE[2022-04-09 08:06:22.256][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:22.257][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/beb9d154bf0d4e4f372dd6176fab59e2.content".
biodb.DEBUG[2022-04-09 08:06:22.260][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:22.260][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:22.261][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:22.263][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:22.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:22.264][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:22.265][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:22.266][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.269][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.272][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:22.275][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:22.282][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:22.283][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:22.285][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:22.286][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:22.286][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:22.287][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:22.288][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.291][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.294][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:22.297][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:22.298][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:22.299][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:22.300][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:22.301][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:22.302][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:22.302][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:22.303][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.306][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.309][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:22.312][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:22.313][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:22.314][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:22.315][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:22.316][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:22.316][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:22.317][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:22.318][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.321][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.324][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:22.327][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:22.328][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:22.328][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:22.330][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:22.330][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:22.331][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:22.332][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:22.333][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.335][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.338][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:22.342][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:22.343][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:22.344][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:22.344][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:22.346][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:22.346][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:22.347][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:22.348][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:22.349][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.352][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.355][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:22.355][private$selectFields]
biodb.TRACE[2022-04-09 08:06:22.356][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:22.357][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:22.357][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:22.358][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.359][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.360][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.360][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.361][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.362][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.363][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.364][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.364][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:22.365][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:22.366][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.367][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.368][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.368][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.369][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:22.370][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.373][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.376][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.380][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [31303].
biodb.DEBUG[2022-04-09 08:06:22.381][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:22.381][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:22.382][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:22.384][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:22.384][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:22.385][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:22.386][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:22.387][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.390][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.393][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:22.394][private$selectFields]
biodb.TRACE[2022-04-09 08:06:22.395][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:22.395][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:22.396][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:22.397][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.398][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.399][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.399][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.400][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.401][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.402][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.403][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.403][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:22.404][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:22.405][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.406][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.406][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.407][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.408][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:22.414][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.419][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.422][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.425][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [81767].
biodb.DEBUG[2022-04-09 08:06:22.426][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:22.427][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:22.427][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:22.429][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:22.430][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:22.430][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:22.431][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:22.432][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.435][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.438][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:22.439][private$selectFields]
biodb.TRACE[2022-04-09 08:06:22.439][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:22.440][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:22.441][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:22.442][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.442][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.443][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.444][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.445][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.445][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.446][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.447][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.448][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:22.448][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:22.449][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.450][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.451][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.451][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.452][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:22.453][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.456][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.458][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.462][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [131378].
biodb.DEBUG[2022-04-09 08:06:22.462][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:22.463][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:22.479][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:22.479][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:22.480][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:22.481][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:22.482][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:22.482][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:22.483][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:22.574][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:22.576][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:22.577][cch$loadFileContent] Trying to load 1 files from cache: [1]: "c60f2116f91d4ce61370ae6298305b49".
biodb.TRACE[2022-04-09 08:06:22.578][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:22.579][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c60f2116f91d4ce61370ae6298305b49.content".
biodb.DEBUG[2022-04-09 08:06:22.582][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:22.584][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:22.585][cch$loadFileContent] Trying to load 1 files from cache: [1]: "921bb2fccd1f3497458cb7cf8fd2ffda".
biodb.TRACE[2022-04-09 08:06:22.586][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:22.587][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/921bb2fccd1f3497458cb7cf8fd2ffda.content".
biodb.DEBUG[2022-04-09 08:06:22.589][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:22.589][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:22.590][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:22.592][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:22.592][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:22.593][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:22.594][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:22.595][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.598][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.601][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:22.604][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:22.605][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:22.605][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:22.607][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:22.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:22.608][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:22.609][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:22.610][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.613][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.616][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:22.619][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:22.620][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:22.620][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:22.622][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:22.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:22.623][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:22.624][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:22.625][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.628][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.631][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:22.634][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:22.636][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:22.636][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:22.637][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:22.638][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:22.639][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:22.640][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:22.641][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:22.642][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.645][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.648][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:22.649][private$selectFields]
biodb.TRACE[2022-04-09 08:06:22.650][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:22.650][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:22.651][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:22.652][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.653][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.654][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.654][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.655][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.656][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.657][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.657][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.658][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:22.659][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:22.660][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.660][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.661][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.662][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.663][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:22.664][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.673][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.676][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.680][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2022-04-09 08:06:22.681][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:22.681][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:22.682][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:22.684][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:22.684][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:22.685][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:22.686][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:22.686][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.689][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.692][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:22.693][private$selectFields]
biodb.TRACE[2022-04-09 08:06:22.694][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:22.694][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:22.695][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:22.696][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.697][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.697][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.698][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.699][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.700][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.700][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.701][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.702][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:22.703][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:22.703][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.704][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.705][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.705][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.706][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:22.707][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.710][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.713][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.716][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-04-09 08:06:22.717][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:22.718][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:22.718][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:22.720][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:22.720][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:22.721][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:22.722][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:22.723][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.726][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.729][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:22.729][private$selectFields]
biodb.TRACE[2022-04-09 08:06:22.730][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:22.731][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:22.731][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:22.732][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.733][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.734][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.734][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.735][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.736][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.737][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.737][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.738][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:22.739][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:22.739][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.740][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.741][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.742][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.742][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:22.743][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.746][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.749][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.752][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2022-04-09 08:06:22.753][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:22.754][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:22.755][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:22.756][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:22.757][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:22.758][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:22.759][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:22.760][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:22.760][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:22.850][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:22.853][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:22.854][cch$loadFileContent] Trying to load 1 files from cache: [1]: "839357b56387b64c91d43055dd5c5193".
biodb.TRACE[2022-04-09 08:06:22.855][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:22.856][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/839357b56387b64c91d43055dd5c5193.content".
biodb.DEBUG[2022-04-09 08:06:22.857][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:22.858][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:22.859][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:22.860][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:22.861][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:22.862][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:22.862][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:22.863][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.866][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.869][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:22.872][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:22.873][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:22.873][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:22.875][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:22.875][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:22.876][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:22.877][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:22.878][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.881][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.884][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:22.887][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:22.887][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:22.888][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:22.889][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:22.890][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:22.891][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:22.891][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:22.892][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.895][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.898][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:22.902][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:22.903][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:22.904][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:22.904][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:22.906][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:22.906][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:22.907][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:22.908][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:22.909][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.912][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.915][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:22.916][private$selectFields]
biodb.TRACE[2022-04-09 08:06:22.921][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:22.923][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:22.924][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:22.925][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.926][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.926][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.927][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.928][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.929][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.929][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.930][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.931][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:22.932][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:22.932][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.933][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.934][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.935][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.935][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:22.936][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.939][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.942][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.945][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2022-04-09 08:06:22.946][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:22.947][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:22.947][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:22.949][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:22.949][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:22.950][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:22.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:22.952][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.954][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.957][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:22.958][private$selectFields]
biodb.TRACE[2022-04-09 08:06:22.959][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:22.959][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:22.960][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:22.961][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.962][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.962][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.963][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.964][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.965][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.965][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.966][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.967][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:22.967][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:22.968][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.969][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.970][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.970][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.971][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:22.972][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.975][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.977][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.981][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2022-04-09 08:06:22.982][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:22.982][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:22.983][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:22.984][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:22.985][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:22.986][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:22.986][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:22.987][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.990][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.993][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:22.994][private$selectFields]
biodb.TRACE[2022-04-09 08:06:22.994][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:22.995][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:22.996][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:22.996][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.997][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.998][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.999][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.999][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.000][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.001][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.002][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.002][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:23.003][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:23.004][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.005][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.005][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.006][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.007][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:23.008][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.011][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.013][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.017][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2022-04-09 08:06:23.018][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:23.018][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:23.020][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:23.021][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:23.021][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:23.023][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:23.024][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:23.024][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:23.025][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:23.113][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:23.115][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:23.117][cch$loadFileContent] Trying to load 1 files from cache: [1]: "432bde1fb4bc526aec38c781f579d7cb".
biodb.TRACE[2022-04-09 08:06:23.117][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:23.118][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/432bde1fb4bc526aec38c781f579d7cb.content".
biodb.DEBUG[2022-04-09 08:06:23.121][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:23.121][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:23.122][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:23.123][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:23.124][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:23.125][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:23.125][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:23.126][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.129][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.132][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:23.135][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:23.136][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:23.136][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:23.138][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:23.138][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:23.139][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:23.140][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:23.141][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.144][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.147][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:23.150][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:23.151][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:23.151][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:23.153][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:23.153][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:23.154][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:23.155][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:23.156][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.159][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.162][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:23.171][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:23.173][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:23.174][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:23.174][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:23.176][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:23.176][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:23.177][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:23.178][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:23.178][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.181][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.184][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:23.185][private$selectFields]
biodb.TRACE[2022-04-09 08:06:23.186][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:23.186][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:23.187][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:23.188][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.189][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.189][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.190][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.191][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.191][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.192][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.193][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.194][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:23.194][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:23.195][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.196][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.196][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.197][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.198][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:23.199][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.201][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.204][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.207][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2022-04-09 08:06:23.208][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:23.209][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:23.209][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:23.211][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:23.211][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:23.212][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:23.213][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:23.214][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.216][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.219][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:23.220][private$selectFields]
biodb.TRACE[2022-04-09 08:06:23.221][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:23.221][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:23.222][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:23.223][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.223][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.224][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.225][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.225][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.226][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.227][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.227][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.228][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:23.229][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:23.230][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.230][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.231][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.232][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.232][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:23.233][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.236][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.239][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.242][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2022-04-09 08:06:23.243][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:23.243][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:23.244][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:23.245][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:23.246][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:23.247][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:23.247][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:23.248][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.251][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.254][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:23.255][private$selectFields]
biodb.TRACE[2022-04-09 08:06:23.255][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:23.256][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:23.257][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:23.258][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.258][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.259][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.260][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.261][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.261][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.262][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.263][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.264][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:23.264][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:23.265][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.266][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.267][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.267][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.268][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:23.269][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.272][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.275][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.278][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2022-04-09 08:06:23.279][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:23.280][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:23.303][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:23.304][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:23.305][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:23.306][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:23.307][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:23.307][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:23.308][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:23.388][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:23.390][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:23.392][cch$loadFileContent] Trying to load 1 files from cache: [1]: "460e5a713fddea0c2866dcbc892dfc2b".
biodb.TRACE[2022-04-09 08:06:23.393][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:23.394][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/460e5a713fddea0c2866dcbc892dfc2b.content".
biodb.DEBUG[2022-04-09 08:06:23.396][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:23.397][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:23.397][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:23.399][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:23.400][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:23.400][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:23.401][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:23.402][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.405][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.416][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:23.420][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:23.421][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:23.422][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:23.424][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:23.424][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:23.425][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:23.426][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:23.427][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.430][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.433][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:23.435][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:23.436][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:23.437][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:23.438][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:23.439][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:23.439][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:23.440][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:23.441][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.444][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.447][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:23.450][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:23.450][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:23.451][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:23.452][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:23.453][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:23.453][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:23.454][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:23.455][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.458][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.461][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:23.464][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:23.464][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:23.465][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:23.466][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:23.467][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:23.467][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:23.468][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:23.469][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.472][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.474][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:23.477][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:23.478][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:23.479][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:23.480][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:23.480][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:23.481][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:23.482][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:23.482][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.485][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.488][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:23.491][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:23.492][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:23.492][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:23.493][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:23.494][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:23.495][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:23.495][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:23.496][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.499][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.502][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:23.505][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:23.506][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:23.506][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:23.507][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:23.508][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:23.509][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:23.509][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:23.510][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.513][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.516][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:23.519][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:23.521][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:23.521][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:23.522][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:23.523][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:23.524][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:23.525][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:23.525][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:23.526][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.529][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.532][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:23.533][private$selectFields]
biodb.TRACE[2022-04-09 08:06:23.534][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:23.534][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:23.535][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:23.536][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.537][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.537][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.543][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.544][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.545][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.546][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.547][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.549][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:23.550][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:23.550][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.551][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.552][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.553][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.553][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:23.554][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.557][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.560][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.563][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2022-04-09 08:06:23.564][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:23.565][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:23.565][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:23.566][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:23.567][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:23.568][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:23.568][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:23.569][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.572][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.575][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:23.576][private$selectFields]
biodb.TRACE[2022-04-09 08:06:23.576][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:23.577][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:23.578][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:23.578][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.579][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.580][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.581][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.581][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.582][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.583][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.583][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.584][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:23.585][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:23.586][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.586][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.587][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.588][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.588][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:23.589][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.592][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.595][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.598][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-04-09 08:06:23.599][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:23.599][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:23.600][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:23.601][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:23.602][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:23.603][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:23.603][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:23.604][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.607][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.610][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:23.611][private$selectFields]
biodb.TRACE[2022-04-09 08:06:23.611][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:23.612][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:23.613][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:23.613][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.614][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.615][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.615][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.616][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.617][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.618][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.618][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.619][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:23.620][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:23.620][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.621][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.622][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.623][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.623][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:23.624][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.627][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.630][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.634][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2022-04-09 08:06:23.634][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:23.635][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:23.637][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:23.637][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:23.638][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:23.640][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:23.640][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:23.641][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:23.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:23.732][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:23.735][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:23.736][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0908e22233c03290fae8e61cbb27ce42".
biodb.TRACE[2022-04-09 08:06:23.737][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:23.738][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0908e22233c03290fae8e61cbb27ce42.content".
biodb.DEBUG[2022-04-09 08:06:23.742][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:23.743][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:23.744][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:23.745][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:23.746][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:23.747][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:23.747][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:23.748][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.751][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.755][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:23.758][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:23.758][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:23.759][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:23.761][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:23.761][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:23.762][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:23.762][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:23.763][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.766][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.769][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:23.773][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:23.773][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:23.774][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:23.776][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:23.776][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:23.777][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:23.778][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:23.779][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.782][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.785][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:23.788][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:23.789][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:23.789][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:23.791][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:23.791][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:23.792][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:23.800][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:23.801][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.805][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.809][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:23.812][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:23.812][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:23.813][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:23.814][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:23.815][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:23.816][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:23.816][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:23.817][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.820][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.823][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:23.826][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:23.827][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:23.827][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:23.829][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:23.829][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:23.830][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:23.830][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:23.831][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.834][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.837][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:23.840][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:23.841][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:23.841][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:23.842][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:23.843][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:23.844][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:23.844][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:23.845][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.848][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.851][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:23.854][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:23.854][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:23.855][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:23.856][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:23.857][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:23.858][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:23.858][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:23.859][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.862][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.865][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:23.868][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:23.868][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:23.869][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:23.870][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:23.871][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:23.871][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:23.872][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:23.873][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.876][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.878][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:23.881][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:23.882][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:23.883][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:23.884][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:23.885][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:23.885][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:23.886][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:23.887][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.890][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.892][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:23.895][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:23.896][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:23.897][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:23.898][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:23.899][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:23.899][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:23.900][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:23.901][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.904][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.907][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:23.910][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:23.911][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:23.911][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:23.912][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:23.913][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:23.914][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:23.914][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:23.915][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.918][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.926][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:23.930][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:23.931][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:23.932][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:23.934][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:23.934][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:23.935][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:23.936][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:23.937][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.939][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.942][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:23.945][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:23.946][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:23.947][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:23.948][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:23.948][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:23.949][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:23.950][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:23.950][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.953][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.956][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:23.959][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:23.960][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:23.960][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:23.961][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:23.962][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:23.963][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:23.963][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:23.964][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.967][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.970][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:23.973][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:23.973][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:23.974][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:23.975][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:23.976][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:23.976][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:23.977][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:23.978][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.981][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.983][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:23.986][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:23.987][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:23.987][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:23.989][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:23.989][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:23.990][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:23.991][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:23.991][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.994][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.997][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:24.000][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:24.000][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:24.001][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:24.002][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:24.003][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:24.004][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:24.004][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:24.005][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.008][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.011][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:24.014][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:24.014][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:24.015][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:24.016][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:24.017][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:24.017][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:24.018][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:24.019][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.022][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.025][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:24.028][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:24.029][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:24.029][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:24.030][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:24.031][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:24.032][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:24.032][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:24.033][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.036][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.039][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:24.042][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:24.043][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:24.044][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:24.045][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:24.046][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:24.051][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:24.052][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:24.053][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.058][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.061][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:24.064][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:24.064][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:24.065][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:24.066][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:24.067][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:24.068][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:24.068][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:24.069][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.072][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.075][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:24.078][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:24.078][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:24.079][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:24.080][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:24.081][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:24.081][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:24.082][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:24.083][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.086][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.089][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:24.091][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:24.092][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:24.093][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:24.094][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:24.095][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:24.095][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:24.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:24.097][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.100][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.102][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:24.105][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:24.106][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:24.107][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:24.108][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:24.108][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:24.109][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:24.110][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:24.110][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.113][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.116][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:24.119][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:24.120][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:24.120][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:24.122][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:24.122][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:24.123][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:24.124][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:24.124][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.127][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.130][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:24.133][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:24.134][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:24.134][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:24.136][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:24.136][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:24.137][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:24.138][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:24.138][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.141][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.144][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:24.147][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:24.148][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:24.149][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:24.150][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:24.151][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:24.151][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:24.152][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:24.153][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.156][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.159][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:24.162][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:24.163][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:24.163][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:24.165][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:24.165][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:24.166][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:24.167][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:24.168][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.171][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.179][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:24.183][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:24.184][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:24.185][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:24.187][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:24.187][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:24.188][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:24.189][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:24.190][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.193][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.196][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:24.199][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:24.200][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:24.201][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:24.201][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:24.203][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:24.203][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:24.204][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:24.205][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:24.205][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.208][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.211][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:24.212][private$selectFields]
biodb.TRACE[2022-04-09 08:06:24.213][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:24.213][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:24.214][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:24.215][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.215][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.216][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.217][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.217][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.218][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.219][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.220][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.220][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:24.221][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:24.222][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.223][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.223][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.224][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.225][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:24.225][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.228][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.231][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.234][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2022-04-09 08:06:24.235][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:24.236][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:24.236][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:24.238][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:24.238][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:24.239][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:24.239][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:24.240][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.243][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.246][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:24.247][private$selectFields]
biodb.TRACE[2022-04-09 08:06:24.247][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:24.248][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:24.249][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:24.249][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.250][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.251][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.251][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.252][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.253][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.254][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.254][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.255][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:24.256][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:24.256][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.257][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.258][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.259][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.259][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:24.260][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.263][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.266][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.269][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2022-04-09 08:06:24.270][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:24.270][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:24.271][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:24.273][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:24.273][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:24.274][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:24.274][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:24.275][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.278][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.281][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:24.282][private$selectFields]
biodb.TRACE[2022-04-09 08:06:24.283][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:24.284][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:24.284][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:24.285][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.286][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.287][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.287][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.288][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.289][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.290][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.290][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.291][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:24.292][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:24.293][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.293][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.294][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.295][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.295][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:24.296][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.299][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.308][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.313][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2022-04-09 08:06:24.313][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:24.314][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:24.316][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:24.316][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:24.317][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:24.318][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:24.319][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:24.320][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:24.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:24.401][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:24.403][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:24.404][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4d5b921f88c8441be6a678700f44ffee".
biodb.TRACE[2022-04-09 08:06:24.405][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:24.406][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4d5b921f88c8441be6a678700f44ffee.content".
biodb.DEBUG[2022-04-09 08:06:24.410][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:24.411][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:24.412][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:24.413][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:24.414][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:24.414][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:24.415][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:24.416][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.419][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.428][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:24.432][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:24.433][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:24.434][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:24.435][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:24.436][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:24.437][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:24.437][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:24.438][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.441][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.444][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:24.447][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:24.448][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:24.448][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:24.450][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:24.450][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:24.451][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:24.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:24.452][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.455][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.458][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:24.461][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:24.462][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:24.462][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:24.464][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:24.464][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:24.465][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:24.465][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:24.466][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.469][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.472][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:24.475][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:24.476][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:24.477][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:24.477][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:24.479][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:24.479][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:24.480][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:24.481][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:24.481][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.484][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.487][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:24.488][private$selectFields]
biodb.TRACE[2022-04-09 08:06:24.488][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:24.489][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:24.490][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:24.491][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.491][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.492][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.493][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.493][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.494][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.495][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.495][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.496][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:24.497][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:24.498][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.498][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.499][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.500][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.500][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:24.501][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.504][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.507][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.510][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2022-04-09 08:06:24.511][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:24.512][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:24.512][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:24.514][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:24.514][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:24.515][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:24.516][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:24.516][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.519][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.522][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:24.523][private$selectFields]
biodb.TRACE[2022-04-09 08:06:24.524][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:24.524][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:24.525][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:24.526][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.527][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.527][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.528][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.529][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.530][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.530][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.531][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.532][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:24.533][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:24.533][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.534][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.535][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.536][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.536][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:24.537][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.540][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.543][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.546][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2022-04-09 08:06:24.547][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:24.553][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:24.554][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:24.556][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:24.557][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:24.558][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:24.558][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:24.560][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.562][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.565][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:24.566][private$selectFields]
biodb.TRACE[2022-04-09 08:06:24.567][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:24.568][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:24.568][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:24.569][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.570][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.570][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.571][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.572][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.573][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.573][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.574][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.575][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:24.575][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:24.576][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.577][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.577][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.578][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.579][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:24.580][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.582][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.585][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.588][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2022-04-09 08:06:24.589][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:24.590][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-04-09 08:06:24.603][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:06:24.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:06:24.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.606][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:06:24.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:06:24.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.609][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:06:24.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:06:24.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-04-09 08:06:24.613][biodb::testThat]
biodb.INFO [2022-04-09 08:06:24.613][biodb::testThat] Running test function test_annotateMzValues_additional_fields (" Additional fields are accepted in annotateMzValues() ").
biodb.INFO [2022-04-09 08:06:24.614][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:06:24.615][biodb::testThat]
biodb.TRACE[2022-04-09 08:06:24.617][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:06:24.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:06:24.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.620][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:06:24.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:06:24.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.623][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:06:24.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:06:24.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.626][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.629][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.631][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.634][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.637][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.640][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.643][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.646][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.649][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.652][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.655][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.658][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:24.663][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:24.664][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:24.665][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:24.666][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:24.667][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:24.667][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:24.668][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:24.756][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:24.758][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:24.759][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1e3885f0c8b7bc081513880959401862".
biodb.TRACE[2022-04-09 08:06:24.760][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:24.761][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1e3885f0c8b7bc081513880959401862.content".
biodb.DEBUG[2022-04-09 08:06:24.763][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:24.765][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:24.766][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4b7e19492b2d1086a5dba1710a3b39b".
biodb.TRACE[2022-04-09 08:06:24.767][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:24.768][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f4b7e19492b2d1086a5dba1710a3b39b.content".
biodb.DEBUG[2022-04-09 08:06:24.770][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:24.770][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:24.771][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:24.773][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:24.773][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:24.774][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:24.775][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:24.776][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.779][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.782][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:24.786][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:24.788][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:24.789][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d57f841033be8ab371045edb0388ed60".
biodb.TRACE[2022-04-09 08:06:24.790][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:24.791][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d57f841033be8ab371045edb0388ed60.content".
biodb.DEBUG[2022-04-09 08:06:24.792][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:24.794][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:24.794][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:24.801][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:24.802][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:24.803][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:24.804][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:24.805][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:24.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:24.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:24.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.810][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:24.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:24.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.813][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:24.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:24.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.816][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:24.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:24.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.819][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.822][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.824][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:24.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:24.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.827][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:24.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:24.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.830][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:24.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:24.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.833][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:24.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:24.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.836][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:24.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:24.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.839][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:24.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:24.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.842][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:24.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:24.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.845][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:24.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:24.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.848][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.850][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.853][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.856][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.859][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:24.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:24.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.862][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:24.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:24.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.865][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:24.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:24.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.868][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:24.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:24.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.871][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:24.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:24.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.874][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:24.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:24.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.876][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:24.877][private$selectFields]
biodb.TRACE[2022-04-09 08:06:24.878][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:24.878][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:24.879][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:24.880][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:24.881][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:24.881][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.882][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.883][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:24.884][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:24.884][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.885][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.886][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.887][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.887][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.888][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.889][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:24.889][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:24.890][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.891][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.892][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:24.892][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:24.893][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.894][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.895][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:24.895][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:24.896][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.897][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.898][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:24.899][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:24.899][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.900][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.901][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.902][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.902][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.903][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.904][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.905][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.906][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.906][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.907][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:24.908][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:24.909][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.909][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.910][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:24.911][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:24.912][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.912][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.913][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:24.914][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:24.915][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.915][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.916][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:24.917][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:24.918][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.918][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.919][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:24.920][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:24.921][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.927][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.928][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.929][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.930][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.931][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.932][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:24.933][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:24.934][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.935][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.935][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:24.936][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:24.937][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.938][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.938][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:24.939][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:24.940][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.941][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.941][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:24.942][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:24.943][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.944][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.944][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.945][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.946][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.946][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.947][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.948][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.949][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.949][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.950][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:24.951][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:24.951][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.952][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.953][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:24.954][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:24.954][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.955][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.956][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:24.957][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:24.957][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.958][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.959][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:24.959][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:24.960][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:24.961][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:24.962][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.962][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.963][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:24.964][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:24.965][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.965][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.966][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.967][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.967][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.968][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.969][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:24.970][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:24.970][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.971][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.972][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:24.972][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:24.973][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.974][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.974][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:24.975][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:24.976][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.977][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.977][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:24.978][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:24.979][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.979][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.980][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.981][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.982][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.982][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.983][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.984][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.984][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.985][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.986][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:24.986][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:24.987][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.988][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.989][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:24.989][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:24.990][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.991][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.991][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:24.992][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:24.993][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.994][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.994][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:06:24.995][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:24.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:24.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:24.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:25.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.001][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:25.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:25.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.004][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:25.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:25.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.007][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:25.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:25.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.010][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:25.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:25.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.013][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:25.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:25.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.016][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:25.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:25.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.019][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:25.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:25.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.022][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:25.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:25.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.025][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:25.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:25.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.028][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:25.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:25.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.032][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:25.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:25.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.035][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:25.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:25.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.038][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:25.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:25.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.041][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:25.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:25.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.044][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:25.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:25.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.047][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:25.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:25.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.056][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:25.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:25.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.061][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:25.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:25.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.064][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:25.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:25.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.067][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.070][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.073][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.076][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:25.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:25.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.078][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:25.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:25.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.081][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:25.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:25.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.085][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:25.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:25.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.087][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:25.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:25.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.090][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:25.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:25.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.093][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:25.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:25.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.096][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:25.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:25.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.099][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:25.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:25.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.103][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:25.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:25.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.105][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:25.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:25.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.108][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:25.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:25.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.117][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2022-04-09 08:06:25.118][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:25.119][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:25.120][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:25.121][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:25.121][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:25.123][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:25.124][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:25.124][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:25.125][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:25.217][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:25.219][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:25.220][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3f1d442725dcc6ae0abe5c87cfaad307".
biodb.TRACE[2022-04-09 08:06:25.221][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:25.222][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3f1d442725dcc6ae0abe5c87cfaad307.content".
biodb.DEBUG[2022-04-09 08:06:25.224][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:25.225][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:25.226][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:25.227][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:25.228][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:25.228][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:25.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:25.230][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.233][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.236][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:25.239][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:25.240][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:25.241][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:25.242][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:25.243][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:25.243][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:25.244][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:25.245][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.248][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.251][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:25.255][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:25.258][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:25.259][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ef9eda9e8faa68b5f4644b265e186796".
biodb.TRACE[2022-04-09 08:06:25.260][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:25.261][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef9eda9e8faa68b5f4644b265e186796.content".
biodb.DEBUG[2022-04-09 08:06:25.263][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:25.264][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:25.264][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:25.266][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:25.266][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:25.267][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:25.268][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:25.269][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.272][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.275][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:25.278][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:25.279][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:25.280][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:25.281][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:25.282][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:25.283][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:25.284][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:25.285][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.288][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.291][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:25.294][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:25.295][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:25.296][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:25.297][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:25.298][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:25.299][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:25.299][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:25.300][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.303][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.313][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:25.318][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:25.319][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:25.320][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:25.320][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:25.322][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:25.323][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:25.323][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:25.324][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:25.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:25.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:25.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.328][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:25.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:25.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.331][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:25.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:25.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.334][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:25.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:25.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.337][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:25.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:25.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.340][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:25.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:25.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.343][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:25.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:25.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.346][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:25.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:25.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.350][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:25.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:25.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.353][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:25.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:25.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.356][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:25.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:25.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.359][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:25.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:25.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.362][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:25.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:25.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.365][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:25.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:25.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.368][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.371][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.374][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:25.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:25.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.377][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:25.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:25.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.380][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:25.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:25.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.383][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:25.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:25.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.386][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:25.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:25.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.389][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:25.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:25.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.392][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:25.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:25.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.395][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:25.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:25.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.398][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:25.399][private$selectFields]
biodb.TRACE[2022-04-09 08:06:25.400][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:25.400][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:25.401][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:25.402][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:25.403][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:25.403][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.404][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.405][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:25.406][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:25.406][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.407][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.408][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:25.409][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:25.409][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.410][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.411][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:25.412][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:25.413][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.413][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.414][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:25.415][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:25.416][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.416][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.417][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:25.418][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:25.419][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.420][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.420][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:25.421][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:25.422][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.423][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.423][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.424][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.425][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.426][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.426][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:25.427][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:25.428][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.429][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.429][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:25.430][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:25.431][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.432][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.433][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:25.433][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:25.434][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.441][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.442][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:25.443][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:25.444][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.445][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.446][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:25.447][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:25.448][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.449][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.449][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:25.450][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:25.451][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.452][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.452][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:25.453][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:25.454][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.455][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.455][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:25.456][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:25.457][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.458][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.458][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:25.459][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:25.460][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.461][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.461][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:25.462][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:25.463][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.463][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.464][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:25.465][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:25.466][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.466][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.467][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.468][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.469][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.469][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.470][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:25.471][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:25.472][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.472][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.473][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:25.474][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:25.475][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.475][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.476][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:25.477][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:25.477][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.478][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.479][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:25.480][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:25.480][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.481][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.482][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:25.483][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:25.483][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:25.484][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:25.485][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.486][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.486][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:25.487][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:25.488][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.489][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.489][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:25.490][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:25.491][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.491][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.492][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:25.493][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:25.494][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.494][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.495][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:25.496][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:25.496][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.497][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.498][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:25.499][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:25.499][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.500][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.501][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:25.501][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:25.502][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.503][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.504][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.504][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.505][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.506][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.506][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:25.507][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:25.508][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.509][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.509][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:25.510][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:25.511][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.512][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.512][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:25.513][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:25.514][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.514][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.515][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:25.516][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:25.517][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.517][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.518][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:06:25.519][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:25.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:25.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.522][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:25.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:25.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.525][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:25.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:25.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.528][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:25.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:25.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.531][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:25.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:25.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.534][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:25.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:25.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.537][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:25.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:25.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.541][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:25.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:25.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.544][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:25.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:25.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.547][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:25.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:25.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.550][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:25.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:25.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.553][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:25.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:25.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.556][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:25.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:25.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.559][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:25.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:25.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.568][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:25.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:25.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.573][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:25.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:25.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.576][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:25.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:25.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.579][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:25.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:25.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.583][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:25.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:25.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.585][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:25.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:25.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.588][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:25.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:25.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.591][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.594][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.597][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.600][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:25.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:25.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.603][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:25.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:25.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.606][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:25.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:25.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.609][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:25.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:25.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.612][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:25.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:25.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.615][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:25.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:25.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.618][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:25.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:25.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.621][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:25.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:25.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.624][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:25.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:25.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.627][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:25.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:25.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.630][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:25.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:25.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.633][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:25.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:25.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.640][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2022-04-09 08:06:25.641][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:25.642][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:25.642][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:25.644][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:25.644][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:25.645][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:25.646][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:25.647][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:25.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:25.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:25.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:25.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.653][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:25.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:25.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.656][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:25.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:25.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.659][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:25.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:25.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.662][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:25.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:25.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.665][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:25.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:25.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.668][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:25.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:25.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.671][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:25.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:25.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.674][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:25.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:25.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.677][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:25.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:25.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.680][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:25.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:25.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.684][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:25.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:25.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.687][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:25.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:25.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.696][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.700][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.703][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:25.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:25.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.706][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:25.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:25.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.709][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:25.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:25.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.712][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:25.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:25.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.715][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:25.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:25.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.718][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:25.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:25.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.721][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:25.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:25.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.724][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:25.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:25.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.727][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:25.728][private$selectFields]
biodb.TRACE[2022-04-09 08:06:25.728][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:25.729][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:25.730][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:25.730][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:25.731][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:25.732][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.733][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.733][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:25.734][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:25.735][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.736][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.736][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:25.737][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:25.738][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.738][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.739][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:25.740][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:25.741][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.741][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.742][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:25.743][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:25.743][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.744][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.745][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:25.746][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:25.746][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.747][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.748][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:25.748][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:25.749][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.750][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.751][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.751][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.752][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.753][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.753][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:25.754][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:25.755][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.756][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.756][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:25.757][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:25.758][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.758][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.759][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:25.760][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:25.761][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.761][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.762][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:25.763][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:25.763][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.764][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.765][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:25.766][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:25.766][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.767][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.768][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:25.769][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:25.769][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.770][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.771][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:25.771][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:25.772][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.773][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.774][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:25.774][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:25.775][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.776][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.776][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:25.777][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:25.778][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.779][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.779][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:25.780][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:25.781][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.782][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.782][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:25.783][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:25.784][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.785][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.785][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.786][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.787][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.788][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.788][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:25.789][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:25.790][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.791][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.791][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:25.792][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:25.793][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.794][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.794][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:25.795][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:25.796][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.797][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.797][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:25.798][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:25.799][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.800][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.801][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:25.801][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:25.802][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:25.803][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:25.804][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.804][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.805][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:25.806][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:25.807][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.807][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.808][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:25.809][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:25.810][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.810][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.811][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:25.812][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:25.818][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.819][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.820][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:25.821][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:25.823][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.824][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.825][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:25.826][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:25.826][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.827][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.828][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:25.829][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:25.830][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.830][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.831][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.832][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.833][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.833][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.834][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:25.835][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:25.835][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.836][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.837][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:25.838][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:25.838][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.839][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.840][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:25.840][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:25.841][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.842][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.842][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:25.843][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:25.844][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.845][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.845][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:06:25.846][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:25.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:25.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.849][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:25.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:25.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.852][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:25.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:25.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.855][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:25.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:25.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.858][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:25.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:25.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.861][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:25.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:25.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.864][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:25.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:25.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.867][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:25.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:25.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.870][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:25.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:25.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.873][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:25.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:25.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.876][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:25.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:25.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.879][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:25.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:25.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.882][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:25.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:25.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.884][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:25.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:25.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.887][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:25.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:25.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.890][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:25.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:25.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.893][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:25.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:25.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.896][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:25.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:25.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.899][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:25.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:25.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.902][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:25.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:25.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.905][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:25.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:25.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.908][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.911][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.914][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.917][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:25.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:25.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.920][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:25.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:25.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.923][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:25.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:25.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.927][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:25.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:25.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.930][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:25.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:25.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.933][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:25.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:25.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.936][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:25.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:25.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.945][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:25.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:25.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.949][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:25.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:25.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.953][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:25.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:25.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.956][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:25.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:25.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.959][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:25.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:25.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.966][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [16587, 0, 16587, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)9-8-22(31)26(5,33)21-7-11-27(34)16-12-18(28)17-13-19(29)20(30)14-24(17,3)15(16)6-10-25(21,27)4/h12,15,17,19-22,29-34H,6-11,13-14H2,1-5H3/t15-,17-,19+,20-,21-,22+,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2022-04-09 08:06:25.967][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:25.968][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:25.969][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:25.970][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:25.971][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:25.971][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:25.972][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:25.973][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:25.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:25.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:25.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:25.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.979][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:25.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:25.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.982][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:25.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:25.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.984][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:25.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:25.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.987][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:25.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:25.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.990][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:25.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:25.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.993][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:25.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:25.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.996][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:25.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:25.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.999][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:25.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:26.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.001][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:26.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:26.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.004][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:26.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:26.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.007][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:26.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:26.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.010][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:26.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:26.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.013][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.016][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.018][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:26.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:26.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.021][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:26.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:26.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.024][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:26.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:26.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.027][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:26.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:26.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.030][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:26.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:26.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.033][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:26.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:26.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.036][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:26.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:26.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.039][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:26.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:26.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.042][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:26.043][private$selectFields]
biodb.TRACE[2022-04-09 08:06:26.043][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:26.044][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:26.045][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:26.046][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:26.046][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:26.047][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.048][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.049][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:26.049][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:26.050][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.051][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.051][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:26.052][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:26.053][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.054][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.054][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:26.055][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:26.056][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.057][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.057][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:26.058][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:26.059][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.060][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.060][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:26.061][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:26.265][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.265][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.266][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:26.267][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:26.268][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.268][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.269][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.270][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.271][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.271][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.272][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:26.273][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:26.273][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.274][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.275][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:26.275][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:26.276][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.277][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.278][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:26.278][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:26.279][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.280][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.280][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:26.281][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:26.282][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.282][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.283][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:26.284][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:26.285][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.285][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.286][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:26.287][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:26.287][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.288][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.289][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:26.290][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:26.290][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.291][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.292][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:26.292][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:26.293][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.294][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.294][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:26.295][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:26.296][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.297][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.297][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:26.298][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:26.299][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.299][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.300][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:26.301][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:26.302][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.302][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.303][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.304][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.304][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.305][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.306][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:26.306][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:26.307][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.308][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.308][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:26.309][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:26.310][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.311][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.311][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:26.312][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:26.313][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.313][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.314][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:26.315][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:26.315][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.316][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.317][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:06:26.318][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:06:26.318][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:26.319][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:26.320][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.320][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.321][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:26.322][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:26.322][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.323][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.324][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:26.325][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:26.325][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.326][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.327][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:26.327][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:26.328][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.329][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.329][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:26.330][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:26.331][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.332][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.332][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:26.333][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:26.334][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.334][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.335][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.336][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.336][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.337][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.338][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:26.339][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:26.339][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.340][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.341][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:26.341][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:26.342][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.343][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.343][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:26.344][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:26.345][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.346][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.346][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:26.347][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:26.348][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.349][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.349][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:06:26.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:26.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:26.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.353][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:26.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:26.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.356][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:26.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:26.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.359][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:26.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:26.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.362][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:26.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:26.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.365][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:26.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:26.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.368][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:26.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:26.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.371][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:26.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:26.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.374][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:26.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:26.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.377][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:26.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:26.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.379][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:26.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:26.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.382][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:26.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:26.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.385][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:26.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:26.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.388][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:26.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:26.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.392][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:26.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:26.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.395][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:26.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:26.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.398][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:26.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:26.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.401][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:26.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:26.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.405][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.408][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.411][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.415][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:26.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:26.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.418][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:26.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:26.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.421][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:26.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:26.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.424][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:26.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:26.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.428][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:26.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:26.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.431][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:26.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:26.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.435][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:26.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:26.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.438][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:26.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:26.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.441][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:26.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:26.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.445][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:26.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:26.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.448][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:26.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:26.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.452][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:26.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:26.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.460][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [19804, 0, 19804, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)8-5-9-26(33,15-28)22-7-11-27(34)17-12-19(29)18-13-20(30)21(31)14-24(18,3)16(17)6-10-25(22,27)4/h12,16,18,20-22,28,30-34H,5-11,13-15H2,1-4H3/t16-,18-,20+,21-,22-,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2022-04-09 08:06:26.461][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:26.462][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:26.465][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:26.465][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:26.466][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:26.468][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:26.469][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:26.469][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:26.470][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:26.562][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:26.564][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:26.566][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f077e512e38828ca0970d6a9a2df40b1".
biodb.TRACE[2022-04-09 08:06:26.566][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:26.567][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f077e512e38828ca0970d6a9a2df40b1.content".
biodb.DEBUG[2022-04-09 08:06:26.570][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:26.570][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:26.571][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:26.572][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:26.573][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:26.574][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:26.574][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:26.575][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.579][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.582][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:26.585][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:26.586][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:26.586][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:26.588][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:26.588][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:26.589][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:26.590][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:26.591][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.594][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.597][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:26.600][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:26.601][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:26.602][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:26.603][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:26.604][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:26.605][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:26.605][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:26.606][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.610][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.613][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:26.616][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:26.617][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:26.617][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:26.619][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:26.619][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:26.620][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:26.621][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:26.622][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.625][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.628][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:26.631][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:26.631][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:26.632][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:26.633][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:26.634][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:26.635][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:26.635][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:26.636][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.639][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.642][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:26.645][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:26.646][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:26.647][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:26.648][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:26.649][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:26.649][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:26.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:26.651][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.654][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.657][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:26.661][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:26.661][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:26.662][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:26.663][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:26.664][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:26.665][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:26.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:26.666][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.669][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.673][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:26.676][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:26.679][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:26.680][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1f74ce81a905644d346321032fe47e5f".
biodb.TRACE[2022-04-09 08:06:26.681][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:26.682][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1f74ce81a905644d346321032fe47e5f.content".
biodb.DEBUG[2022-04-09 08:06:26.684][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:26.684][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:26.685][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:26.687][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:26.687][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:26.688][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:26.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:26.690][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.693][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.696][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:26.699][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:26.700][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:26.700][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:26.702][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:26.703][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:26.703][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:26.704][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:26.705][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.708][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.711][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:26.715][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:26.717][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:26.718][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d7672f179ff5d0339b4462dafc99279b".
biodb.TRACE[2022-04-09 08:06:26.719][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:26.720][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d7672f179ff5d0339b4462dafc99279b.content".
biodb.DEBUG[2022-04-09 08:06:26.725][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:26.725][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:26.726][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:26.727][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:26.728][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:26.729][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:26.735][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:26.736][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.739][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.742][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:26.745][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:26.745][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:26.746][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:26.748][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:26.748][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:26.749][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:26.750][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:26.751][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.754][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.757][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:26.760][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:26.761][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:26.762][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:26.762][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:26.764][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:26.764][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:26.765][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:26.766][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:26.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:26.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:26.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.770][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:26.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:26.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.773][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:26.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:26.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.775][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:26.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:26.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.778][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:26.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:26.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.781][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:26.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:26.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.784][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:26.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:26.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.787][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:26.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:26.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.790][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:26.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:26.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.793][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:26.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:26.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.795][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:26.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:26.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.798][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:26.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:26.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.801][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:26.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:26.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.804][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:26.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:26.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.807][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.810][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.813][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:26.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:26.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.816][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:26.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:26.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.818][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:26.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:26.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.821][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:26.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:26.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.824][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:26.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:26.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.827][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:26.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:26.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.830][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:26.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:26.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.833][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:26.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:26.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.836][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:26.837][private$selectFields]
biodb.TRACE[2022-04-09 08:06:26.838][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:26.839][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:26.839][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:26.840][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:26.841][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:26.842][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.842][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.843][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:26.844][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:26.845][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.845][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.846][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:26.847][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:26.848][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.848][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.849][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:26.850][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:26.851][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.851][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.852][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:26.853][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:26.854][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.854][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.855][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:26.856][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:26.856][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.857][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.858][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:26.859][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:26.859][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.860][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.861][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.862][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.862][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.863][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.864][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:26.865][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:26.865][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.866][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.867][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:26.867][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:26.868][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.869][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.869][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:26.870][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:26.871][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.871][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.872][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:26.873][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:26.873][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.874][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.875][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:26.876][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:26.876][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.877][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.878][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:26.879][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:26.879][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.880][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.881][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:26.882][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:26.882][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.883][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.884][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:26.885][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:26.885][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.886][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.887][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:26.888][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:26.888][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.889][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.890][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:26.891][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:26.891][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.892][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.893][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:26.893][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:26.894][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.895][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.896][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.896][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.897][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.898][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.899][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:26.899][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:26.900][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.901][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.902][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:26.902][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:26.903][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.904][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.905][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:26.905][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:26.906][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.907][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.908][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:26.908][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:26.909][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.910][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.911][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:26.911][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:26.912][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:26.913][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:26.914][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.914][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.915][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:26.916][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:26.917][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.917][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.918][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:26.919][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:26.920][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.920][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.921][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:26.922][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:26.923][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.923][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.924][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:26.925][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:26.925][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.926][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.927][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:26.928][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:26.928][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.929][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.930][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:26.931][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:26.931][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.932][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.933][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.934][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.934][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.935][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.936][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:26.937][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:26.937][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.938][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.939][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:26.940][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:26.940][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.941][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.942][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:26.943][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:26.943][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.944][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.945][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:26.946][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:26.946][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.947][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.948][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:06:26.949][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:26.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:26.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.952][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:26.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:26.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:26.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:26.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.963][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:26.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:26.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.965][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:26.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:26.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.968][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:26.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:26.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.971][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:26.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:26.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.975][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:26.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:26.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.978][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:26.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:26.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.981][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:26.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:26.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.984][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:26.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:26.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.987][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:26.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:26.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.995][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:26.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:26.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.998][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:26.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:27.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.002][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:27.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:27.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.006][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:27.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:27.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.009][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:27.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:27.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.016][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:27.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:27.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.019][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:27.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:27.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.026][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:27.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:27.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.029][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:27.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:27.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.032][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.035][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.039][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.042][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:27.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:27.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.045][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:27.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:27.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.048][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:27.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:27.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.051][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:27.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:27.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.054][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:27.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:27.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.057][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:27.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:27.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.060][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:27.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:27.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.063][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:27.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:27.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.067][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:27.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:27.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.070][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:27.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:27.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.073][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:27.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:27.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.080][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:27.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:27.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.090][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [7799, 0, 7799, C16H31N2O8P, InChI=1S/C16H28N2O4.H3O4P/c1-5-12(6-2)22-14-9-11(16(20)21-7-3)8-13(17)15(14)18-10(4)19;1-5(2,3)4/h9,12-15H,5-8,17H2,1-4H3,(H,18,19);(H3,1,2,3,4)/t13-,14+,15+;/m0./s1, ...].
biodb.DEBUG[2022-04-09 08:06:27.091][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:27.092][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:27.093][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:27.095][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:27.096][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:27.097][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:27.097][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:27.098][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:27.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:27.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.101][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:27.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:27.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.105][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:27.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:27.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.108][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:27.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:27.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.111][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.114][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.118][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:27.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:27.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.121][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:27.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:27.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.124][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:27.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:27.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.127][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:27.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:27.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.130][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:27.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:27.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.134][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:27.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:27.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.137][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:27.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:27.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.140][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:27.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:27.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.143][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.146][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.150][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:27.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:27.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.153][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:27.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:27.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.156][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:27.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:27.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.159][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:27.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:27.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.162][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:27.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:27.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.166][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:27.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:27.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.169][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:27.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:27.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.172][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:27.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:27.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.175][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:27.176][private$selectFields]
biodb.TRACE[2022-04-09 08:06:27.177][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:27.178][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:27.178][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:27.179][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:27.180][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:27.181][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.181][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.182][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:27.183][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:27.184][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.185][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.185][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.186][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.187][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.188][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.189][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:27.189][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:27.190][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.191][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.192][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:27.193][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:27.193][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.194][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.195][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:27.196][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:27.197][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.197][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.198][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:27.199][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:27.200][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.200][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.201][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.202][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.203][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.203][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.204][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:27.205][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:27.206][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.207][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.207][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:27.208][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:27.209][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.210][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.210][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:27.211][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:27.212][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.213][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.213][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:27.214][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:27.215][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.216][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.217][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:27.222][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:27.223][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.224][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.224][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:27.225][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:27.226][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.226][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.227][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.228][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.229][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.229][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.230][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:27.231][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:27.231][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.232][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.233][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:27.234][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:27.234][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.235][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.236][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:27.236][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:27.237][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.238][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.239][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:27.239][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:27.240][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.241][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.241][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.242][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.243][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.244][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.244][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:27.245][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:27.246][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.246][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.247][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:27.248][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:27.249][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.249][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.250][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:27.251][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:27.252][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.252][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.253][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:27.254][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:27.255][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.255][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.256][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:06:27.257][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:06:27.258][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:27.258][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:27.259][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.260][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.260][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:27.261][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:27.262][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.263][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.263][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.264][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.265][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.265][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.266][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:27.267][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:27.268][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.268][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.269][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:27.270][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:27.271][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.271][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.272][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:27.273][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:27.273][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.274][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.275][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.276][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.276][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.277][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.278][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:27.278][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:27.279][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.280][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.281][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:27.281][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:27.282][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.283][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.283][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:27.284][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:27.285][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.286][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.286][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:27.287][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:27.288][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.288][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.289][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:06:27.290][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:27.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:27.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.293][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:27.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:27.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.296][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:27.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:27.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.299][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:27.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:27.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.302][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:27.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:27.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.305][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:27.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:27.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.308][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.311][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.314][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.317][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:27.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:27.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.320][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:27.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:27.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.324][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:27.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:27.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.327][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:27.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:27.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.330][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:27.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:27.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.333][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:27.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:27.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.336][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:27.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:27.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.339][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:27.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:27.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.342][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:27.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:27.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.345][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.348][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.351][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.354][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:27.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:27.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.356][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:27.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:27.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.359][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:27.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:27.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.362][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:27.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:27.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.365][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:27.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:27.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.368][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:27.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:27.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.372][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:27.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:27.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.375][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:27.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:27.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.378][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:27.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:27.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.381][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:27.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:27.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.384][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:27.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:27.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.387][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:27.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:27.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.394][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [71954, 0, 71954, C18H21F3N6O2, InChI=1S/C18H21F3N6O2/c19-18(20,21)13-9-15(22)23-11-12(13)14-10-16(26-1-5-28-6-2-26)25-17(24-14)27-3-7-29-8-4-27/h9-11H,1-8H2,(H2,22,23), ...].
biodb.DEBUG[2022-04-09 08:06:27.395][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:27.396][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:27.397][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:27.398][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:27.399][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:27.400][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:27.400][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:27.401][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:27.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:27.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.405][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:27.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:27.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.408][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:27.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:27.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.411][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:27.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:27.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.414][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.417][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.421][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:27.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:27.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.424][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:27.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:27.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.427][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:27.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:27.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.430][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:27.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:27.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.433][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:27.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:27.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.436][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:27.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:27.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.439][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:27.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:27.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.442][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:27.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:27.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.446][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.453][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.456][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:27.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:27.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.459][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:27.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:27.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.462][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:27.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:27.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.465][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:27.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:27.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.468][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:27.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:27.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.475][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:27.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:27.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.478][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:27.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:27.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.481][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:27.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:27.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.485][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:27.485][private$selectFields]
biodb.TRACE[2022-04-09 08:06:27.486][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:27.487][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:27.487][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:27.488][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:27.489][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:27.490][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.490][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.491][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:27.492][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:27.493][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.494][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.494][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.495][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.496][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.496][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.497][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:27.498][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:27.499][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.499][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.500][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:27.501][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:27.502][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.502][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.503][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:27.504][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:27.505][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.505][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.506][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:27.507][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:27.508][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.508][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.509][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.510][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.511][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.511][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.512][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:27.513][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:27.514][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.514][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.515][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:27.516][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:27.516][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.517][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.518][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:27.519][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:27.519][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.520][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.521][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:27.522][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:27.522][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.523][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.524][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:27.525][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:27.526][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.526][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.527][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:27.528][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:27.529][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.529][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.530][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.531][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.531][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.532][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.533][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:27.534][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:27.535][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.535][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.536][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:27.537][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:27.538][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.538][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.539][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:27.540][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:27.541][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.541][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.542][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:27.543][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:27.544][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.545][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.545][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.546][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.547][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.548][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.549][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:27.550][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:27.550][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.551][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.552][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:27.553][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:27.554][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.554][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.555][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:27.556][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:27.557][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.557][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.558][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:27.559][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:27.560][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.561][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.561][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:27.562][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:27.563][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:27.564][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:27.565][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.565][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.566][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:27.567][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:27.568][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.569][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.569][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.570][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.571][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.572][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.573][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:27.573][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:27.574][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.575][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.576][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:27.577][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:27.577][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.578][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.579][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:27.580][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:27.580][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.581][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.582][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:27.583][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:27.583][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.584][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.585][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.586][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.586][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.587][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.588][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:27.589][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:27.590][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.590][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.591][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:27.592][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:27.593][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.593][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.594][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:27.595][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:27.595][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.596][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.597][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:27.598][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:27.598][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.599][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.600][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:06:27.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:27.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:27.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.604][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:27.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:27.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.607][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:27.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:27.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.610][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:27.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:27.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.614][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:27.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:27.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.617][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:27.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:27.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.620][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.623][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.626][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.630][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:27.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:27.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.633][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:27.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:27.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.636][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:27.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:27.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.639][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:27.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:27.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.642][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:27.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:27.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.645][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:27.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:27.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.648][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:27.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:27.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.651][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:27.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:27.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.654][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:27.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:27.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.657][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:27.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:27.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.660][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:27.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:27.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.663][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:27.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:27.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.666][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.669][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.672][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.675][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:27.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:27.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.678][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:27.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:27.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.681][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:27.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:27.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.689][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:27.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:27.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.692][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:27.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:27.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.695][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:27.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:27.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.698][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:27.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:27.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.701][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:27.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:27.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.703][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:27.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:27.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.706][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:27.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:27.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.709][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:27.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:27.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.712][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:27.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:27.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.719][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [3017, 0, 3017, C16H18N4O7S, InChI=1S/C16H18N4O7S/c1-25-12-8-13(26-2)18-15(17-12)19-16(22)20-28(23,24)9-10-6-4-5-7-11(10)14(21)27-3/h4-8H,9H2,1-3H3,(H2,17,18,19,20,22), ...].
biodb.DEBUG[2022-04-09 08:06:27.720][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:27.721][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:27.726][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:27.727][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:27.728][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:27.729][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:27.729][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:27.730][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:27.731][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:27.812][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:27.814][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:27.815][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1e3885f0c8b7bc081513880959401862".
biodb.TRACE[2022-04-09 08:06:27.816][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:27.817][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1e3885f0c8b7bc081513880959401862.content".
biodb.DEBUG[2022-04-09 08:06:27.820][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:27.822][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:27.823][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4b7e19492b2d1086a5dba1710a3b39b".
biodb.TRACE[2022-04-09 08:06:27.823][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:27.824][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f4b7e19492b2d1086a5dba1710a3b39b.content".
biodb.DEBUG[2022-04-09 08:06:27.826][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:27.827][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:27.828][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:27.829][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:27.830][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:27.830][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:27.831][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:27.832][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.835][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.838][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:27.842][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:27.844][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:27.845][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d57f841033be8ab371045edb0388ed60".
biodb.TRACE[2022-04-09 08:06:27.845][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:27.846][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d57f841033be8ab371045edb0388ed60.content".
biodb.DEBUG[2022-04-09 08:06:27.848][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:27.849][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:27.850][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:27.851][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:27.852][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:27.853][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:27.853][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:27.854][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:27.855][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:27.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:27.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:27.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:27.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.861][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:27.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:27.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.864][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:27.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:27.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.867][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.870][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.873][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:27.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:27.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.876][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:27.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:27.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.879][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:27.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:27.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.882][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:27.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:27.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.885][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:27.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:27.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.888][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:27.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:27.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.891][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:27.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:27.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.894][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:27.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:27.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.897][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.900][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.903][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:27.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:27.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.911][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:27.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:27.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.914][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:27.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:27.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.916][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:27.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:27.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.919][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:27.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:27.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.922][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:27.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:27.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.925][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:27.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:27.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.928][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:27.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:27.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.931][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:27.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:27.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.933][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:27.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:27.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.936][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:27.937][private$selectFields]
biodb.TRACE[2022-04-09 08:06:27.938][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:27.938][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:27.939][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:27.940][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:27.941][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:27.941][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.942][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.943][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:27.943][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:27.944][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.945][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.946][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.946][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.947][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.948][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.948][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:27.949][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:27.950][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.951][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.951][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:27.952][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:27.953][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.953][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.954][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:27.955][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:27.955][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.956][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.957][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:27.958][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:27.958][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.959][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.960][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.961][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.961][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.962][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.963][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:27.963][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:27.964][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.965][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.966][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:27.966][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:27.967][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.968][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.968][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:27.969][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:27.970][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.971][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.971][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:27.972][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:27.973][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.973][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.974][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:27.975][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:27.976][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.976][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.977][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:27.978][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:27.979][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.979][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.980][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:27.981][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:27.981][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.982][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.983][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.984][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.984][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.985][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.986][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:27.987][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:27.987][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.988][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.989][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:27.990][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:27.990][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.991][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.992][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:27.993][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:27.993][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.994][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.995][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:27.995][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:27.996][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.997][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.998][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.998][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.999][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.000][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.001][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:28.001][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:28.002][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.003][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.003][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:28.004][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:28.005][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.006][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.007][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:28.007][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:28.008][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.009][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.010][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:28.011][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:28.011][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.012][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.013][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:28.014][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:28.014][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.015][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.016][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:28.017][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:28.017][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:28.018][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:28.019][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.020][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.020][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:28.021][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:28.022][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.023][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.023][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.024][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.025][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.026][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.026][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:28.027][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:28.028][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.029][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.029][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:28.030][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:28.031][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.031][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.032][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:28.033][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:28.034][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.034][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.035][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:28.036][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:28.037][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.037][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.038][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.039][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.039][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.040][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.041][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:28.041][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:28.042][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.043][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.043][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:28.044][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:28.045][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.045][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.046][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:28.047][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:28.048][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.048][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.049][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:28.050][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:28.051][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.051][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.052][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:06:28.053][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:28.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:28.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.056][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:28.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:28.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.059][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:28.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:28.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.062][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:28.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:28.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.065][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:28.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:28.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.068][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:28.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:28.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.071][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.074][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.077][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.080][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:28.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:28.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.083][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:28.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:28.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.086][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:28.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:28.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.089][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:28.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:28.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.092][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:28.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:28.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.095][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:28.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:28.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.098][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:28.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:28.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.102][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:28.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:28.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.104][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:28.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:28.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.108][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:28.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:28.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.111][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:28.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:28.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.114][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:28.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:28.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.117][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.120][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.123][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.126][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:28.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:28.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.134][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:28.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:28.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.137][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:28.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:28.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.139][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:28.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:28.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.142][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:28.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:28.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.145][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:28.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:28.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.148][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:28.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:28.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.151][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:28.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:28.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.154][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:28.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:28.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.157][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:28.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:28.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.160][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:28.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:28.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.162][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:28.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:28.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.170][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2022-04-09 08:06:28.170][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:28.171][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:28.173][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:28.174][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:28.174][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:28.176][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:28.177][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:28.177][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:28.178][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:28.263][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:28.265][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:28.267][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3f1d442725dcc6ae0abe5c87cfaad307".
biodb.TRACE[2022-04-09 08:06:28.268][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:28.269][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3f1d442725dcc6ae0abe5c87cfaad307.content".
biodb.DEBUG[2022-04-09 08:06:28.271][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:28.271][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:28.272][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:28.274][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:28.274][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:28.275][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:28.276][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:28.277][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.280][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.283][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:28.287][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:28.287][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:28.288][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:28.290][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:28.290][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:28.291][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:28.292][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:28.293][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.296][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.299][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:28.303][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:28.306][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:28.307][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ef9eda9e8faa68b5f4644b265e186796".
biodb.TRACE[2022-04-09 08:06:28.308][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:28.309][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef9eda9e8faa68b5f4644b265e186796.content".
biodb.DEBUG[2022-04-09 08:06:28.311][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:28.312][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:28.313][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:28.314][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:28.315][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:28.316][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:28.316][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:28.317][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.321][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.324][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:28.327][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:28.328][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:28.328][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:28.330][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:28.330][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:28.331][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:28.332][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:28.333][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.336][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.339][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:28.342][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:28.343][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:28.343][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:28.345][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:28.345][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:28.346][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:28.347][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:28.348][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.351][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.354][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:28.357][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:28.359][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:28.359][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:28.365][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:28.367][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:28.367][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:28.368][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:28.369][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:28.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:28.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:28.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:28.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:28.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.375][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:28.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:28.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.378][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:28.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:28.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.381][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.384][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.387][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:28.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:28.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.390][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:28.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:28.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.393][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:28.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:28.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.396][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:28.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:28.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.399][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:28.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:28.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.402][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:28.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:28.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.405][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:28.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:28.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.408][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:28.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:28.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.411][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.414][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.417][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:28.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:28.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.420][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:28.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:28.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.423][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:28.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:28.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.426][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:28.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:28.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.429][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:28.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:28.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.432][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:28.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:28.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.434][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:28.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:28.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.438][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:28.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:28.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.440][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:28.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:28.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.443][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:28.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:28.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.446][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:28.447][private$selectFields]
biodb.TRACE[2022-04-09 08:06:28.448][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:28.448][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:28.449][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:28.450][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:28.451][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:28.451][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.452][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.453][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:28.454][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:28.454][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.455][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.456][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.457][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.457][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.458][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.459][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:28.460][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:28.460][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.461][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.462][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:28.463][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:28.463][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.464][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.465][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:28.466][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:28.466][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.467][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.468][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:28.469][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:28.470][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.470][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.471][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.472][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.473][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.473][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.474][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:28.475][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:28.475][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.476][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.477][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:28.478][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:28.478][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.479][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.480][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:28.481][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:28.482][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.482][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.483][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:28.484][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:28.485][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.485][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.486][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:28.487][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:28.487][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.488][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.489][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:28.490][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:28.490][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.491][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.492][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:28.493][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:28.493][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.494][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.495][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.496][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.497][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.497][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.498][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:28.499][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:28.499][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.500][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.501][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:28.501][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:28.502][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.503][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.503][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:28.504][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:28.505][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.506][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.506][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:28.507][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:28.508][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.509][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.509][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.510][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.511][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.512][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.512][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:28.513][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:28.514][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.515][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.515][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:28.516][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:28.517][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.518][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.518][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:28.519][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:28.520][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.521][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.521][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:28.522][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:28.523][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.524][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.524][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:28.525][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:28.526][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.527][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.527][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:28.528][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:28.529][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:28.530][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:28.531][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.531][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.532][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:28.533][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:28.534][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.534][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.535][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.536][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.537][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.537][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.538][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:28.539][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:28.540][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.541][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.541][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:28.542][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:28.543][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.544][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.544][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:28.545][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:28.546][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.547][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.547][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:28.548][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:28.549][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.549][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.550][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.551][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.552][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.552][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.553][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:28.554][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:28.555][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.555][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.556][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:28.557][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:28.558][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.558][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.559][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:28.560][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:28.561][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.561][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.562][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:28.563][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:28.563][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.564][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.565][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:06:28.566][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:28.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:28.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:28.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:28.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.572][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:28.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:28.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.575][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:28.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:28.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.578][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:28.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:28.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.581][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:28.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:28.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.584][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.587][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.595][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.598][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:28.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:28.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.601][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:28.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:28.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.604][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:28.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:28.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.608][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:28.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:28.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.611][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:28.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:28.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.614][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:28.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:28.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.617][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:28.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:28.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.620][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:28.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:28.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.623][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:28.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:28.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.626][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:28.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:28.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.629][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:28.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:28.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.632][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:28.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:28.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.635][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.638][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.641][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.644][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:28.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:28.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.647][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:28.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:28.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.650][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:28.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:28.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.654][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:28.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:28.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.657][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:28.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:28.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.659][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:28.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:28.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.662][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:28.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:28.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.665][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:28.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:28.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.668][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:28.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:28.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.671][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:28.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:28.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.674][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:28.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:28.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.677][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:28.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:28.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.685][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2022-04-09 08:06:28.686][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:28.686][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:28.687][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:28.689][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:28.690][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:28.690][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:28.691][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:28.692][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:28.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:28.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:28.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:28.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.700][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:28.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:28.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.703][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:28.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:28.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.706][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.710][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.713][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:28.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:28.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.716][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:28.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:28.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.719][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:28.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:28.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.722][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:28.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:28.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.725][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:28.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:28.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.728][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:28.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:28.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.731][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:28.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:28.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.734][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:28.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:28.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.737][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.740][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.743][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:28.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:28.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.746][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:28.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:28.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.749][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:28.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:28.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.752][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:28.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:28.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.755][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:28.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:28.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.758][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:28.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:28.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.762][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:28.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:28.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.765][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:28.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:28.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.767][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:28.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:28.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.770][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:28.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:28.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.773][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:28.774][private$selectFields]
biodb.TRACE[2022-04-09 08:06:28.775][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:28.776][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:28.776][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:28.777][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:28.778][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:28.778][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.779][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.780][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:28.781][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:28.781][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.782][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.783][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.784][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.784][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.785][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.786][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:28.786][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:28.787][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.788][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.789][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:28.789][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:28.790][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.791][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.792][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:28.792][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:28.793][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.794][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.794][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:28.795][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:28.796][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.797][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.797][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.798][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.799][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.799][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.800][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:28.801][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:28.802][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.802][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.803][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:28.804][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:28.805][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.805][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.806][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:28.807][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:28.808][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.808][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.809][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:28.810][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:28.810][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.811][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.812][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:28.812][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:28.813][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.814][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.815][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:28.815][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:28.816][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.817][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.817][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:28.818][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:28.824][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.824][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.825][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.826][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.826][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.827][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.828][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:28.828][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:28.829][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.830][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.830][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:28.831][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:28.832][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.832][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.833][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:28.834][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:28.835][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.835][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.836][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:28.837][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:28.837][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.838][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.839][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.839][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.840][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.841][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.841][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:28.842][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:28.843][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.843][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.844][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:28.845][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:28.846][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.846][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.847][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:28.848][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:28.848][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.849][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.850][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:28.851][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:28.851][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.852][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.853][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:28.853][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:28.854][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.855][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.856][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:28.856][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:28.857][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:28.858][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:28.859][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.859][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.860][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:28.861][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:28.861][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.862][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.863][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.864][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.864][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.865][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.866][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:28.866][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:28.867][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.868][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.869][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:28.869][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:28.870][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.871][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.871][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:28.872][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:28.873][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.874][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.874][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:28.875][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:28.876][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.876][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.877][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.878][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.879][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.879][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.880][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:28.881][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:28.881][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.882][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.883][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:28.884][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:28.884][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.885][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.886][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:28.886][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:28.887][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.888][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.888][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:28.889][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:28.890][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.891][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.891][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:06:28.892][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:28.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:28.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.895][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:28.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:28.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.898][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:28.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:28.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.901][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:28.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:28.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.904][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:28.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:28.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.907][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:28.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:28.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.910][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.913][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.916][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.919][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:28.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:28.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.923][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:28.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:28.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.926][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:28.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:28.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.929][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:28.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:28.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.932][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:28.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:28.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.936][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:28.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:28.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.939][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:28.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:28.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.942][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:28.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:28.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.945][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:28.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:28.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.948][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:28.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:28.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.951][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:28.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:28.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.954][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:28.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:28.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.957][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.960][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.963][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.967][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:28.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:28.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.970][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:28.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:28.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.973][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:28.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:28.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.976][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:28.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:28.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.979][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:28.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:28.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.982][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:28.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:28.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.986][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:28.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:28.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.989][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:28.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:28.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.992][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:28.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:28.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.995][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:28.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:28.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.999][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:28.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:29.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.002][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:29.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:29.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.010][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [16587, 0, 16587, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)9-8-22(31)26(5,33)21-7-11-27(34)16-12-18(28)17-13-19(29)20(30)14-24(17,3)15(16)6-10-25(21,27)4/h12,15,17,19-22,29-34H,6-11,13-14H2,1-5H3/t15-,17-,19+,20-,21-,22+,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2022-04-09 08:06:29.011][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:29.011][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:29.012][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:29.014][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:29.014][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:29.015][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:29.016][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:29.017][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:29.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:29.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.020][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:29.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:29.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.023][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:29.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:29.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.026][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:29.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:29.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.030][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.033][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.036][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:29.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:29.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.039][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:29.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:29.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.042][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:29.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:29.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.045][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:29.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:29.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.049][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:29.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:29.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.057][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:29.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:29.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.059][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:29.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:29.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.062][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:29.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:29.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.066][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.069][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.072][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:29.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:29.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.075][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:29.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:29.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.078][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:29.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:29.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.081][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:29.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:29.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.084][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:29.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:29.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.087][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:29.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:29.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.090][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:29.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:29.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.093][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:29.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:29.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.096][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:29.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:29.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.099][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:29.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:29.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.102][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:29.103][private$selectFields]
biodb.TRACE[2022-04-09 08:06:29.104][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:29.104][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:29.105][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:29.106][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:29.107][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:29.107][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.108][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.109][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:29.110][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:29.110][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.111][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.112][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.113][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.113][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.114][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.115][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:29.116][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:29.116][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.117][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.118][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:29.118][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:29.119][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.120][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.121][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:29.121][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:29.122][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.123][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.124][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:29.124][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:29.125][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.126][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.127][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.127][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.128][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.129][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.130][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:29.130][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:29.131][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.132][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.133][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:29.133][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:29.134][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.135][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.135][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:29.136][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:29.137][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.138][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.138][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:29.139][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:29.140][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.141][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.142][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:29.142][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:29.143][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.144][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.145][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:29.145][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:29.146][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.147][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.147][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:29.148][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:29.149][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.150][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.150][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.151][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.152][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.153][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.153][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:29.154][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:29.155][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.156][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.156][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:29.157][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:29.158][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.159][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.160][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:29.160][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:29.161][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.162][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.162][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:29.163][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:29.164][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.165][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.166][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.166][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.167][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.168][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.169][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:29.169][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:29.170][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.171][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.172][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:29.172][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:29.173][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.174][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.175][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:29.175][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:29.176][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.177][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.178][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:29.178][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:29.179][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.180][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.181][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:29.181][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:29.182][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.183][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.184][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:06:29.185][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:06:29.186][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:29.186][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:29.187][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.188][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.189][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:29.189][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:29.190][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.191][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.191][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.192][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.193][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.194][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.194][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:29.195][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:29.196][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.196][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.197][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:29.198][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:29.199][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.199][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.200][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:29.201][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:29.202][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.202][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.203][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.204][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.205][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.206][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.206][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:29.207][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:29.208][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.209][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.209][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:29.210][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:29.211][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.212][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.212][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:29.213][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:29.214][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.215][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.215][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:29.216][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:29.217][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.218][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.218][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:06:29.219][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:29.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:29.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.222][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:29.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:29.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:29.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:29.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.228][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:29.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:29.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.231][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:29.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:29.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.234][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:29.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:29.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.237][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.240][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.243][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.246][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:29.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:29.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.249][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:29.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:29.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.252][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:29.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:29.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.256][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:29.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:29.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.259][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:29.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:29.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.262][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:29.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:29.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.265][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:29.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:29.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.268][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:29.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:29.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.271][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:29.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:29.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.274][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.277][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.285][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.288][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:29.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:29.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.291][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:29.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:29.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.293][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:29.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:29.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.296][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:29.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:29.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.299][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:29.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:29.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.302][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:29.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:29.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.305][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:29.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:29.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.308][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:29.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:29.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.311][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:29.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:29.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.314][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:29.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:29.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.317][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:29.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:29.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.319][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:29.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:29.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.326][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [19804, 0, 19804, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)8-5-9-26(33,15-28)22-7-11-27(34)17-12-19(29)18-13-20(30)21(31)14-24(18,3)16(17)6-10-25(22,27)4/h12,16,18,20-22,28,30-34H,5-11,13-15H2,1-4H3/t16-,18-,20+,21-,22-,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2022-04-09 08:06:29.327][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:29.328][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:29.330][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:29.331][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:29.331][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:29.333][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:29.333][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:29.334][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:29.335][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:29.418][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:29.421][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:29.422][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f077e512e38828ca0970d6a9a2df40b1".
biodb.TRACE[2022-04-09 08:06:29.423][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:29.424][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f077e512e38828ca0970d6a9a2df40b1.content".
biodb.DEBUG[2022-04-09 08:06:29.426][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:29.427][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:29.427][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:29.429][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:29.429][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:29.430][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:29.431][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:29.432][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.435][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.438][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:29.441][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:29.442][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:29.442][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:29.444][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:29.444][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:29.445][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:29.446][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:29.447][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.450][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.454][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:29.457][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:29.457][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:29.458][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:29.459][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:29.460][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:29.461][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:29.462][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:29.462][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.466][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.469][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:29.472][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:29.472][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:29.473][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:29.474][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:29.475][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:29.476][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:29.476][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:29.477][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.480][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.483][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:29.486][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:29.487][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:29.488][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:29.489][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:29.490][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:29.490][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:29.491][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:29.492][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.495][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.498][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:29.501][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:29.507][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:29.507][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:29.508][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:29.509][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:29.510][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:29.510][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:29.511][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.514][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.517][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:29.520][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:29.520][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:29.521][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:29.522][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:29.523][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:29.523][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:29.524][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:29.525][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.528][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.530][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:29.534][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:29.536][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:29.537][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1f74ce81a905644d346321032fe47e5f".
biodb.TRACE[2022-04-09 08:06:29.538][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:29.539][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1f74ce81a905644d346321032fe47e5f.content".
biodb.DEBUG[2022-04-09 08:06:29.541][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:29.541][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:29.542][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:29.543][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:29.544][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:29.544][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:29.545][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:29.546][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.549][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.552][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:29.554][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:29.555][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:29.556][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:29.557][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:29.558][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:29.558][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:29.559][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:29.560][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.563][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.565][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:29.569][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:29.571][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:29.572][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d7672f179ff5d0339b4462dafc99279b".
biodb.TRACE[2022-04-09 08:06:29.573][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:29.574][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d7672f179ff5d0339b4462dafc99279b.content".
biodb.DEBUG[2022-04-09 08:06:29.577][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:29.578][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:29.579][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:29.580][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:29.581][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:29.581][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:29.582][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:29.583][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.585][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.588][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:29.591][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:29.592][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:29.592][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:29.594][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:29.594][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:29.595][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:29.596][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:29.596][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.599][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.602][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:29.606][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:29.607][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:29.608][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:29.608][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:29.610][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:29.610][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:29.611][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:29.612][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:29.613][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:29.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:29.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.616][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:29.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:29.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.619][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:29.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:29.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.622][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:29.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:29.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.625][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.628][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.631][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:29.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:29.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.634][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:29.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:29.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.637][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:29.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:29.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.640][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:29.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:29.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.642][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:29.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:29.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.645][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:29.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:29.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.648][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:29.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:29.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.651][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:29.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:29.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.654][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.657][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.660][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:29.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:29.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.664][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:29.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:29.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.667][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:29.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:29.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.670][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:29.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:29.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.673][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:29.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:29.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.676][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:29.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:29.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.679][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:29.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:29.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.682][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:29.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:29.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.685][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:29.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:29.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.688][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:29.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:29.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.691][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:29.692][private$selectFields]
biodb.TRACE[2022-04-09 08:06:29.692][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:29.693][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:29.694][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:29.695][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:29.696][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:29.696][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.697][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.698][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:29.699][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:29.699][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.700][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.701][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.702][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.702][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.703][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.704][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:29.705][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:29.705][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.706][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.707][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:29.708][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:29.708][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.709][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.710][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:29.711][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:29.711][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.712][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.713][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:29.714][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:29.714][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.715][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.716][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.717][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.717][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.718][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.719][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:29.720][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:29.720][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.721][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.722][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:29.722][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:29.723][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.724][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.725][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:29.725][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:29.726][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.727][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.733][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:29.734][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:29.735][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.735][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.736][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:29.737][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:29.737][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.738][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.739][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:29.740][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:29.740][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.741][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.742][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:29.742][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:29.743][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.744][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.744][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.745][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.746][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.746][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.747][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:29.748][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:29.749][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.749][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.750][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:29.751][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:29.751][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.752][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.753][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:29.754][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:29.754][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.755][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.756][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:29.756][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:29.757][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.758][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.759][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.759][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.760][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.761][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.762][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:29.762][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:29.763][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.764][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.765][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:29.765][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:29.766][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.767][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.768][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:29.769][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:29.769][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.770][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.771][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:29.772][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:29.772][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.773][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.774][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:29.775][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:29.776][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.776][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.777][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:29.778][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:29.779][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:29.780][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:29.781][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.782][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.782][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:29.783][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:29.784][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.785][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.786][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.787][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.788][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.788][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.789][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:29.790][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:29.791][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.791][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.792][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:29.793][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:29.794][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.795][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.796][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:29.796][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:29.797][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.798][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.799][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:29.799][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:29.800][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.801][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.802][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.802][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.803][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.804][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.805][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:29.805][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:29.806][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.807][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.808][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:29.809][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:29.809][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.810][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.811][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:29.811][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:29.812][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.813][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.814][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:29.815][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:29.816][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.816][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.817][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:06:29.818][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:29.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:29.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.822][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:29.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:29.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.825][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:29.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:29.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.828][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:29.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:29.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.832][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:29.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:29.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.835][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:29.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:29.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.838][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.842][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.845][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.848][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:29.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:29.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.851][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:29.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:29.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.855][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:29.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:29.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.858][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:29.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:29.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.861][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:29.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:29.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.864][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:29.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:29.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.867][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:29.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:29.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.871][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:29.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:29.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.874][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:29.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:29.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.877][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:29.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:29.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.879][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:29.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:29.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.882][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:29.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:29.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.886][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.889][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.892][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.895][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:29.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:29.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.898][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:29.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:29.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.902][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:29.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:29.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.905][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:29.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:29.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.908][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:29.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:29.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.911][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:29.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:29.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.915][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:29.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:29.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.918][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:29.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:29.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.921][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:29.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:29.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.924][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:29.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:29.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.927][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:29.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:29.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.930][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:29.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:29.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.938][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [7799, 0, 7799, C16H31N2O8P, InChI=1S/C16H28N2O4.H3O4P/c1-5-12(6-2)22-14-9-11(16(20)21-7-3)8-13(17)15(14)18-10(4)19;1-5(2,3)4/h9,12-15H,5-8,17H2,1-4H3,(H,18,19);(H3,1,2,3,4)/t13-,14+,15+;/m0./s1, ...].
biodb.DEBUG[2022-04-09 08:06:29.939][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:29.940][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:29.941][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:29.942][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:29.943][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:29.943][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:29.944][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:29.945][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:29.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:29.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:29.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:29.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.951][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:29.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:29.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.954][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:29.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:29.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.957][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.960][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.963][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:29.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:29.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.971][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:29.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:29.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.974][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:29.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:29.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.977][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:29.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:29.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.980][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:29.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:29.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.983][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:29.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:29.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.986][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:29.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:29.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.989][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:29.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:29.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.992][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.995][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.998][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:29.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:29.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.001][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.004][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:30.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:30.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.007][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:30.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:30.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.010][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:30.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:30.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.012][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:30.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:30.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.015][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:30.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:30.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.018][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:30.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:30.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.021][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:30.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:30.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.024][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:30.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:30.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.027][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:30.028][private$selectFields]
biodb.TRACE[2022-04-09 08:06:30.028][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:30.029][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:30.030][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:30.030][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:30.031][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:30.032][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.032][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.033][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:30.034][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:30.035][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.035][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.036][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.037][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.037][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.038][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.039][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:30.040][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:30.040][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.041][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.042][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:30.043][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:30.043][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.044][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.045][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:30.045][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:30.046][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.047][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.048][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:30.048][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:30.049][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.050][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.051][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.051][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.052][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.053][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.053][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.054][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.055][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.056][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.056][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:30.057][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:30.058][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.059][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.059][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:30.060][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:30.061][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.062][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.062][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:30.063][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:30.064][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.065][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.065][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:30.066][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:30.067][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.068][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.068][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:30.069][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:30.070][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.071][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.071][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:30.072][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:30.073][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.074][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.074][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.075][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.076][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.077][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.078][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:30.078][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:30.079][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.080][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.081][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:30.082][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:30.082][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.083][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.084][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:30.085][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:30.085][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.086][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.087][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:30.088][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:30.088][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.089][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.090][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.091][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.091][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.092][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.093][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.094][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.094][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.095][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.096][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:30.097][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:30.097][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.098][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.099][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:30.100][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:30.100][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.101][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.102][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:30.102][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:30.103][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.104][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.105][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:30.105][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:30.106][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.107][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.107][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:06:30.108][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:06:30.109][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:30.110][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:30.111][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.111][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.112][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:30.113][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:30.114][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.115][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.115][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.116][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.117][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.118][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.119][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:30.119][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:30.120][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.121][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.122][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:30.123][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:30.123][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.124][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.125][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:30.126][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:30.127][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.127][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.128][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.129][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.130][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.130][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.131][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.132][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.133][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.134][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.134][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:30.135][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:30.136][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.137][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.138][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:30.138][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:30.139][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.140][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.141][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:30.142][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:30.142][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.143][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.144][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:06:30.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:30.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:30.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.148][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:30.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:30.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.151][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:30.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:30.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.154][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:30.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:30.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.158][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:30.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:30.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.161][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:30.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:30.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.164][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.167][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.170][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.178][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:30.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:30.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.181][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:30.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:30.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.184][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:30.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:30.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.188][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:30.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:30.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.191][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:30.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:30.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.194][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:30.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:30.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.197][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:30.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:30.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.206][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:30.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:30.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.209][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:30.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:30.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.212][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.215][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.218][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.221][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.224][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.227][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.231][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:30.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:30.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.234][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:30.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:30.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.237][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:30.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:30.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.240][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:30.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:30.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.243][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:30.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:30.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.247][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:30.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:30.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.250][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:30.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:30.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.253][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:30.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:30.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.256][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:30.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:30.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.263][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [71954, 0, 71954, C18H21F3N6O2, InChI=1S/C18H21F3N6O2/c19-18(20,21)13-9-15(22)23-11-12(13)14-10-16(26-1-5-28-6-2-26)25-17(24-14)27-3-7-29-8-4-27/h9-11H,1-8H2,(H2,22,23), ...].
biodb.DEBUG[2022-04-09 08:06:30.264][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:30.265][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:30.266][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:30.267][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:30.268][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:30.269][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:30.270][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:30.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:30.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.274][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:30.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:30.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.277][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:30.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:30.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.280][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:30.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:30.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.283][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.286][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.289][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:30.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:30.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.292][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:30.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:30.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.295][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:30.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:30.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.298][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:30.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:30.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.301][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:30.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:30.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.304][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:30.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:30.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.307][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:30.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:30.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.311][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:30.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:30.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.314][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.317][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.320][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.323][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.327][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:30.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:30.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.330][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:30.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:30.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.333][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:30.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:30.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.336][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:30.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:30.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.339][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:30.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:30.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.342][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:30.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:30.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.345][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:30.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:30.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.348][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:30.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:30.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.351][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:30.351][private$selectFields]
biodb.TRACE[2022-04-09 08:06:30.352][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:30.353][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:30.353][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:30.354][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:30.355][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:30.356][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.357][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.357][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:30.358][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:30.359][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.359][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.360][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.361][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.362][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.362][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.363][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:30.364][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:30.365][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.366][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.366][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:30.367][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:30.368][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.369][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.369][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:30.370][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:30.371][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.372][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.372][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:30.373][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:30.374][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.375][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.375][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.376][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.377][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.378][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.378][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.379][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.380][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.381][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.381][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:30.382][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:30.383][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.384][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.384][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:30.385][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:30.386][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.387][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.387][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:30.388][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:30.389][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.390][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.390][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:30.391][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:30.392][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.393][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.393][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:30.394][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:30.395][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.396][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.396][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:30.397][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:30.398][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.399][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.399][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.400][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.401][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.402][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.402][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:30.403][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:30.404][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.405][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.405][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:30.406][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:30.407][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.408][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.408][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:30.409][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:30.410][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.410][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.411][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:30.412][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:30.413][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.414][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.414][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.415][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.416][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.417][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.417][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.418][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.419][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.420][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.420][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:30.421][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:30.422][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.423][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.423][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:30.424][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:30.425][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.426][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.426][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:30.427][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:30.428][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.429][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.429][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:30.430][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:30.431][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.437][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.438][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:30.438][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:30.439][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:30.440][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:30.440][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.441][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.442][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:30.443][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:30.443][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.444][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.445][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.445][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.446][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.447][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.447][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:30.448][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:30.449][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.450][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.450][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:30.451][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:30.452][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.452][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.453][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:30.454][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:30.455][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.455][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.456][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:30.457][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:30.457][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.458][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.459][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.460][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.460][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.461][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.462][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.463][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.463][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.464][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.465][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:30.465][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:30.466][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.467][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.468][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:30.468][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:30.469][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.470][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.470][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:30.471][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:30.472][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.473][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.473][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:06:30.474][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:30.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:30.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.477][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:30.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:30.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.480][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:30.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:30.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.483][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:30.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:30.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.486][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:30.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:30.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.489][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:30.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:30.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.492][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.494][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.497][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.500][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:30.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:30.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.503][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:30.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:30.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.506][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:30.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:30.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.509][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:30.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:30.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.512][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:30.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:30.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.514][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:30.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:30.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.517][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:30.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:30.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.520][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:30.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:30.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.523][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:30.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:30.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.526][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:30.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:30.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.529][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:30.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:30.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.532][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:30.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:30.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.535][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.538][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.541][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.544][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.547][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.550][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.553][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:30.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:30.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.556][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:30.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:30.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.559][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:30.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:30.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.562][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:30.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:30.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.565][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:30.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:30.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.567][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:30.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:30.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.570][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:30.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:30.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.573][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:30.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:30.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.576][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:30.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:30.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.584][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [3017, 0, 3017, C16H18N4O7S, InChI=1S/C16H18N4O7S/c1-25-12-8-13(26-2)18-15(17-12)19-16(22)20-28(23,24)9-10-6-4-5-7-11(10)14(21)27-3/h4-8H,9H2,1-3H3,(H2,17,18,19,20,22), ...].
biodb.DEBUG[2022-04-09 08:06:30.584][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:30.585][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-04-09 08:06:30.589][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.592][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.595][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.598][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.601][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.604][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.607][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.610][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.613][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.616][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.619][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.622][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:30.627][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:30.628][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:30.629][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:30.630][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:30.631][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:30.631][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.632][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:30.719][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:30.721][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:30.722][cch$loadFileContent] Trying to load 1 files from cache: [1]: "c60f2116f91d4ce61370ae6298305b49".
biodb.TRACE[2022-04-09 08:06:30.723][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:30.724][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c60f2116f91d4ce61370ae6298305b49.content".
biodb.DEBUG[2022-04-09 08:06:30.727][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:30.729][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:30.730][cch$loadFileContent] Trying to load 1 files from cache: [1]: "921bb2fccd1f3497458cb7cf8fd2ffda".
biodb.TRACE[2022-04-09 08:06:30.730][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:30.731][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/921bb2fccd1f3497458cb7cf8fd2ffda.content".
biodb.DEBUG[2022-04-09 08:06:30.733][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:30.734][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:30.735][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:30.736][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:30.737][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:30.737][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.738][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:30.739][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.742][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.745][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:30.748][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:30.749][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:30.749][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:30.751][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:30.751][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:30.752][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.753][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:30.754][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.757][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.760][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:30.763][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:30.763][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:30.764][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:30.765][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:30.766][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:30.766][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.767][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:30.768][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.771][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.774][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:30.777][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:30.778][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:30.779][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:30.779][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:30.781][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:30.781][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:30.782][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.783][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:30.784][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:30.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:30.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:30.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:30.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.789][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:30.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:30.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.792][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:30.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:30.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.795][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.798][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.801][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:30.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:30.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.804][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:30.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:30.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.807][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:30.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:30.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.810][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:30.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:30.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.813][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:30.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:30.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.816][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:30.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:30.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.819][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:30.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:30.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.822][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:30.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:30.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.825][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.828][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.831][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.834][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.837][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:30.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:30.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.840][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:30.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:30.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.843][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:30.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:30.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.846][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:30.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:30.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.849][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:30.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:30.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.852][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:30.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:30.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.854][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:30.855][private$selectFields]
biodb.TRACE[2022-04-09 08:06:30.856][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:30.857][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:30.857][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:30.858][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:30.859][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:30.860][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.860][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.861][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:30.862][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:30.863][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.863][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.864][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.865][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.866][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.866][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.867][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:30.868][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:30.868][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.869][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.870][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:30.871][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:30.871][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.872][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.873][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:30.879][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:30.879][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.880][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.881][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:30.881][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:30.882][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.883][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.883][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.884][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.885][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.886][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.886][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.887][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.888][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.888][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.889][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:30.890][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:30.890][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.891][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.892][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:30.892][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:30.893][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.894][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.894][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:30.895][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:30.896][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.897][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.897][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:30.898][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:30.899][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.899][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.900][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:30.901][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:30.902][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.902][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.903][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.904][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.904][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.905][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.906][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:30.907][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:30.907][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.908][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.909][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:30.909][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:30.910][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.911][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.911][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:30.912][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:30.913][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.914][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.914][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:30.915][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:30.916][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.916][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.917][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.918][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.918][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.919][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.920][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.920][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.921][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.922][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.922][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:30.923][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:30.924][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.925][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.925][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:30.926][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:30.927][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.927][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.928][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:30.929][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:30.930][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.930][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.931][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:30.932][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:30.933][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:30.934][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:30.935][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.936][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.936][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:30.937][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:30.938][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.938][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.939][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.940][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.941][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.941][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.942][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:30.943][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:30.944][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.944][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.945][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:30.946][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:30.946][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.947][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.948][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:30.949][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:30.949][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.950][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.951][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:30.952][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:30.952][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.953][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.954][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.954][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.955][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.956][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.957][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.957][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.958][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.959][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.960][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:30.960][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:30.961][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.962][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.963][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:30.963][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:30.964][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.965][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.966][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:30.966][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:30.967][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.968][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.969][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:06:30.970][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:30.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:30.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.973][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:30.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:30.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:30.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:30.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.979][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:30.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:30.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.982][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:30.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:30.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.985][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:30.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:30.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.988][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.991][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.994][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.997][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:30.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:30.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.000][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:31.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:31.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.003][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:31.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:31.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.006][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:31.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:31.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.009][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:31.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:31.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.011][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:31.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:31.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.014][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:31.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:31.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.018][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:31.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:31.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.022][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:31.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:31.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.026][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:31.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:31.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.029][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:31.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:31.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.033][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:31.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:31.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.036][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:31.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:31.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.039][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:31.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:31.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.043][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:31.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:31.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.046][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.049][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.052][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.056][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:31.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:31.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.059][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:31.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:31.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.062][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:31.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:31.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.065][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:31.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:31.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.068][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:31.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:31.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.071][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:31.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:31.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.075][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:31.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:31.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.078][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:31.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:31.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.081][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:31.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:31.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.089][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4648, 0, 4648, C30H50, InChI=1S/C30H50/c1-20(2)21-12-17-27(5)22(21)13-18-29(7)24(27)10-11-25-28(6)16-9-15-26(3,4)23(28)14-19-30(25,29)8/h21-25H,1,9-19H2,2-8H3/t21-,22+,23+,24-,25-,27+,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2022-04-09 08:06:31.090][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:31.090][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:31.091][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:31.092][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:31.093][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:31.094][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:31.095][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:31.095][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.099][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.102][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:31.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:31.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.114][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:31.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:31.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.117][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.120][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.123][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:31.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:31.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.125][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:31.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:31.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.128][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:31.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:31.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.131][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:31.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:31.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.134][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:31.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:31.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.137][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:31.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:31.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.140][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:31.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:31.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.142][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:31.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:31.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.145][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:31.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:31.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.148][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:31.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:31.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.151][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.154][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.157][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:31.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:31.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.159][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:31.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:31.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.162][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:31.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:31.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.165][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:31.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:31.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.168][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:31.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:31.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.171][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:31.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:31.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.173][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:31.174][private$selectFields]
biodb.TRACE[2022-04-09 08:06:31.175][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:31.175][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:31.176][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:31.177][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.178][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.178][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.179][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.180][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:31.180][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:31.181][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.182][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.182][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.183][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.184][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.185][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.185][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:31.186][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:31.187][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.187][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.188][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:31.189][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:31.190][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.190][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.191][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:31.192][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:31.192][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.193][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.194][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:31.194][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:31.195][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.196][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.197][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:31.197][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:31.198][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.199][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.199][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.200][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.201][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.202][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.202][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:31.203][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:31.204][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.204][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.205][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:31.206][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:31.207][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.207][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.208][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:31.209][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:31.210][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.210][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.211][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.212][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.213][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.213][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.214][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:31.215][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:31.215][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.216][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.217][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.218][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.218][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.219][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.220][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:31.221][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:31.221][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.222][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.223][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:31.224][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:31.224][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.225][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.226][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:31.226][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:31.227][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.228][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.229][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:31.229][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:31.230][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.231][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.231][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:31.232][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:31.233][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.234][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.234][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.235][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.236][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.237][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.237][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:31.238][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:31.239][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.239][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.240][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:31.241][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:31.241][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.242][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.243][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:31.243][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:31.244][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.245][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.245][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:31.246][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:31.247][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.248][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.248][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.249][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.250][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:31.251][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:31.251][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.252][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.253][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.253][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.254][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.255][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.256][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:31.256][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:31.257][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.258][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.259][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:31.259][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:31.260][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.261][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.261][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:31.262][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:31.263][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.264][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.264][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:31.265][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:31.266][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.267][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.267][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:31.268][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:31.269][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.270][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.270][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.271][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.272][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.272][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.273][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:31.274][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:31.275][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.275][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.276][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:31.277][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:31.278][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.278][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.279][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:31.280][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:31.281][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.281][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.282][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:06:31.283][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.289][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.292][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:31.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:31.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.295][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:31.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:31.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.298][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:31.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:31.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.301][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.304][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.307][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.310][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:31.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:31.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.313][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:31.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:31.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.316][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:31.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:31.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.319][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:31.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:31.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.322][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:31.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:31.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.325][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:31.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:31.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.333][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:31.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:31.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.336][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:31.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:31.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.339][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:31.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:31.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.342][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:31.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:31.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.345][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:31.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:31.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.348][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:31.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:31.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.351][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:31.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:31.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.353][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:31.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:31.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.356][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:31.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:31.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.359][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.362][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.365][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.368][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:31.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:31.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.371][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:31.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:31.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.374][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:31.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:31.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.377][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:31.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:31.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.379][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:31.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:31.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.382][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:31.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:31.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.385][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:31.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:31.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.388][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:31.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:31.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.391][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:31.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:31.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.398][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2022-04-09 08:06:31.399][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:31.399][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:31.400][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:31.401][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:31.402][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:31.403][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:31.403][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:31.404][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.410][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:31.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:31.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.413][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:31.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:31.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.416][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.419][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.421][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:31.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:31.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.424][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:31.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:31.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.427][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:31.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:31.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.430][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:31.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:31.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.433][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:31.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:31.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.436][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:31.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:31.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.439][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:31.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:31.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.442][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:31.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:31.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.445][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:31.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:31.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.448][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:31.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:31.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.451][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.454][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.457][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:31.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:31.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.460][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:31.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:31.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.462][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:31.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:31.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.465][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:31.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:31.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.468][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:31.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:31.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.471][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:31.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:31.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.474][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:31.475][private$selectFields]
biodb.TRACE[2022-04-09 08:06:31.475][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:31.476][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:31.477][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:31.477][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.478][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.479][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.480][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.480][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:31.481][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:31.482][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.483][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.483][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.484][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.485][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.486][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.486][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:31.487][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:31.488][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.489][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.489][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:31.490][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:31.491][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.491][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.492][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:31.493][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:31.494][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.494][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.495][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:31.496][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:31.497][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.497][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.498][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:31.499][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:31.500][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.500][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.501][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.502][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.503][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.503][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.504][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:31.505][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:31.506][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.506][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.507][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:31.508][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:31.509][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.509][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.510][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:31.511][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:31.511][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.512][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.513][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.514][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.514][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.515][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.516][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:31.517][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:31.517][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.518][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.519][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.520][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.520][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.521][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.522][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:31.523][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:31.523][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.524][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.525][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:31.526][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:31.526][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.527][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.528][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:31.528][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:31.529][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.530][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.531][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:31.531][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:31.532][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.533][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.534][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:31.534][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:31.535][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.536][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.536][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.537][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.538][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.539][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.539][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:31.540][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:31.541][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.542][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.542][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:31.543][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:31.544][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.544][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.545][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:31.546][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:31.547][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.547][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.548][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:06:31.554][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:06:31.555][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.556][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.557][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.558][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.558][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:31.559][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:31.560][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.560][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.561][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.562][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.563][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.563][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.564][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:31.565][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:31.565][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.566][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.567][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:31.567][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:31.568][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.569][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.570][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:31.570][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:31.571][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.572][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.572][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:31.573][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:31.574][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.574][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.575][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.576][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.577][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.577][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.578][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:31.579][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:31.579][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.580][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.581][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:31.582][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:31.582][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.583][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.584][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:31.584][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:31.585][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.586][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.586][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:06:31.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.590][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.593][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.596][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:31.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:31.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.599][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:31.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:31.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.602][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:31.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:31.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.605][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.607][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.610][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.613][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:31.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:31.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.616][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:31.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:31.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.619][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:31.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:31.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.622][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:31.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:31.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.624][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:31.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:31.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.627][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:31.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:31.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.630][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:31.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:31.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.633][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:31.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:31.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.636][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:31.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:31.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.639][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:31.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:31.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.642][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:31.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:31.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.645][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:31.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:31.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.648][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.651][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.654][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.657][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:31.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:31.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.660][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:31.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:31.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.663][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:31.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:31.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.666][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:31.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:31.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.669][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:31.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:31.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.672][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:31.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:31.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.675][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:31.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:31.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.678][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:31.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:31.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.681][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:31.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:31.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.688][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [62447, 0, 62447, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-29(7)24(23)13-14-26-28(6)18-10-17-27(4,5)25(28)16-20-30(26,29)8/h11,23-26H,3,9-10,12-20H2,1-2,4-8H3/t23-,24-,25+,26-,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2022-04-09 08:06:31.688][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:31.689][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:31.692][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:31.692][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:31.693][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:31.694][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:31.695][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:31.696][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:31.697][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:31.789][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:31.791][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:31.792][cch$loadFileContent] Trying to load 1 files from cache: [1]: "839357b56387b64c91d43055dd5c5193".
biodb.TRACE[2022-04-09 08:06:31.793][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:31.794][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/839357b56387b64c91d43055dd5c5193.content".
biodb.DEBUG[2022-04-09 08:06:31.796][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:31.797][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:31.797][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:31.799][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:31.799][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:31.800][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:31.801][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:31.801][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.804][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.807][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:31.810][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:31.811][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:31.812][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:31.813][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:31.814][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:31.814][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:31.815][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:31.816][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.819][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.822][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:31.825][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:31.825][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:31.826][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:31.827][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:31.828][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:31.829][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:31.829][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:31.830][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.833][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.836][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:31.839][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:31.840][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:31.841][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:31.841][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:31.842][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:31.843][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:31.844][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:31.844][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:31.845][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.848][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.851][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:31.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:31.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.854][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:31.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:31.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.857][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.860][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.863][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:31.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:31.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.866][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:31.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:31.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.869][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:31.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:31.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.872][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:31.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:31.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.875][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:31.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:31.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.878][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:31.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:31.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.881][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:31.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:31.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.884][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:31.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:31.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.887][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:31.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:31.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.890][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:31.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:31.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.893][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.896][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.899][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:31.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:31.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.902][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:31.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:31.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.905][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:31.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:31.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.908][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:31.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:31.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.911][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:31.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:31.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.913][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:31.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:31.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.916][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:31.917][private$selectFields]
biodb.TRACE[2022-04-09 08:06:31.917][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:31.918][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:31.919][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:31.920][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.920][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.921][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.922][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.923][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:31.923][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:31.924][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.925][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.926][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.926][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.927][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.928][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.928][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:31.929][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:31.930][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.931][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.931][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:31.932][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:31.933][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.934][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.934][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:31.935][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:31.936][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.937][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.937][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:31.938][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:31.939][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.940][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.940][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:31.941][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:31.942][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.942][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.943][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.944][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.945][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.945][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.946][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:31.947][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:31.948][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.948][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.949][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:31.950][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:31.951][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.951][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.952][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:31.953][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:31.954][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.954][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.955][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.956][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.957][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.957][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.958][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:31.959][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:31.960][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.960][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.961][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.962][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.962][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.963][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.964][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:31.965][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:31.965][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.966][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.967][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:31.968][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:31.968][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.969][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.970][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:31.971][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:31.971][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.972][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.973][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:31.974][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:31.974][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.975][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.976][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:31.976][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:31.977][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.978][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.979][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.979][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.980][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.981][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.982][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:31.982][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:31.983][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.984][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.985][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:31.985][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:31.986][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.987][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.988][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:31.988][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:31.989][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.990][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.990][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:31.991][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:31.992][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.993][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.993][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.994][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.995][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:32.001][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:32.002][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.003][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.004][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.004][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.005][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.006][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.006][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:32.007][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:32.008][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.008][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.009][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:32.010][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:32.010][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.011][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.012][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:32.013][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:32.013][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.014][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.015][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:32.015][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:32.016][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.017][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.017][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:32.018][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:32.019][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.019][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.020][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.021][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.022][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.022][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.023][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:32.024][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:32.025][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.025][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.026][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:32.027][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:32.027][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.028][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.029][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:32.030][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:32.030][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.031][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.032][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:06:32.033][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:32.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:32.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.035][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:32.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:32.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.038][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:32.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:32.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.041][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:32.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:32.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.044][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:32.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:32.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.047][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:32.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:32.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.050][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.053][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.056][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.059][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:32.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:32.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.061][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:32.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:32.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.064][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:32.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:32.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.067][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:32.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:32.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.070][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:32.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:32.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.073][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:32.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:32.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.076][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:32.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:32.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.079][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:32.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:32.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.082][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:32.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:32.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.085][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:32.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:32.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.088][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:32.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:32.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.091][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:32.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:32.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.094][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:32.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:32.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.097][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:32.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:32.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.100][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:32.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:32.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.104][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.107][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.111][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.115][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:32.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:32.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.118][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:32.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:32.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.122][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:32.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:32.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.125][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:32.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:32.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.128][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:32.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:32.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.131][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:32.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:32.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.135][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:32.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:32.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.137][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:32.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:32.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.140][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:32.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:32.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.149][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2022-04-09 08:06:32.150][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:32.150][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:32.151][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:32.153][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:32.154][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:32.154][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:32.155][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:32.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:32.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:32.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:32.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:32.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.162][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:32.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:32.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.166][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:32.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:32.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.169][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.172][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.175][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:32.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:32.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.178][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:32.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:32.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.181][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:32.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:32.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.185][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:32.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:32.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.188][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:32.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:32.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.191][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:32.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:32.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.194][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:32.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:32.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.197][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:32.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:32.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.200][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:32.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:32.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.203][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:32.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:32.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.207][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.210][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.213][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:32.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:32.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.216][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:32.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:32.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.219][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:32.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:32.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.222][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:32.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:32.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.226][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:32.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:32.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.234][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:32.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:32.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.238][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:32.238][private$selectFields]
biodb.TRACE[2022-04-09 08:06:32.239][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:32.240][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:32.241][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:32.241][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:32.242][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:32.243][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.244][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.244][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:32.245][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:32.246][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.247][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.247][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.248][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.249][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.250][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.250][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:32.251][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:32.252][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.252][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.253][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:32.254][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:32.255][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.255][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.256][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:32.257][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:32.257][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.258][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.259][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:32.260][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:32.260][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.261][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.262][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:32.262][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:32.263][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.264][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.265][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.265][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.266][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.267][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.268][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:32.268][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:32.269][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.270][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.270][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:32.271][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:32.272][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.273][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.273][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:32.274][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:32.275][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.275][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.276][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:32.277][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:32.278][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.278][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.279][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:32.280][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:32.280][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.281][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.282][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.283][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.283][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.284][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.285][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:32.285][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:32.286][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.287][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.288][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:32.288][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:32.289][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.290][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.290][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:32.291][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:32.292][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.292][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.293][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:32.294][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:32.295][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.295][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.296][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:32.297][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:32.297][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.298][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.299][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.300][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.300][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.301][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.302][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:32.302][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:32.303][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.304][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.305][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:32.305][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:32.306][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.307][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.307][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:32.308][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:32.309][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.310][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.310][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:06:32.311][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:06:32.312][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:32.313][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:32.313][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.314][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.315][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:32.316][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:32.316][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.317][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.318][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.319][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.319][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.320][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.321][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:32.322][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:32.322][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.323][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.324][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:32.325][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:32.325][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.326][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.327][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:32.327][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:32.328][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.329][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.330][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:32.330][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:32.331][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.332][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.333][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.333][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.334][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.335][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.336][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:32.337][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:32.337][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.338][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.339][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:32.340][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:32.340][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.341][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.342][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:32.343][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:32.343][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.344][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.345][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:06:32.346][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:32.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:32.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.349][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:32.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:32.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.352][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:32.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:32.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.355][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:32.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:32.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.358][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:32.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:32.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.361][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:32.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:32.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.364][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.367][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.370][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.372][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:32.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:32.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.375][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:32.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:32.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.378][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:32.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:32.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.381][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:32.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:32.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.385][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:32.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:32.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.388][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:32.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:32.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.391][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:32.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:32.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.394][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:32.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:32.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.397][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:32.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:32.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.400][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:32.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:32.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.403][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:32.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:32.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.406][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:32.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:32.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.409][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.413][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.416][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.419][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:32.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:32.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.422][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:32.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:32.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.425][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:32.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:32.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.428][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:32.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:32.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.431][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:32.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:32.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.434][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:32.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:32.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.437][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:32.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:32.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.440][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:32.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:32.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.444][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:32.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:32.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.451][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [91601, 0, 91601, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24?,25?/m0/s1, ...].
biodb.DEBUG[2022-04-09 08:06:32.452][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:32.453][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:32.454][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:32.455][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:32.456][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:32.462][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:32.463][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:32.464][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:32.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:32.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.467][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:32.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:32.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.470][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:32.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:32.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.473][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:32.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:32.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.476][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.479][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.482][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:32.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:32.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.485][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:32.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:32.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.489][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:32.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:32.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.492][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:32.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:32.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.495][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:32.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:32.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.498][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:32.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:32.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.501][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:32.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:32.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.504][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:32.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:32.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.507][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:32.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:32.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.510][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:32.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:32.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.517][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.520][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.523][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:32.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:32.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.526][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:32.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:32.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.530][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:32.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:32.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.533][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:32.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:32.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.536][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:32.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:32.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.539][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:32.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:32.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.542][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:32.543][private$selectFields]
biodb.TRACE[2022-04-09 08:06:32.543][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:32.544][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:32.545][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:32.546][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:32.546][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:32.547][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.548][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.549][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:32.550][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:32.550][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.551][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.552][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.553][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.553][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.554][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.555][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:32.556][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:32.557][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.557][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.558][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:32.559][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:32.560][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.560][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.561][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:32.562][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:32.563][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.564][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.564][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:32.565][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:32.566][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.567][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.567][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:32.568][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:32.569][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.570][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.571][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.572][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.572][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.573][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.574][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:32.575][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:32.576][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.577][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.577][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:32.578][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:32.579][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.580][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.581][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:32.582][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:32.582][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.583][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.584][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:32.585][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:32.586][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.586][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.587][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:32.588][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:32.589][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.590][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.590][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.591][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.592][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.593][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.594][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:32.594][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:32.595][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.596][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.597][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:32.598][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:32.598][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.599][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.600][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:32.601][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:32.602][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.602][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.603][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:32.604][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:32.605][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.605][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.606][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:32.607][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:32.608][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.608][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.609][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.610][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.610][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.611][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.612][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:32.613][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:32.613][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.614][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.615][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:32.616][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:32.617][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.617][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.618][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:32.619][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:32.620][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.620][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.621][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:06:32.622][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:06:32.623][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:32.624][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:32.624][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.625][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.626][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:32.627][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:32.627][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.628][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.629][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.630][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.631][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.631][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.632][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:32.633][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:32.634][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.635][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.635][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:32.636][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:32.637][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.638][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.638][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:32.639][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:32.640][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.641][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.642][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:32.642][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:32.643][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.644][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.645][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.646][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.646][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.647][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.648][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:32.649][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:32.649][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.650][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.651][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:32.652][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:32.653][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.653][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.654][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:32.655][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:32.656][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.656][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.657][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:06:32.658][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:32.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:32.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.661][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:32.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:32.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.665][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:32.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:32.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.668][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:32.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:32.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.671][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:32.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:32.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.674][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:32.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:32.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.677][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.680][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.683][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.687][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:32.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:32.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.690][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:32.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:32.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.693][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:32.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:32.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.696][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:32.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:32.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.704][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:32.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:32.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.708][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:32.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:32.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.710][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:32.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:32.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.713][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:32.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:32.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.716][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:32.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:32.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.719][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:32.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:32.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.722][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:32.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:32.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.725][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:32.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:32.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.727][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.730][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.733][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.736][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:32.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:32.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.739][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:32.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:32.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.742][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:32.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:32.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.745][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:32.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:32.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.748][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:32.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:32.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.750][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:32.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:32.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.753][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:32.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:32.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.756][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:32.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:32.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.759][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:32.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:32.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.766][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [95147, 0, 95147, C29H40N2O4, InChI=1S/C29H40N2O4/c1-3-18-16(2)14-22-20(18)10-11-21-19-6-4-8-26(33)30-13-5-7-24-28(34)27(29(35)31-24)25(32)12-9-17(19)15-23(21)22/h4,8,10-11,16-24,27H,3,5-7,9,12-15H2,1-2H3,(H,30,33)(H,31,35)/t16-,17-,18-,19+,20+,21-,22+,23+,24+,27?/m1/s1, ...].
biodb.DEBUG[2022-04-09 08:06:32.767][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:32.767][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:32.770][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:32.770][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:32.771][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:32.772][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:32.773][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:32.774][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:32.774][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:32.856][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:32.859][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:32.860][cch$loadFileContent] Trying to load 1 files from cache: [1]: "432bde1fb4bc526aec38c781f579d7cb".
biodb.TRACE[2022-04-09 08:06:32.861][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:32.862][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/432bde1fb4bc526aec38c781f579d7cb.content".
biodb.DEBUG[2022-04-09 08:06:32.864][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:32.865][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:32.865][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:32.867][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:32.867][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:32.868][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:32.869][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:32.870][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.873][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.876][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:32.879][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:32.879][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:32.880][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:32.881][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:32.882][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:32.883][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:32.883][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:32.884][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.887][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.890][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:32.893][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:32.894][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:32.895][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:32.896][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:32.897][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:32.897][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:32.898][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:32.899][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.902][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.905][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:32.908][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:32.909][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:32.910][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:32.910][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:32.911][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:32.912][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:32.913][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:32.913][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:32.914][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:32.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:32.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.923][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:32.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:32.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.926][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:32.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:32.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.928][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:32.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:32.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.931][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.934][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.937][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:32.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:32.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.939][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:32.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:32.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.942][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:32.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:32.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.945][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:32.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:32.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.948][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:32.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:32.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.951][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:32.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:32.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.953][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:32.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:32.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.956][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:32.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:32.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.959][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:32.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:32.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.962][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:32.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:32.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.965][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.967][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.970][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:32.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:32.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.973][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:32.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:32.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.976][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:32.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:32.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.978][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:32.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:32.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.981][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:32.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:32.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.984][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:32.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:32.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.987][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:32.987][private$selectFields]
biodb.TRACE[2022-04-09 08:06:32.988][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:32.988][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:32.989][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:32.990][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:32.991][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:32.991][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.992][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.993][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:32.993][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:32.994][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.995][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.995][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.996][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.997][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.997][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.998][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:32.999][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:33.000][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.000][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.001][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:33.002][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:33.002][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.003][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.004][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:33.004][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:33.005][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.006][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.007][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:33.007][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:33.008][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.009][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.009][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:33.010][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:33.011][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.011][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.012][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.013][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.014][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.014][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.015][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:33.016][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:33.016][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.017][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.018][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:33.019][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:33.019][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.020][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.021][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:33.022][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:33.022][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.023][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.024][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:33.025][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:33.026][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.026][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.027][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:33.028][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:33.029][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.029][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.030][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.031][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.032][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.032][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.033][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:33.034][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:33.035][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.035][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.036][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:33.037][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:33.037][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.038][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.039][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:33.040][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:33.040][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.041][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.042][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:33.043][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:33.043][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.044][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.045][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:33.046][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:33.046][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.047][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.048][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.048][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.049][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.050][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.050][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:33.051][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:33.052][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.052][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.053][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:33.054][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:33.054][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.055][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.056][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:33.057][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:33.057][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.058][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.059][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:33.060][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:33.060][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:33.061][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:33.062][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.062][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.063][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:33.064][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:33.065][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.065][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.066][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.067][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.068][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.068][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.069][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:33.070][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:33.071][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.071][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.072][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:33.073][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:33.074][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.074][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.075][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:33.076][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:33.077][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.077][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.078][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:33.079][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:33.079][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.080][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.081][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:33.082][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:33.082][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.083][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.084][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.085][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.085][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.086][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.087][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:33.088][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:33.088][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.089][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.090][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:33.091][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:33.091][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.092][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.093][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:33.093][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:33.094][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.095][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.096][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:06:33.096][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:33.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:33.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.099][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:33.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:33.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.102][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:33.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:33.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.105][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:33.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:33.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.108][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:33.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:33.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.111][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:33.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:33.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.114][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.117][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.120][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.123][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:33.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:33.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.126][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:33.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:33.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.129][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:33.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:33.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.132][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:33.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:33.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.141][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:33.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:33.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.144][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:33.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:33.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.147][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:33.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:33.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.150][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:33.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:33.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.152][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:33.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:33.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.155][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:33.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:33.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.158][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:33.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:33.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.161][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:33.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:33.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.164][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:33.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:33.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.167][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:33.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:33.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.170][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:33.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:33.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.173][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.176][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.179][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.182][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:33.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:33.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.184][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:33.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:33.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.187][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:33.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:33.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.190][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:33.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:33.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.193][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:33.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:33.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.196][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:33.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:33.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.199][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:33.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:33.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.202][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:33.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:33.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.205][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:33.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:33.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.211][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [636, 0, 636, C24H26O6, InChI=1S/C24H26O6/c1-12(2)6-7-14-19-17(11-16(26)22(14)28-5)29-18-10-15(25)13-8-9-24(3,4)30-23(13)20(18)21(19)27/h6,10-11,25-26H,7-9H2,1-5H3, ...].
biodb.DEBUG[2022-04-09 08:06:33.212][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:33.213][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:33.214][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:33.215][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:33.216][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:33.216][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:33.217][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:33.218][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:33.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:33.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.221][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:33.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:33.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.224][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:33.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:33.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.227][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:33.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:33.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.230][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.233][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.236][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:33.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:33.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.239][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:33.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:33.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.242][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:33.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:33.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.245][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:33.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:33.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.248][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:33.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:33.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.251][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:33.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:33.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.254][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:33.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:33.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.257][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:33.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:33.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.260][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:33.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:33.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.262][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:33.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:33.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.265][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.268][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.271][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:33.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:33.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.274][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:33.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:33.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.277][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:33.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:33.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.281][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:33.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:33.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.284][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:33.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:33.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.287][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:33.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:33.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.290][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:33.291][private$selectFields]
biodb.TRACE[2022-04-09 08:06:33.291][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:33.292][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:33.293][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:33.294][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:33.294][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:33.295][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.296][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.297][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:33.298][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:33.298][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.299][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.300][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.301][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.301][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.302][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.303][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:33.304][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:33.304][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.305][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.306][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:33.307][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:33.307][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.308][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.309][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:33.310][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:33.310][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.311][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.312][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:33.313][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:33.313][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.314][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.315][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:33.316][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:33.316][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.317][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.318][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.318][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.319][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.320][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.321][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:33.322][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:33.322][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.323][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.324][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:33.325][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:33.326][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.326][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.327][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:33.328][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:33.329][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.330][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.330][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:33.331][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:33.332][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.333][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.333][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:33.334][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:33.335][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.336][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.337][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.337][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.338][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.339][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.340][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:33.340][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:33.341][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.342][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.343][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:33.343][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:33.344][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.345][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.346][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:33.347][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:33.347][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.348][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.349][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:33.350][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:33.350][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.351][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.352][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:33.353][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:33.353][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.354][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.355][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.355][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.356][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.357][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.358][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:33.358][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:33.359][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.365][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.366][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:33.367][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:33.368][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.369][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.370][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:33.371][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:33.372][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.373][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.374][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:06:33.375][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:06:33.376][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:33.377][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:33.378][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.379][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.380][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:33.380][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:33.381][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.382][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.383][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.383][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.384][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.385][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.386][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:33.387][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:33.387][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.388][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.389][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:33.390][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:33.390][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.391][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.392][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:33.393][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:33.394][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.394][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.395][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:33.396][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:33.397][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.397][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.398][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.399][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.400][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.401][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.401][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:33.402][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:33.403][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.404][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.404][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:33.405][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:33.406][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.407][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.407][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:33.408][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:33.409][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.410][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.411][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:06:33.411][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:33.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:33.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.414][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:33.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:33.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.418][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:33.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:33.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.421][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:33.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:33.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.424][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:33.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:33.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.427][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:33.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:33.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.430][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.433][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.436][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.439][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:33.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:33.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.442][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:33.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:33.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.445][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:33.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:33.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.448][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:33.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:33.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.451][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:33.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:33.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.454][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:33.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:33.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.458][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:33.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:33.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.461][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:33.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:33.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.464][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:33.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:33.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.467][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:33.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:33.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.470][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:33.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:33.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.473][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:33.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:33.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.477][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.480][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.483][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.486][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:33.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:33.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.489][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:33.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:33.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.492][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:33.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:33.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.495][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:33.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:33.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.498][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:33.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:33.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.502][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:33.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:33.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.505][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:33.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:33.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.507][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:33.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:33.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.510][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:33.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:33.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.517][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [64199, 0, 64199, C24H27ClN2O2, InChI=1S/C24H26N2O2.ClH/c27-24(28)20-9-10-23-22(16-20)21(17-25-23)8-4-5-13-26-14-11-19(12-15-26)18-6-2-1-3-7-18;/h1-3,6-7,9-11,16-17,25H,4-5,8,12-15H2,(H,27,28);1H, ...].
biodb.DEBUG[2022-04-09 08:06:33.518][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:33.519][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:33.520][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:33.521][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:33.522][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:33.522][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:33.523][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:33.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:33.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:33.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.527][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:33.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:33.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.530][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:33.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:33.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.533][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:33.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:33.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.536][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.539][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.542][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:33.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:33.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.545][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:33.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:33.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.548][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:33.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:33.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.551][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:33.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:33.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.554][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:33.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:33.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.557][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:33.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:33.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.560][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:33.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:33.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.562][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:33.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:33.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.565][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:33.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:33.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.568][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:33.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:33.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.571][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.574][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.577][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:33.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:33.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.580][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:33.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:33.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.583][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:33.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:33.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.586][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:33.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:33.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.589][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:33.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:33.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.597][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:33.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:33.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.600][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:33.601][private$selectFields]
biodb.TRACE[2022-04-09 08:06:33.602][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:33.603][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:33.603][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:33.604][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:33.605][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:33.606][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.606][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.607][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:33.608][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:33.608][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.609][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.610][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.611][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.611][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.612][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.613][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:33.614][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:33.614][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.615][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.616][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:33.616][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:33.617][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.618][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.618][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:33.619][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:33.620][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.620][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.621][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:33.622][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:33.623][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.623][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.624][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:33.625][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:33.625][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.626][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.627][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.628][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.628][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.629][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.630][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:33.630][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:33.631][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.632][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.632][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:33.633][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:33.634][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.634][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.635][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:33.636][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:33.637][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.637][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.638][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:33.639][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:33.639][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.640][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.641][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:33.642][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:33.642][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.643][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.644][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.644][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.645][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.646][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.646][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:33.647][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:33.648][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.648][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.649][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:33.650][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:33.650][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.651][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.652][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:33.652][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:33.653][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.654][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.654][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:33.655][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:33.656][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.657][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.657][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:33.658][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:33.659][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.659][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.660][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.661][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.661][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.662][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.663][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:33.663][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:33.664][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.665][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.665][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:33.666][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:33.667][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.668][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.668][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:33.669][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:33.670][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.670][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.671][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:06:33.672][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:06:33.672][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:33.673][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:33.674][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.674][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.675][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:33.676][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:33.677][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.677][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.678][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.679][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.679][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.680][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.681][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:33.682][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:33.682][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.683][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.684][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:33.684][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:33.685][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.686][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.686][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:33.687][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:33.688][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.689][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.689][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:33.690][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:33.691][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.691][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.692][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.693][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.694][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.694][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.695][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:33.696][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:33.697][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.697][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.698][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:33.699][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:33.700][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.700][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.701][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:33.702][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:33.703][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.703][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.704][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:06:33.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:33.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:33.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.708][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:33.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:33.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.711][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:33.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:33.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.714][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:33.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:33.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.717][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:33.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:33.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.719][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:33.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:33.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.723][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.725][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.728][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.731][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:33.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:33.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.734][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:33.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:33.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.737][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:33.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:33.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.740][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:33.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:33.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.743][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:33.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:33.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.746][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:33.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:33.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.749][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:33.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:33.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.752][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:33.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:33.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.755][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:33.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:33.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.758][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:33.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:33.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.761][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:33.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:33.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.764][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:33.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:33.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.767][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.770][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.773][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.776][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:33.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:33.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.779][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:33.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:33.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.782][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:33.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:33.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.785][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:33.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:33.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.788][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:33.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:33.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.791][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:33.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:33.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.794][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:33.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:33.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.797][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:33.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:33.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.800][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:33.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:33.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.806][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [65648, 0, 65648, C24H26O6, InChI=1S/C24H26O6/c1-13(2)9-10-23-20(27)22(28-5)11-14-19(26)18-15(25)7-6-8-16(18)29-24(14,23)17(12-22)21(3,4)30-23/h6-9,11,17,25H,10,12H2,1-5H3/t17-,22-,23-,24+/m0/s1, ...].
biodb.DEBUG[2022-04-09 08:06:33.807][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:33.808][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:33.820][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:33.820][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:33.821][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:33.822][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:33.823][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:33.823][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:33.824][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:33.902][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:33.905][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:33.906][cch$loadFileContent] Trying to load 1 files from cache: [1]: "c60f2116f91d4ce61370ae6298305b49".
biodb.TRACE[2022-04-09 08:06:33.907][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:33.908][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c60f2116f91d4ce61370ae6298305b49.content".
biodb.DEBUG[2022-04-09 08:06:33.910][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:33.913][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:33.914][cch$loadFileContent] Trying to load 1 files from cache: [1]: "921bb2fccd1f3497458cb7cf8fd2ffda".
biodb.TRACE[2022-04-09 08:06:33.914][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:33.915][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/921bb2fccd1f3497458cb7cf8fd2ffda.content".
biodb.DEBUG[2022-04-09 08:06:33.917][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:33.918][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:33.919][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:33.920][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:33.921][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:33.922][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:33.922][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:33.923][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.926][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.929][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:33.932][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:33.933][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:33.933][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:33.935][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:33.935][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:33.936][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:33.937][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:33.938][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.940][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.943][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:33.946][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:33.947][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:33.947][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:33.948][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:33.949][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:33.950][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:33.950][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:33.951][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.954][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.957][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:33.960][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:33.961][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:33.962][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:33.963][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:33.964][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:33.965][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:33.965][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:33.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:33.967][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:33.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:33.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.970][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:33.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:33.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.973][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:33.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:33.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.976][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:33.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:33.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.979][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.982][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.984][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:33.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:33.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.987][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:33.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:33.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.990][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:33.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:33.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.993][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:33.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:33.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.996][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:33.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:33.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.999][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:34.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:34.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.002][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:34.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:34.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.005][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:34.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:34.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.008][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:34.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:34.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.011][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:34.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:34.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.014][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.017][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.020][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:34.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:34.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.023][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:34.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:34.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.026][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:34.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:34.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.035][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:34.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:34.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.037][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:34.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:34.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.040][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:34.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:34.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.043][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:34.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:34.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.046][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:34.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:34.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.049][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:34.049][private$selectFields]
biodb.TRACE[2022-04-09 08:06:34.050][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:34.051][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:34.051][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:34.052][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:34.053][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:34.054][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.054][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.055][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:34.056][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:34.056][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.057][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.058][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.058][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.059][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.060][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.060][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:34.061][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:34.062][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.063][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.063][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:34.064][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:34.065][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.065][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.066][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:34.067][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:34.067][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.068][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.069][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:34.070][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:34.070][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.071][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.072][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:34.072][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:34.073][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.074][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.074][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.075][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.076][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.076][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.077][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:34.078][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:34.079][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.079][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.080][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:34.081][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:34.081][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.082][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.083][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:34.083][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:34.084][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.085][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.085][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:34.086][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:34.087][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.088][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.088][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:34.089][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:34.090][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.090][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.091][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:34.092][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:34.093][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.093][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.094][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.095][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.095][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.096][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.097][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:34.097][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:34.098][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.099][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.099][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:34.100][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:34.101][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.102][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.102][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:34.103][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:34.104][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.104][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.105][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:34.106][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:34.106][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.107][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.108][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:34.109][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:34.109][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.110][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.111][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.111][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.112][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.113][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.113][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:34.114][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:34.115][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.115][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.116][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:34.117][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:34.118][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.118][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.119][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:34.120][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:34.120][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.121][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.122][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:34.123][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:34.123][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.124][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.125][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:34.125][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:34.126][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:34.127][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:34.128][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.128][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.129][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:34.130][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:34.131][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.131][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.132][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.133][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.134][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.134][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.135][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:34.136][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:34.137][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.137][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.138][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:34.139][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:34.140][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.140][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.141][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:34.142][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:34.143][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.143][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.144][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:34.145][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:34.145][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.146][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.147][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:34.148][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:34.148][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.149][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.150][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.151][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.151][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.152][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.153][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:34.154][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:34.154][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.155][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.156][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:34.157][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:34.157][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.158][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.159][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:34.159][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:34.160][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.161][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.162][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:06:34.162][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:34.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:34.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:34.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:34.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:34.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:34.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.171][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:34.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:34.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.174][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:34.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:34.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.177][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:34.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:34.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.180][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.183][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.186][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.189][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:34.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:34.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.192][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:34.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:34.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.195][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:34.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:34.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.198][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:34.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:34.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.201][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:34.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:34.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.204][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:34.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:34.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.207][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:34.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:34.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.210][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:34.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:34.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.213][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:34.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:34.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.216][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:34.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:34.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.219][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:34.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:34.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.222][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:34.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:34.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.225][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:34.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:34.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.228][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:34.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:34.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.231][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:34.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:34.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.234][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.237][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.240][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.242][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:34.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:34.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.245][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:34.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:34.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.254][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:34.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:34.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.257][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:34.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:34.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.260][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:34.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:34.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.263][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:34.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:34.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.266][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:34.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:34.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.268][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:34.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:34.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.271][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:34.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:34.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.278][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4648, 0, 4648, C30H50, InChI=1S/C30H50/c1-20(2)21-12-17-27(5)22(21)13-18-29(7)24(27)10-11-25-28(6)16-9-15-26(3,4)23(28)14-19-30(25,29)8/h21-25H,1,9-19H2,2-8H3/t21-,22+,23+,24-,25-,27+,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2022-04-09 08:06:34.279][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:34.280][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:34.280][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:34.282][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:34.282][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:34.283][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:34.284][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:34.285][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:34.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:34.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:34.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:34.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.290][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:34.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:34.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.293][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:34.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:34.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.296][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.299][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.301][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:34.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:34.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.304][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:34.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:34.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.307][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:34.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:34.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.310][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:34.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:34.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.313][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:34.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:34.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.315][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:34.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:34.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.318][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:34.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:34.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.321][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:34.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:34.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.324][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:34.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:34.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.327][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:34.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:34.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.329][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.332][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.335][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:34.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:34.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.338][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:34.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:34.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.341][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:34.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:34.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.344][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:34.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:34.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.347][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:34.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:34.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.350][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:34.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:34.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.353][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:34.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:34.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.356][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:34.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:34.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.359][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:34.359][private$selectFields]
biodb.TRACE[2022-04-09 08:06:34.360][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:34.361][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:34.362][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:34.362][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:34.363][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:34.364][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.365][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.365][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:34.366][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:34.367][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.368][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.368][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.369][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.370][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.371][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.371][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:34.372][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:34.373][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.374][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.374][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:34.375][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:34.376][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.377][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.377][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:34.378][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:34.379][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.379][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.380][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:34.381][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:34.382][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.382][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.383][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:34.384][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:34.384][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.385][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.386][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.386][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.387][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.388][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.388][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:34.389][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:34.390][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.391][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.391][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:34.392][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:34.393][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.394][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.394][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:34.395][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:34.396][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.397][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.397][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:34.398][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:34.399][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.400][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.400][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:34.401][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:34.402][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.403][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.403][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:34.404][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:34.405][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.406][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.406][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.407][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.408][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.409][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.409][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:34.410][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:34.411][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.412][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.412][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:34.413][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:34.414][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.414][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.415][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:34.416][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:34.417][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.417][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.418][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:34.419][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:34.420][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.420][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.421][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:34.422][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:34.423][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.423][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.424][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.425][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.426][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.426][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.427][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:34.428][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:34.429][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.429][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.430][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:34.431][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:34.432][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.432][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.433][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:34.434][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:34.435][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.435][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.436][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:34.437][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:34.437][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.438][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.439][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:34.440][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:34.440][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:34.441][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:34.442][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.443][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.443][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:34.444][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:34.445][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.446][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.446][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.447][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.448][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.449][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.449][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:34.450][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:34.451][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.452][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.452][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:34.453][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:34.454][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.455][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.455][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:34.456][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:34.457][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.458][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.458][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:34.459][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:34.460][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.461][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.461][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:34.462][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:34.463][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.463][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.464][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.465][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.466][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.472][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.473][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:34.474][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:34.475][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.476][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.476][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:34.477][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:34.478][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.479][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.479][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:34.480][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:34.481][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.481][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.482][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:06:34.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:34.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:34.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:34.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:34.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.488][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:34.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:34.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.491][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:34.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:34.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.494][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:34.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:34.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.497][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:34.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:34.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.500][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.503][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.506][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.509][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:34.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:34.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.512][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:34.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:34.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.514][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:34.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:34.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.517][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:34.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:34.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.520][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:34.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:34.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.523][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:34.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:34.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.526][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:34.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:34.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.528][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:34.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:34.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.531][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:34.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:34.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.534][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:34.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:34.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.537][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:34.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:34.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.540][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:34.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:34.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.543][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:34.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:34.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.545][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:34.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:34.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.548][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:34.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:34.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.551][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.554][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.557][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.560][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:34.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:34.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.563][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:34.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:34.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.565][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:34.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:34.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.568][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:34.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:34.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.571][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:34.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:34.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.574][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:34.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:34.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.578][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:34.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:34.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.580][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:34.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:34.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.583][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:34.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:34.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.591][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2022-04-09 08:06:34.591][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:34.592][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:34.593][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:34.594][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:34.595][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:34.596][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:34.596][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:34.597][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:34.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:34.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.600][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:34.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:34.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.603][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:34.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:34.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.606][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:34.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:34.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.608][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.611][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.614][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:34.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:34.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.617][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:34.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:34.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.620][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:34.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:34.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.623][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:34.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:34.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.626][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:34.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:34.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.629][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:34.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:34.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.632][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:34.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:34.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.635][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:34.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:34.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.638][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:34.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:34.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.641][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:34.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:34.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.644][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.647][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.650][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:34.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:34.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.653][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:34.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:34.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.656][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:34.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:34.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.659][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:34.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:34.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.662][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:34.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:34.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.665][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:34.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:34.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.668][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:34.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:34.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.671][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:34.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:34.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.673][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:34.674][private$selectFields]
biodb.TRACE[2022-04-09 08:06:34.675][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:34.676][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:34.676][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:34.677][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:34.678][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:34.679][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.679][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.680][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:34.681][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:34.681][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.682][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.683][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.684][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.684][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.685][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.692][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:34.693][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:34.693][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.694][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.695][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:34.696][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:34.696][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.697][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.698][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:34.698][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:34.699][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.700][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.700][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:34.701][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:34.702][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.702][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.703][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:34.704][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:34.705][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.705][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.706][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.707][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.707][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.708][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.709][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:34.709][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:34.710][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.711][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.711][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:34.712][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:34.713][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.713][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.714][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:34.715][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:34.715][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.716][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.717][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:34.718][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:34.718][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.719][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.720][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:34.721][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:34.721][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.722][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.723][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:34.723][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:34.724][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.725][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.726][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.726][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.727][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.728][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.728][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:34.729][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:34.730][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.731][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.731][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:34.732][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:34.733][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.733][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.734][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:34.735][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:34.736][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.736][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.737][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:34.738][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:34.738][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.739][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.740][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:34.741][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:34.741][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.742][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.743][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.744][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.744][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.745][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.746][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:34.746][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:34.747][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.748][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.748][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:34.749][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:34.750][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.751][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.751][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:34.752][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:34.753][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.753][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.754][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:34.755][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:34.756][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.756][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.757][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:06:34.758][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:06:34.758][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:34.759][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:34.760][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.761][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.761][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:34.762][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:34.763][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.764][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.764][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.765][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.766][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.766][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.767][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:34.768][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:34.769][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.769][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.770][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:34.771][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:34.771][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.772][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.773][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:34.774][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:34.774][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.775][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.776][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:34.777][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:34.777][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.778][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.779][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.780][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.780][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.781][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.782][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:34.782][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:34.783][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.784][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.785][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:34.785][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:34.786][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.787][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.788][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:34.788][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:34.789][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.790][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.791][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:06:34.791][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:34.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:34.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.795][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:34.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:34.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:34.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:34.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.801][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:34.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:34.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.804][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:34.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:34.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.807][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:34.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:34.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.810][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.813][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.816][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.819][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:34.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:34.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.822][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:34.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:34.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.825][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:34.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:34.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.828][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:34.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:34.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.831][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:34.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:34.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.834][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:34.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:34.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.837][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:34.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:34.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.840][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:34.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:34.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.843][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:34.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:34.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.846][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:34.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:34.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.849][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:34.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:34.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.852][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:34.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:34.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.855][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.858][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.861][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.865][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:34.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:34.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.868][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:34.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:34.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.871][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:34.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:34.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.874][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:34.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:34.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.877][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:34.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:34.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.880][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:34.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:34.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.883][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:34.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:34.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.886][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:34.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:34.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.889][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:34.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:34.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.896][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [62447, 0, 62447, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-29(7)24(23)13-14-26-28(6)18-10-17-27(4,5)25(28)16-20-30(26,29)8/h11,23-26H,3,9-10,12-20H2,1-2,4-8H3/t23-,24-,25+,26-,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2022-04-09 08:06:34.897][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:34.898][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:34.900][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:34.901][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:34.902][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:34.903][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:34.904][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:34.904][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:34.905][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:34.993][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:34.995][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:34.996][cch$loadFileContent] Trying to load 1 files from cache: [1]: "839357b56387b64c91d43055dd5c5193".
biodb.TRACE[2022-04-09 08:06:34.997][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:34.998][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/839357b56387b64c91d43055dd5c5193.content".
biodb.DEBUG[2022-04-09 08:06:35.000][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:35.001][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:35.002][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:35.003][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:35.004][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:35.004][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:35.005][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:35.006][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.009][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.012][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:35.015][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:35.016][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:35.017][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:35.018][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:35.019][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:35.019][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:35.020][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:35.021][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.024][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.027][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:35.030][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:35.031][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:35.032][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:35.033][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:35.034][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:35.034][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:35.035][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:35.036][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.039][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.041][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:35.044][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:35.046][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:35.046][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:35.047][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:35.048][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:35.049][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:35.049][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:35.050][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:35.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.053][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.056][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:35.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:35.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.059][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:35.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:35.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.062][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.065][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.068][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:35.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:35.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.071][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:35.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:35.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.074][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:35.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:35.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.077][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:35.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:35.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.080][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:35.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:35.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.083][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:35.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:35.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.086][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:35.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:35.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.089][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:35.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:35.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.092][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:35.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:35.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.095][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:35.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:35.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.098][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.101][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.104][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:35.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:35.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.107][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:35.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:35.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.110][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:35.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:35.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.113][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:35.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:35.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.117][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:35.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:35.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.120][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:35.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:35.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.123][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:35.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:35.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.125][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:35.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:35.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.128][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:35.129][private$selectFields]
biodb.TRACE[2022-04-09 08:06:35.136][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:35.137][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:35.137][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:35.138][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.139][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.139][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.140][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.141][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:35.142][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:35.142][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.143][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.144][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.144][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.145][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.146][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.146][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:35.147][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:35.148][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.149][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.149][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:35.150][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:35.151][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.151][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.152][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:35.153][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:35.153][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.154][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.155][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:35.155][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:35.156][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.157][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.157][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:35.158][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:35.159][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.160][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.160][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.161][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.162][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.162][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.163][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:35.164][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:35.164][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.165][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.166][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:35.167][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:35.167][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.168][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.169][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:35.169][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:35.170][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.171][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.171][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:35.172][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:35.173][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.173][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.174][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.175][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.175][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.176][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.177][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:35.178][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:35.178][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.179][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.180][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.180][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.181][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.182][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.182][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:35.183][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:35.184][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.184][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.185][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:35.186][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:35.187][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.187][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.188][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:35.189][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:35.189][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.190][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.191][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:35.191][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:35.192][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.193][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.193][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:35.194][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:35.195][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.195][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.196][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.197][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.197][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.198][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.199][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:35.200][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:35.200][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.201][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.201][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:35.202][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:35.203][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.204][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.204][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:35.205][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:35.206][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.206][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.207][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:35.208][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:35.208][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.209][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.210][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:35.210][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:35.211][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.212][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.213][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.213][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.214][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:35.215][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:35.215][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.216][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.217][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.217][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.218][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.219][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.219][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:35.220][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:35.221][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.222][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.222][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:35.223][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:35.224][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.224][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.225][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:35.226][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:35.227][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.227][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.228][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:35.229][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:35.229][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.230][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.231][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:35.232][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:35.232][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.233][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.234][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.235][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.235][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.236][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.237][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:35.237][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:35.238][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.239][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.240][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:35.240][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:35.241][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.242][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.243][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:35.243][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:35.244][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.245][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.245][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:06:35.246][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.249][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.252][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.255][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:35.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:35.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.258][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:35.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:35.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.261][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:35.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:35.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.264][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.266][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.269][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.272][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:35.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:35.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.275][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:35.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:35.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.278][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:35.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:35.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.281][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:35.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:35.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.284][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:35.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:35.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.287][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:35.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:35.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.290][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:35.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:35.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.293][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:35.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:35.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.296][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:35.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:35.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.299][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:35.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:35.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.302][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:35.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:35.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.305][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:35.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:35.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.308][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:35.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:35.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.311][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:35.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:35.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.314][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:35.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:35.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.317][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.320][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.323][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.326][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:35.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:35.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.329][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:35.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:35.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.332][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:35.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:35.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.335][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:35.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:35.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.338][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:35.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:35.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.341][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:35.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:35.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.344][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:35.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:35.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.353][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:35.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:35.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.356][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:35.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:35.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.362][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2022-04-09 08:06:35.363][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:35.364][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:35.365][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:35.366][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:35.367][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:35.367][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:35.368][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:35.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.371][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.374][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:35.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:35.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.377][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:35.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:35.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.380][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.383][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.385][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:35.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:35.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.388][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:35.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:35.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.391][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:35.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:35.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.394][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:35.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:35.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.397][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:35.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:35.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.400][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:35.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:35.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.402][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:35.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:35.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.405][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:35.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:35.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.408][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:35.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:35.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.411][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:35.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:35.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.414][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.416][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.419][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:35.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:35.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.422][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:35.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:35.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.425][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:35.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:35.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.428][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:35.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:35.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.430][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:35.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:35.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.433][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:35.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:35.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.436][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:35.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:35.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.439][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:35.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:35.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.442][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:35.443][private$selectFields]
biodb.TRACE[2022-04-09 08:06:35.443][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:35.444][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:35.445][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:35.446][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.446][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.447][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.448][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.449][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:35.449][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:35.450][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.451][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.452][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.452][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.453][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.454][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.455][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:35.455][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:35.456][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.457][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.457][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:35.458][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:35.459][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.460][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.460][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:35.461][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:35.462][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.463][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.463][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:35.464][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:35.465][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.466][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.466][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:35.467][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:35.468][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.468][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.469][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.470][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.471][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.471][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.472][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:35.473][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:35.474][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.474][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.475][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:35.476][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:35.477][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.477][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.478][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:35.479][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:35.479][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.480][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.481][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:35.481][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:35.482][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.483][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.483][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.484][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.485][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.485][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.486][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:35.487][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:35.487][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.488][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.489][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.490][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.490][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.491][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.492][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:35.493][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:35.493][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.494][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.495][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:35.495][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:35.496][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.497][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.498][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:35.498][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:35.499][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.500][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.500][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:35.501][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:35.502][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.503][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.503][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:35.504][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:35.505][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.506][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.506][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.507][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.508][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.508][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.509][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:35.510][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:35.511][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.511][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.512][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:35.513][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:35.514][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.514][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.515][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:35.516][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:35.517][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.517][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.518][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:35.519][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:35.519][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.520][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.521][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:06:35.522][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:06:35.522][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.523][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.524][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.525][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.525][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:35.526][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:35.527][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.528][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.528][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.529][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.530][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.530][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.531][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:35.532][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:35.533][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.533][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.534][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:35.535][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:35.536][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.536][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.537][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:35.538][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:35.539][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.539][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.540][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:35.541][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:35.541][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.542][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.543][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.544][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.544][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.545][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.546][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:35.547][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:35.547][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.548][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.549][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:35.550][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:35.550][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.551][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.552][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:35.552][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:35.553][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.554][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.555][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:06:35.555][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.558][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.561][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.570][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:35.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:35.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.573][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:35.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:35.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.576][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:35.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:35.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.579][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.581][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.584][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.587][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:35.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:35.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.590][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:35.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:35.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.593][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:35.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:35.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.596][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:35.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:35.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.598][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:35.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:35.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.601][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:35.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:35.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.604][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:35.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:35.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.607][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:35.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:35.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.610][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:35.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:35.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.613][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:35.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:35.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.615][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:35.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:35.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.618][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:35.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:35.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.621][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.624][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.627][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.629][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:35.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:35.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.632][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:35.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:35.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.635][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:35.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:35.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.638][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:35.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:35.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.641][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:35.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:35.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.644][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:35.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:35.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.647][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:35.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:35.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.650][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:35.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:35.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.653][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:35.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:35.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.660][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [91601, 0, 91601, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24?,25?/m0/s1, ...].
biodb.DEBUG[2022-04-09 08:06:35.661][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:35.661][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:35.662][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:35.663][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:35.664][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:35.665][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:35.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:35.667][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.670][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.673][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:35.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:35.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.676][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:35.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:35.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.679][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.682][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.685][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:35.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:35.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.688][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:35.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:35.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.690][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:35.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:35.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.693][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:35.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:35.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.696][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:35.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:35.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.699][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:35.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:35.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.702][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:35.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:35.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.705][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:35.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:35.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.707][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:35.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:35.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.710][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:35.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:35.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.713][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.716][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.719][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:35.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:35.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.722][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:35.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:35.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.725][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:35.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:35.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.728][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:35.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:35.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.731][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:35.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:35.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.734][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:35.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:35.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.737][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:35.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:35.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.740][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:35.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:35.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.743][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:35.744][private$selectFields]
biodb.TRACE[2022-04-09 08:06:35.745][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:35.745][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:35.746][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:35.747][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.748][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.748][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.749][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.750][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:35.751][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:35.751][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.752][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.753][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.753][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.754][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.755][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.756][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:35.756][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:35.757][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.758][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.758][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:35.759][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:35.760][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.761][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.761][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:35.762][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:35.763][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.764][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.764][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:35.765][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:35.766][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.767][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.767][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:35.768][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:35.769][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.770][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.770][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.771][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.772][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.772][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.773][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:35.774][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:35.775][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.775][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.776][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:35.777][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:35.778][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.778][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.779][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:35.780][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:35.780][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.781][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.782][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:35.800][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:35.801][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.802][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.802][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.803][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.804][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.804][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.805][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:35.806][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:35.807][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.807][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.808][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.809][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.809][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.810][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.811][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:35.812][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:35.812][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.813][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.814][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:35.814][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:35.815][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.816][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.816][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:35.817][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:35.818][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.818][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.819][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:35.820][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:35.820][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.821][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.822][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:35.823][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:35.823][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.824][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.825][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.825][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.826][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.827][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.827][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:35.828][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:35.829][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.830][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.830][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:35.831][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:35.832][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.832][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.833][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:35.834][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:35.835][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.835][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.836][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:35.837][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:35.838][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.838][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.839][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:06:35.840][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:06:35.840][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.841][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.842][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.843][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.843][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:35.844][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:35.845][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.846][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.846][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.847][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.848][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.849][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.849][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:35.850][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:35.851][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.851][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.852][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:35.853][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:35.854][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.854][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.855][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:35.856][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:35.856][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.857][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.858][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:35.859][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:35.859][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.860][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.861][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.861][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.862][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.863][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.864][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:35.864][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:35.865][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.866][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.866][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:35.867][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:35.868][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.869][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.869][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:35.870][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:35.871][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.872][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.872][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:06:35.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.876][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.879][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.882][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:35.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:35.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.885][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:35.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:35.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.888][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:35.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:35.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.891][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.894][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.897][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.900][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:35.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:35.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.903][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:35.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:35.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.906][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:35.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:35.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.909][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:35.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:35.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.912][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:35.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:35.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.914][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:35.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:35.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.917][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:35.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:35.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.920][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:35.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:35.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.923][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:35.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:35.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.926][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:35.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:35.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.929][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:35.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:35.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.931][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:35.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:35.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.934][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.937][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.940][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.943][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:35.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:35.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.946][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:35.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:35.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.948][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:35.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:35.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.951][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:35.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:35.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.954][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:35.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:35.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.957][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:35.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:35.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.960][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:35.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:35.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.962][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:35.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:35.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.965][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:35.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:35.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.972][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [95147, 0, 95147, C29H40N2O4, InChI=1S/C29H40N2O4/c1-3-18-16(2)14-22-20(18)10-11-21-19-6-4-8-26(33)30-13-5-7-24-28(34)27(29(35)31-24)25(32)12-9-17(19)15-23(21)22/h4,8,10-11,16-24,27H,3,5-7,9,12-15H2,1-2H3,(H,30,33)(H,31,35)/t16-,17-,18-,19+,20+,21-,22+,23+,24+,27?/m1/s1, ...].
biodb.DEBUG[2022-04-09 08:06:35.973][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:35.973][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:35.976][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:35.976][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:35.977][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:35.978][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:35.979][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:35.980][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:35.980][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:36.065][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:36.067][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:36.068][cch$loadFileContent] Trying to load 1 files from cache: [1]: "432bde1fb4bc526aec38c781f579d7cb".
biodb.TRACE[2022-04-09 08:06:36.069][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:36.070][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/432bde1fb4bc526aec38c781f579d7cb.content".
biodb.DEBUG[2022-04-09 08:06:36.072][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:36.073][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:36.073][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:36.075][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:36.075][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:36.076][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:36.077][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:36.078][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.080][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.083][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:36.086][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:36.087][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:36.087][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:36.089][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:36.089][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:36.090][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:36.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:36.091][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.094][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.097][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:36.100][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:36.101][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:36.102][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:36.103][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:36.103][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:36.104][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:36.105][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:36.106][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.109][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.112][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:36.115][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:36.116][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:36.117][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:36.117][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:36.118][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:36.119][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:36.120][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:36.120][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:36.121][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:36.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:36.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.124][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:36.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:36.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.127][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:36.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:36.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.130][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:36.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:36.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.133][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:36.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:36.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.136][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:36.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:36.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.139][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:36.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:36.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.142][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:36.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:36.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.145][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:36.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:36.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.148][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:36.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:36.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.150][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:36.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:36.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.153][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:36.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:36.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.156][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:36.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:36.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.159][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:36.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:36.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.162][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:36.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:36.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.165][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:36.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:36.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.168][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.171][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.174][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:36.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:36.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.177][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:36.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:36.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.180][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:36.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:36.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.183][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:36.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:36.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.186][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:36.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:36.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.189][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:36.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:36.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.192][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:36.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:36.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.195][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:36.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:36.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.198][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:36.198][private$selectFields]
biodb.TRACE[2022-04-09 08:06:36.199][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:36.200][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:36.200][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:36.201][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:36.202][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:36.203][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.203][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.204][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:36.205][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:36.206][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.206][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.207][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:36.208][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:36.209][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.209][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.210][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:36.211][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:36.212][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.212][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.213][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:36.214][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:36.215][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.215][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.216][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:36.217][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:36.217][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.218][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.219][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:36.219][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:36.220][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.221][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.221][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:36.222][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:36.223][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.224][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.224][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.225][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.226][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.232][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.233][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:36.234][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:36.235][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.235][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.236][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:36.237][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:36.237][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.238][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.239][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:36.239][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:36.240][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.241][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.241][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:36.242][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:36.243][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.244][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.244][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:36.245][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:36.246][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.246][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.247][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:36.248][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:36.248][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.249][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.250][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:36.250][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:36.251][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.252][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.253][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:36.253][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:36.254][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.255][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.255][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:36.256][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:36.257][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.257][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.258][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:36.259][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:36.260][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.260][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.261][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:36.262][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:36.262][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.263][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.264][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:36.264][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:36.265][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.266][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.266][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.267][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.268][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.269][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.269][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:36.270][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:36.271][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.271][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.272][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:36.273][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:36.273][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.274][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.275][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:36.275][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:36.276][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.277][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.277][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:36.278][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:36.279][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.280][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.280][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:36.281][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:36.282][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:36.283][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:36.283][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.284][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.285][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:36.285][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:36.286][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.287][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.287][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:36.288][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:36.289][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.289][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.290][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:36.291][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:36.292][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.292][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.293][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:36.294][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:36.294][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.295][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.296][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:36.297][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:36.297][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.298][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.299][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:36.299][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:36.300][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.301][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.301][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:36.302][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:36.303][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.304][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.304][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.305][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.306][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.306][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.307][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:36.308][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:36.309][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.309][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.310][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:36.311][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:36.312][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.312][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.313][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:36.314][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:36.314][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.315][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.316][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:06:36.317][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:36.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:36.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.319][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:36.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:36.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.322][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:36.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:36.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.325][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:36.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:36.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.328][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:36.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:36.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.331][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:36.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:36.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.334][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:36.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:36.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.337][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:36.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:36.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.340][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:36.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:36.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.343][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:36.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:36.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.346][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:36.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:36.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.349][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:36.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:36.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.352][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:36.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:36.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.355][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:36.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:36.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.358][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:36.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:36.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.361][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:36.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:36.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.364][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:36.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:36.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.367][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:36.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:36.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.370][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:36.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:36.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.373][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:36.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:36.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.376][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:36.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:36.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.379][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:36.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:36.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.382][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:36.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:36.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.385][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:36.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:36.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.388][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.391][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.394][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.397][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:36.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:36.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.400][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:36.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:36.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.403][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:36.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:36.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.406][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:36.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:36.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.409][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:36.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:36.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.412][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:36.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:36.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.415][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:36.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:36.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.418][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:36.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:36.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.421][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:36.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:36.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.428][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [636, 0, 636, C24H26O6, InChI=1S/C24H26O6/c1-12(2)6-7-14-19-17(11-16(26)22(14)28-5)29-18-10-15(25)13-8-9-24(3,4)30-23(13)20(18)21(19)27/h6,10-11,25-26H,7-9H2,1-5H3, ...].
biodb.DEBUG[2022-04-09 08:06:36.429][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:36.429][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:36.430][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:36.432][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:36.432][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:36.433][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:36.434][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:36.434][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:36.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:36.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.437][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:36.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:36.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.440][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:36.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:36.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.443][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:36.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:36.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.451][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:36.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:36.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.454][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:36.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:36.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.457][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:36.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:36.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.460][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:36.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:36.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.463][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:36.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:36.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.466][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:36.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:36.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.468][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:36.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:36.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.471][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:36.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:36.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.474][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:36.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:36.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.477][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:36.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:36.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.480][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:36.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:36.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.482][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:36.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:36.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.485][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.488][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.491][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:36.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:36.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.493][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:36.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:36.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.496][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:36.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:36.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.499][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:36.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:36.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.502][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:36.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:36.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.505][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:36.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:36.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.507][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:36.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:36.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.510][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:36.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:36.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.513][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:36.514][private$selectFields]
biodb.TRACE[2022-04-09 08:06:36.514][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:36.515][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:36.516][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:36.516][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:36.517][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:36.518][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.518][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.519][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:36.520][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:36.521][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.521][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.522][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:36.523][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:36.523][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.524][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.525][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:36.525][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:36.526][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.527][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.527][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:36.528][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:36.529][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.530][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.530][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:36.531][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:36.532][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.532][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.533][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:36.534][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:36.535][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.535][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.536][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:36.537][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:36.537][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.538][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.539][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.539][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.540][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.541][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.542][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:36.542][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:36.543][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.544][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.545][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:36.545][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:36.546][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.547][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.547][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:36.548][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:36.549][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.550][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.550][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:36.551][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:36.552][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.552][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.553][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:36.554][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:36.555][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.555][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.556][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:36.557][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:36.558][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.558][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.559][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:36.560][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:36.560][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.561][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.562][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:36.563][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:36.563][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.564][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.565][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:36.566][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:36.566][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.567][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.568][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:36.568][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:36.569][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.570][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.571][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:36.571][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:36.572][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.573][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.573][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:36.574][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:36.575][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.576][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.576][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.577][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.578][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.578][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.579][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:36.580][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:36.581][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.581][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.582][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:36.583][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:36.584][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.584][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.585][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:36.586][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:36.586][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.587][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.588][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:36.589][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:36.589][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.590][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.591][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:06:36.592][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:06:36.592][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:36.593][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:36.594][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.595][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.595][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:36.596][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:36.597][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.597][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.598][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:36.599][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:36.600][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.600][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.601][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:36.602][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:36.603][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.603][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.604][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:36.605][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:36.605][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.606][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.607][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:36.608][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:36.608][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.609][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.610][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:36.611][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:36.611][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.612][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.613][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.614][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.614][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.615][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.616][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:36.616][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:36.617][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.618][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.619][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:36.619][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:36.620][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.621][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.621][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:36.622][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:36.623][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.624][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.624][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:06:36.625][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:36.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:36.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.628][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:36.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:36.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.631][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:36.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:36.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.634][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:36.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:36.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.637][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:36.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:36.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.640][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:36.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:36.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.643][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:36.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:36.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.646][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:36.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:36.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.649][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:36.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:36.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.652][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:36.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:36.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.655][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:36.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:36.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.657][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:36.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:36.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.660][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:36.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:36.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.669][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:36.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:36.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.672][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:36.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:36.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.675][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:36.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:36.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.677][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:36.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:36.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.680][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:36.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:36.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.683][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:36.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:36.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.686][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:36.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:36.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.689][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:36.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:36.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.691][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.694][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.697][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.700][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:36.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:36.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.703][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:36.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:36.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.706][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:36.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:36.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.708][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:36.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:36.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.711][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:36.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:36.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.714][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:36.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:36.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.717][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:36.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:36.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.720][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:36.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:36.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.722][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:36.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:36.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.729][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [64199, 0, 64199, C24H27ClN2O2, InChI=1S/C24H26N2O2.ClH/c27-24(28)20-9-10-23-22(16-20)21(17-25-23)8-4-5-13-26-14-11-19(12-15-26)18-6-2-1-3-7-18;/h1-3,6-7,9-11,16-17,25H,4-5,8,12-15H2,(H,27,28);1H, ...].
biodb.DEBUG[2022-04-09 08:06:36.730][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:36.730][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:36.731][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:36.732][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:36.733][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:36.733][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:36.734][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:36.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:36.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:36.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.738][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:36.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:36.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.741][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:36.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:36.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.743][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:36.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:36.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.746][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:36.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:36.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.749][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:36.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:36.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.752][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:36.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:36.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.755][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:36.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:36.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.758][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:36.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:36.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.761][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:36.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:36.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.764][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:36.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:36.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.767][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:36.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:36.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.770][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:36.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:36.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.773][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:36.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:36.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.776][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:36.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:36.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.778][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:36.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:36.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.781][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.784][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.787][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:36.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:36.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.790][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:36.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:36.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.793][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:36.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:36.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.796][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:36.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:36.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.799][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:36.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:36.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.802][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:36.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:36.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.805][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:36.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:36.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.808][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:36.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:36.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.811][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:36.811][private$selectFields]
biodb.TRACE[2022-04-09 08:06:36.812][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:36.813][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:36.813][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:36.814][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:36.815][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:36.816][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.816][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.817][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:36.818][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:36.818][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.819][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.820][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:36.821][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:36.821][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.822][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.823][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:36.824][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:36.824][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.825][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.826][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:36.827][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:36.827][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.828][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.829][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:36.830][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:36.830][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.831][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.832][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:36.833][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:36.833][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.834][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.835][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:36.836][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:36.836][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.837][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.838][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.838][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.839][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.840][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.841][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:36.841][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:36.842][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.843][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.844][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:36.844][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:36.845][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.846][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.846][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:36.847][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:36.848][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.849][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.849][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:36.850][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:36.851][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.852][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.852][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:36.853][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:36.854][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.854][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.855][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:36.856][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:36.857][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.857][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.858][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:36.859][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:36.860][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.860][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.861][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:36.862][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:36.862][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.863][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.864][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:36.865][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:36.865][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.866][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.867][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:36.867][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:36.868][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.869][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.869][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:36.870][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:36.871][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.871][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.872][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:36.873][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:36.873][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.874][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.875][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.876][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.876][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.877][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.878][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:36.884][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:36.884][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.885][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.886][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:36.887][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:36.887][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.888][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.889][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:36.889][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:36.890][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.891][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.891][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:36.892][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:36.893][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.894][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.894][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:06:36.895][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:06:36.896][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:36.896][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:36.897][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.898][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.898][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:36.899][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:36.900][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.900][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.901][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:36.902][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:36.903][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.903][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.904][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:36.905][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:36.905][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.906][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.907][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:36.908][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:36.908][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.909][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.910][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:36.910][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:36.911][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.912][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.912][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:36.913][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:36.914][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.914][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.915][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.916][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.917][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.917][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.918][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:36.919][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:36.919][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.920][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.921][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:36.921][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:36.922][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.923][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.923][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:36.924][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:36.925][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.925][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.926][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:06:36.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:36.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:36.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.930][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:36.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:36.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.932][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:36.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:36.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.935][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:36.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:36.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.938][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:36.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:36.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.941][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:36.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:36.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.944][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:36.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:36.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.946][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:36.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:36.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.949][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:36.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:36.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.952][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:36.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:36.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.955][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:36.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:36.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.958][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:36.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:36.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.961][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:36.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:36.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.963][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:36.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:36.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.966][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:36.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:36.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.969][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:36.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:36.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.972][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:36.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:36.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.975][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:36.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:36.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.978][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:36.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:36.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.981][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:36.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:36.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.984][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:36.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:36.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.987][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.990][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.993][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.996][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:36.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:36.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.998][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:36.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:37.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.001][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:37.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:37.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.004][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:37.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:37.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.007][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:37.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:37.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.010][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:37.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:37.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.013][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:37.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:37.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.016][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:37.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:37.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.019][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:37.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:37.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.026][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [65648, 0, 65648, C24H26O6, InChI=1S/C24H26O6/c1-13(2)9-10-23-20(27)22(28-5)11-14-19(26)18-15(25)7-6-8-16(18)29-24(14,23)17(12-22)21(3,4)30-23/h6-9,11,17,25H,10,12H2,1-5H3/t17-,22-,23-,24+/m0/s1, ...].
biodb.DEBUG[2022-04-09 08:06:37.027][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:37.027][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-04-09 08:06:37.031][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:06:37.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:06:37.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.034][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:06:37.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:06:37.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.037][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:06:37.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:06:37.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-04-09 08:06:37.041][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2022-04-09 08:06:37.041][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2022-04-09 08:06:37.042][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2022-04-09 08:06:37.043][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2022-04-09 08:06:37.044][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:37.044][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:37.045][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:37.046][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:37.046][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:37.047][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1335 ]
>
> proc.time()
user system elapsed
91.674 1.290 228.118
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.0.1.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.14-bioc-longtests/meat/biodbChebi.Rcheck’ * using R version 4.1.3 (2022-03-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using options ‘--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error’ * checking for file ‘biodbChebi/DESCRIPTION’ ... OK * this is package ‘biodbChebi’ version ‘1.0.1’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘biodbChebi’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... SKIPPED * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... SKIPPED * checking examples ... SKIPPED * checking for unstated dependencies in ‘longtests’ ... OK * checking tests in ‘longtests’ ... Running ‘testthat.R’ OK * DONE Status: OK
biodbChebi.Rcheck/00install.out
* installing *source* package ‘biodbChebi’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (biodbChebi)